Wall clock time and date at job start Tue Mar 31 2020 05:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86808 * 119.99681 * 2 1 4 4 H 1.48499 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47253 * 299.99969 * 3 2 1 6 6 H 1.48497 * 109.46921 * 59.99729 * 3 2 1 7 7 C 1.39900 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99803 * 175.57198 * 7 2 1 9 9 C 1.41156 * 120.00101 * 355.57106 * 7 2 1 10 10 C 1.40868 * 120.16277 * 214.78057 * 9 7 2 11 11 C 1.36376 * 119.82595 * 179.97438 * 10 9 7 12 12 C 1.39484 * 120.16994 * 359.97438 * 11 10 9 13 13 N 1.39238 * 119.83461 * 180.02562 * 12 11 10 14 14 C 1.34780 * 119.99958 * 144.75403 * 13 12 11 15 15 O 1.21280 * 119.99897 * 4.29577 * 14 13 12 16 16 C 1.50701 * 119.99456 * 184.30277 * 14 13 12 17 17 H 1.08995 * 110.85596 * 300.69640 * 16 14 13 18 18 C 1.54629 * 110.96978 * 64.49123 * 16 14 13 19 19 C 1.51345 * 104.16332 * 142.88891 * 18 16 14 20 20 O 1.21277 * 124.92566 * 163.74206 * 19 18 16 21 21 N 1.34416 * 110.13192 * 343.79573 * 19 18 16 22 22 C 1.46495 * 124.34893 * 179.58821 * 21 19 18 23 23 C 1.50701 * 109.47087 * 269.97422 * 22 21 19 24 24 C 1.38238 * 119.99746 * 269.72858 * 23 22 21 25 25 C 1.38236 * 119.99921 * 179.78803 * 24 23 22 26 26 C 1.38238 * 120.00009 * 0.43712 * 25 24 23 27 27 C 1.38238 * 119.99784 * 359.81289 * 26 25 24 28 28 C 1.38232 * 120.00269 * 89.99724 * 23 22 21 29 29 C 1.46757 * 111.30100 * 359.56057 * 21 19 18 30 30 C 1.39483 * 120.33127 * 0.29463 * 12 11 10 31 31 C 1.36379 * 120.16711 * 359.44422 * 30 12 11 32 32 H 0.96995 * 119.99961 * 0.02562 * 1 2 3 33 33 H 1.08003 * 120.08695 * 359.97438 * 10 9 7 34 34 H 1.08001 * 119.91581 * 179.97438 * 11 10 9 35 35 H 0.96999 * 119.99836 * 324.74843 * 13 12 11 36 36 H 1.08996 * 110.48395 * 261.59018 * 18 16 14 37 37 H 1.09003 * 110.48675 * 24.23670 * 18 16 14 38 38 H 1.09007 * 109.47659 * 29.97082 * 22 21 19 39 39 H 1.09000 * 109.47507 * 149.97595 * 22 21 19 40 40 H 1.07995 * 120.00388 * 359.97438 * 24 23 22 41 41 H 1.08000 * 120.00608 * 180.27467 * 25 24 23 42 42 H 1.07994 * 119.99957 * 179.83624 * 26 25 24 43 43 H 1.08007 * 119.99970 * 179.97438 * 27 26 25 44 44 H 1.08004 * 119.99961 * 359.97438 * 28 23 22 45 45 H 1.08999 * 110.24782 * 258.01907 * 29 21 19 46 46 H 1.09005 * 110.24875 * 136.01900 * 29 21 19 47 47 H 1.08000 * 119.91793 * 179.72580 * 30 12 11 48 48 H 1.08002 * 120.08217 * 180.25680 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6179 0.0000 4 1 3.7027 1.3466 0.0006 5 1 1.8840 2.3966 -1.2125 6 1 1.8838 2.3965 1.2125 7 6 2.0083 -1.2115 0.0005 8 1 3.0859 -1.2129 -0.0717 9 6 1.3058 -2.4322 0.0955 10 6 1.8650 -3.5180 0.7974 11 6 1.1801 -4.6940 0.8852 12 6 -0.0713 -4.8230 0.2828 13 7 -0.7648 -6.0267 0.3774 14 6 -2.1089 -6.0240 0.4779 15 8 -2.7201 -4.9788 0.4076 16 6 -2.8520 -7.3197 0.6776 17 1 -2.6578 -8.0091 -0.1440 18 6 -2.4891 -7.9619 2.0366 19 6 -3.7898 -8.5665 2.5196 20 8 -3.8856 -9.3950 3.4001 21 7 -4.8229 -8.0528 1.8301 22 6 -6.2237 -8.4273 2.0387 23 6 -6.5722 -9.5879 1.1427 24 6 -7.0696 -9.3564 -0.1261 25 6 -7.3852 -10.4209 -0.9496 26 6 -7.2119 -11.7169 -0.5010 27 6 -6.7194 -11.9484 0.7698 28 6 -6.3998 -10.8838 1.5917 29 6 -4.3674 -7.0681 0.8418 30 6 -0.6290 -3.7541 -0.4186 31 6 0.0417 -2.5702 -0.5105 32 1 -0.4850 0.8400 -0.0004 33 1 2.8337 -3.4194 1.2647 34 1 1.6077 -5.5275 1.4226 35 1 -0.2806 -6.8672 0.3708 36 1 -1.7341 -8.7366 1.9029 37 1 -2.1386 -7.2028 2.7359 38 1 -6.3719 -8.7148 3.0797 39 1 -6.8659 -7.5793 1.8010 40 1 -7.2088 -8.3439 -0.4752 41 1 -7.7696 -10.2401 -1.9426 42 1 -7.4609 -12.5485 -1.1434 43 1 -6.5844 -12.9609 1.1205 44 1 -6.0149 -11.0647 2.5845 45 1 -4.5444 -6.0568 1.2078 46 1 -4.8802 -7.2215 -0.1077 47 1 -1.5965 -3.8628 -0.8862 48 1 -0.3933 -1.7421 -1.0504 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014171310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:29 Heat of formation + Delta-G solvation = -17.676648 kcal Electronic energy + Delta-G solvation = -30965.488719 eV Core-core repulsion = 26756.783487 eV Total energy + Delta-G solvation = -4208.705231 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 3.61 seconds Orbital eigenvalues (eV) -41.03622 -39.68285 -39.10970 -37.41964 -36.31830 -34.53516 -34.00681 -32.92166 -31.19150 -31.02916 -29.56055 -28.98216 -27.85285 -26.66914 -25.12059 -23.31306 -22.77243 -21.84834 -21.41517 -20.82726 -19.64032 -19.54724 -17.63463 -17.33528 -17.19026 -16.97021 -16.37964 -15.95291 -15.70096 -15.28718 -15.19656 -14.94525 -14.71845 -14.03517 -14.01224 -13.79725 -13.71731 -13.59512 -13.40662 -12.99659 -12.87980 -12.81875 -12.60100 -12.31933 -12.11578 -11.86035 -11.68041 -11.63418 -11.50530 -11.41631 -11.26778 -11.19553 -10.93988 -10.54890 -10.17196 -9.97133 -9.89173 -9.53284 -9.21434 -9.16133 -9.08101 -8.93176 -8.79265 -7.57199 -6.95020 -6.63342 -4.37338 0.95303 1.11074 2.38929 2.46235 2.75731 2.92420 3.04482 3.08732 3.13405 3.23405 3.49881 3.59390 3.96063 4.07735 4.20154 4.45337 4.51892 4.65472 4.69710 4.71428 4.74297 4.83928 4.92321 5.11826 5.16898 5.26919 5.32237 5.33896 5.40679 5.55918 5.61884 5.66762 5.74954 5.76966 6.08915 6.15036 6.21272 6.21746 6.29870 6.33337 6.69041 6.70977 6.86622 6.92813 7.00122 7.15272 7.24714 7.58291 7.61118 7.90681 7.95557 8.05528 8.10807 8.28793 8.60344 8.65785 8.89763 8.96295 10.27440 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.021407 B = 0.001736 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.654870 B =16125.287468 C =16576.398246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.068 3.932 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.204 4.204 11 C -0.111 4.111 12 C 0.000 4.000 13 N -0.646 5.646 14 C 0.510 3.490 15 O -0.521 6.521 16 C -0.121 4.121 17 H 0.114 0.886 18 C -0.145 4.145 19 C 0.523 3.477 20 O -0.531 6.531 21 N -0.613 5.613 22 C 0.165 3.835 23 C -0.110 4.110 24 C -0.104 4.104 25 C -0.124 4.124 26 C -0.117 4.117 27 C -0.124 4.124 28 C -0.097 4.097 29 C 0.117 3.883 30 C -0.092 4.092 31 C -0.145 4.145 32 H 0.278 0.722 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.396 0.604 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.096 0.904 46 H 0.083 0.917 47 H 0.107 0.893 48 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.550 -18.748 -0.875 22.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.224 4.224 11 C -0.131 4.131 12 C -0.092 4.092 13 N -0.289 5.289 14 C 0.295 3.705 15 O -0.397 6.397 16 C -0.143 4.143 17 H 0.132 0.868 18 C -0.185 4.185 19 C 0.311 3.689 20 O -0.408 6.408 21 N -0.347 5.347 22 C 0.044 3.956 23 C -0.111 4.111 24 C -0.123 4.123 25 C -0.142 4.142 26 C -0.135 4.135 27 C -0.142 4.142 28 C -0.115 4.115 29 C -0.006 4.006 30 C -0.112 4.112 31 C -0.165 4.165 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.229 0.771 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.114 0.886 46 H 0.101 0.899 47 H 0.125 0.875 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.323 -18.264 -0.420 22.611 hybrid contribution 0.595 0.296 -0.019 0.665 sum -12.728 -17.968 -0.439 22.024 Atomic orbital electron populations 1.69791 1.07257 1.28712 1.37576 1.25903 0.94945 1.01223 0.92623 0.86153 