Wall clock time and date at job start Tue Mar 31 2020 06:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86804 * 119.99794 * 2 1 4 4 H 1.48498 * 109.47121 * 239.99773 * 3 2 1 5 5 H 1.48502 * 109.47196 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 120.00179 * 3 2 1 7 7 C 1.38616 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99511 * 179.97438 * 7 2 1 9 9 O 1.34807 * 120.00132 * 0.02562 * 7 2 1 10 10 C 1.35788 * 117.00029 * 174.68824 * 9 7 2 11 11 C 1.38913 * 119.99355 * 6.45610 * 10 9 7 12 12 C 1.37991 * 120.00674 * 180.02562 * 11 10 9 13 13 C 1.38956 * 119.99507 * 359.97438 * 12 11 10 14 14 N 1.39834 * 120.00931 * 180.02562 * 13 12 11 15 15 C 1.39130 * 119.99998 * 40.19628 * 14 13 12 16 16 C 1.40878 * 119.59091 * 7.92707 * 15 14 13 17 17 C 1.35905 * 120.10054 * 180.02562 * 16 15 14 18 18 C 1.40803 * 119.13791 * 359.97438 * 17 16 15 19 19 N 1.32360 * 133.77922 * 179.97438 * 18 17 16 20 20 N 1.28751 * 109.23950 * 180.02562 * 19 18 17 21 21 C 1.31035 * 110.16714 * 0.02562 * 20 19 18 22 22 C 1.50696 * 126.15781 * 179.97438 * 21 20 19 23 23 F 1.39900 * 109.47157 * 14.97315 * 22 21 20 24 24 F 1.39897 * 109.47368 * 134.97975 * 22 21 20 25 25 F 1.39911 * 109.46917 * 254.97723 * 22 21 20 26 26 N 1.35000 * 107.68518 * 0.02562 * 21 20 19 27 27 N 1.31271 * 119.59396 * 187.90874 * 15 14 13 28 28 C 1.38965 * 119.98663 * 0.27487 * 13 12 11 29 29 C 1.37989 * 119.99390 * 359.49392 * 28 13 12 30 30 H 0.97003 * 120.00096 * 359.97438 * 1 2 3 31 31 H 1.08002 * 119.99564 * 359.97438 * 11 10 9 32 32 H 1.07998 * 120.00137 * 179.97438 * 12 11 10 33 33 H 0.97004 * 119.99833 * 220.20714 * 14 13 12 34 34 H 1.07993 * 119.94814 * 359.97438 * 16 15 14 35 35 H 1.07996 * 120.43015 * 180.25414 * 17 16 15 36 36 H 1.07999 * 120.00259 * 179.72512 * 28 13 12 37 37 H 1.08001 * 119.99818 * 180.22704 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1036 1.6965 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1036 1.6965 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2004 -0.0010 9 8 1.3348 -2.3679 -0.0016 10 6 2.0699 -3.5041 -0.1141 11 6 3.4573 -3.4392 -0.0863 12 6 4.2046 -4.5935 -0.2011 13 6 3.5692 -5.8210 -0.3440 14 7 4.3262 -6.9910 -0.4598 15 6 5.4649 -7.1630 0.3208 16 6 5.7557 -6.2357 1.3408 17 6 6.8655 -6.3934 2.1092 18 6 7.7139 -7.4916 1.8710 19 7 8.8385 -7.9170 2.4245 20 7 9.2240 -8.9918 1.8296 21 6 8.3813 -9.3082 0.8774 22 6 8.4853 -10.4968 -0.0432 23 9 9.4171 -11.4048 0.4711 24 9 7.2361 -11.1181 -0.1457 25 9 8.8995 -10.0707 -1.3098 26 7 7.4038 -8.3772 0.8688 27 7 6.2550 -8.1874 0.0981 28 6 2.1814 -5.8851 -0.3769 29 6 1.4345 -4.7310 -0.2573 30 1 -0.4850 0.8401 0.0004 31 1 3.9511 -2.4850 0.0243 32 1 5.2831 -4.5429 -0.1799 33 1 4.0574 -7.6827 -1.0846 34 1 5.0961 -5.3979 1.5118 35 1 7.0914 -5.6881 2.8952 36 1 1.6874 -6.8385 -0.4924 37 1 0.3559 -4.7812 -0.2792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000014232839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:11 Heat of formation + Delta-G solvation = 16.542687 kcal Electronic energy + Delta-G solvation = -31095.461261 eV Core-core repulsion = 26041.583802 eV Total energy + Delta-G solvation = -5053.877459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.084 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.53594 -48.04929 -48.04523 -43.82332 -40.30832 -39.03191 -37.33252 -35.06082 -34.40494 -32.55351 -31.50349 -31.36580 -30.59923 -28.00578 -26.96844 -25.60941 -25.18409 -23.77984 -22.36602 -22.31947 -21.50806 -19.72562 -19.01112 -19.00357 -18.59631 -18.29689 -18.17616 -17.38781 -16.97123 -16.85647 -16.16932 -15.04698 -14.88553 -14.84499 -14.80665 -14.43200 -14.38321 -14.27645 -14.16071 -14.14311 -14.04153 -13.92244 -13.78363 -13.45472 -13.09839 -12.98553 -12.55797 -12.31239 -11.92936 -11.84945 -11.77167 -11.43242 -11.32224 -11.06527 -10.95890 -10.72467 -10.65265 -9.75884 -9.39939 -9.23516 -8.86485 -8.66488 -7.29339 -6.71185 -4.29393 -0.04911 0.58303 0.94695 1.70260 1.74701 1.90629 2.04971 2.75078 2.77894 2.98009 2.99107 3.02638 3.04448 3.53137 3.62321 3.74932 3.90098 3.91943 4.06486 4.14782 4.59148 4.80199 4.84061 4.94384 5.11722 5.13271 5.18948 5.24149 5.31415 5.60826 5.78199 5.82150 5.88532 6.32307 6.46265 6.51322 6.73114 6.87213 7.02927 7.05990 7.25287 7.51087 7.71318 7.78183 8.73108 9.36993 10.45186 Molecular weight = 365.08amu Principal moments of inertia in cm(-1) A = 0.020518 B = 0.001965 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.347320 B =14242.574638 C =15037.435270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.043 3.957 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.395 4.395 8 H 0.095 0.905 9 O -0.165 6.165 10 C 0.150 3.850 11 C -0.214 4.214 12 C -0.090 4.090 13 C 0.024 3.976 14 N -0.612 5.612 15 C 0.423 3.577 16 C -0.155 4.155 17 C -0.006 4.006 18 C 0.156 3.844 19 N -0.242 5.242 20 N -0.202 5.202 21 C 0.089 3.911 22 C 0.578 3.422 23 F -0.150 7.150 24 F -0.158 7.158 25 F -0.161 7.161 26 N -0.241 5.241 27 N -0.347 5.347 28 C -0.077 4.077 29 C -0.169 4.169 30 H 0.275 0.725 31 H 0.136 0.864 32 H 0.115 0.885 33 H 0.418 0.582 34 H 0.180 0.820 35 H 0.179 0.821 36 H 0.121 0.879 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.537 -13.726 0.562 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.471 4.471 8 H 0.112 0.888 9 O -0.067 6.067 10 C 0.094 3.906 11 C -0.234 4.234 12 C -0.111 4.111 13 C -0.069 4.069 14 N -0.240 5.240 15 C 0.159 3.841 16 C -0.183 4.183 17 C -0.033 4.033 18 C -0.099 4.099 19 N -0.093 5.093 20 N -0.052 5.052 21 C -0.176 4.176 22 C 0.520 3.480 23 F -0.131 7.131 24 F -0.139 7.139 25 F -0.142 7.142 26 N -0.014 5.014 27 N -0.180 5.180 28 C -0.097 4.097 29 C -0.189 4.189 30 H 0.085 0.915 31 H 0.154 0.846 32 H 0.133 0.867 33 H 0.256 0.744 34 H 0.197 0.803 35 H 0.196 0.804 36 H 0.139 0.861 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.281 -14.252 0.884 18.197 hybrid contribution -0.671 1.054 -0.741 1.453 sum 10.610 -13.198 0.143 16.934 Atomic orbital electron populations 1.70026 1.06068 1.28366 1.44130 1.25352 0.95901 0.99085 0.96022 0.85744 0.78796 0.79378 0.79398 1.19300 1.20084 1.19265 1.21324 0.91895 0.80576 1.53310 0.88762 1.83985 1.34505 1.11570 1.76592 1.19423 0.90209 0.88255 0.92744 1.21042 0.93674 0.98522 1.10130 1.20733 0.98716 0.90875 1.00756 1.17090 0.89910 0.83819 1.16055 1.41564 1.22085 1.20369 1.39991 1.19325 0.87376 0.89288 0.88141 1.22055 0.99362 1.01849 0.95013 1.20469 0.90427 0.93341 0.99060 1.22657 0.98186 0.96424 0.92659 1.75081 1.07727 1.05494 1.21043 1.74603 1.19784 1.07705 1.03057 1.23714 0.91352 0.97254 1.05301 1.16197 0.74751 0.79613 0.77408 1.93278 1.65532 1.67530 1.86738 1.93285 1.41323 1.83327 1.96013 1.93285 1.90162 1.89790 1.40971 1.46611 1.15502 1.17385 1.21864 1.75755 0.97671 1.25024 1.19578 1.20401 0.90975 0.97912 1.00452 1.20087 0.99932 0.89728 1.09189 0.91545 0.84626 0.86670 0.74428 0.80319 0.80387 0.86103 0.85511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.76 13.67 55.48 0.76 -22.00 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 18.44 29.55 -169.99 -5.02 13.41 16 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 6 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.40 -9.69 9.48 30.87 0.29 -9.40 16 8 H 0.10 2.08 5.20 -52.48 -0.27 1.81 16 9 O -0.16 -4.07 9.75 0.00 0.00 -4.07 16 10 C 0.15 2.95 6.65 -39.08 -0.26 2.69 16 11 C -0.21 -3.64 9.16 -39.42 -0.36 -4.00 16 12 C -0.09 -1.24 7.30 -39.41 -0.29 -1.53 16 13 C 0.02 0.31 5.91 -83.67 -0.49 -0.19 16 14 N -0.61 -6.62 5.49 -9.73 -0.05 -6.67 16 15 C 0.42 4.88 7.51 -155.18 -1.17 3.72 16 16 C -0.16 -1.57 7.91 -39.42 -0.31 -1.88 16 17 C -0.01 -0.06 10.11 -39.45 -0.40 -0.45 16 18 C 0.16 2.00 7.99 -156.06 -1.25 0.76 16 19 N -0.24 -3.47 12.33 31.14 0.38 -3.09 16 20 N -0.20 -2.97 12.04 32.79 0.39 -2.57 16 21 C 0.09 1.23 7.52 -155.01 -1.17 0.07 16 22 C 0