0.80534 0.80881 0.78438 1.18591 1.19968 1.19986 1.19533 0.94728 0.90221 1.44731 0.90551 1.17751 0.92256 0.91891 0.88344 1.20695 1.01149 0.94649 1.05873 1.20081 0.94889 0.97536 1.00638 1.17257 0.95145 0.87035 1.09720 1.42923 1.05892 1.08550 1.71508 1.19956 0.82831 0.89803 0.77919 1.90735 1.67201 1.32621 1.49160 1.22209 0.95817 0.97008 0.99285 0.86803 1.22361 0.97137 1.02312 0.96688 1.20800 0.86440 0.80636 0.81011 1.90707 1.86298 1.32791 1.31001 1.48322 1.06216 1.41863 1.38271 1.20266 0.80866 0.95179 0.99306 1.20243 1.00141 0.95056 0.95640 1.21094 0.98574 0.99247 0.93375 1.21154 1.00523 0.92736 0.99766 1.21199 0.99259 0.96987 0.96095 1.21182 0.99549 0.99043 0.94384 1.21190 0.98130 0.92026 1.00204 1.22015 0.92261 0.93407 0.92867 1.20627 0.98991 0.93280 0.98322 1.21309 0.96998 0.96075 1.02119 0.91093 0.88504 0.89082 0.77053 0.87221 0.87011 0.88993 0.89129 0.85955 0.85994 0.86160 0.86075 0.85661 0.88575 0.89855 0.87486 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.10 10.59 55.55 0.59 -20.51 16 2 C 0.07 1.72 5.42 -17.34 -0.09 1.63 16 3 Si 0.91 18.81 29.56 -169.99 -5.03 13.79 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.46 -12.07 9.02 -37.85 -0.34 -12.41 16 8 H 0.08 1.91 7.85 -52.48 -0.41 1.50 16 9 C 0.10 2.62 5.55 -106.80 -0.59 2.02 16 10 C -0.20 -4.76 9.74 -39.26 -0.38 -5.15 16 11 C -0.11 -2.31 9.90 -39.79 -0.39 -2.71 16 12 C 0.00 0.01 6.30 -83.57 -0.53 -0.52 16 13 N -0.65 -10.05 5.29 -9.74 -0.05 -10.10 16 14 C 0.51 7.71 6.89 -10.98 -0.08 7.63 16 15 O -0.52 -10.16 12.97 5.56 0.07 -10.09 16 16 C -0.12 -1.26 3.54 -90.14 -0.32 -1.58 16 17 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 18 C -0.14 -1.48 6.41 -26.71 -0.17 -1.65 16 19 C 0.52 6.41 8.02 -10.83 -0.09 6.32 16 20 O -0.53 -8.10 17.59 5.56 0.10 -8.00 16 21 N -0.61 -6.42 2.91 -173.76 -0.51 -6.92 16 22 C 0.17 1.49 6.06 -5.20 -0.03 1.45 16 23 C -0.11 -1.00 5.46 -104.62 -0.57 -1.57 16 24 C -0.10 -0.86 9.70 -39.58 -0.38 -1.24 16 25 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 26 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 27 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 28 C -0.10 -0.93 9.70 -39.58 -0.38 -1.32 16 29 C 0.12 1.20 6.69 -3.12 -0.02 1.18 16 30 C -0.09 -2.18 8.61 -39.79 -0.34 -2.52 16 31 C -0.14 -3.77 8.61 -39.26 -0.34 -4.11 16 32 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 33 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 34 H 0.09 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.40 4.63 8.82 -40.82 -0.36 4.27 16 36 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.11 1.24 7.89 -51.93 -0.41 0.83 16 38 H 0.09 0.86 7.87 -51.92 -0.41 0.46 16 39 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 44 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 45 H 0.10 1.16 7.01 -51.93 -0.36 0.79 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.11 2.51 6.24 -52.49 -0.33 2.19 16 48 H 0.13 3.56 6.13 -52.49 -0.32 3.24 16 LS Contribution 405.03 15.07 6.10 6.10 Total: -1.00 -32.08 405.03 -11.36 -43.44 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -6.39 Total: 10.92 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -6.25 Total: -18.62 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.03 Total: -37.54 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.17 Total: -18.09 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.08 -11.36 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014171310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.760 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.61 seconds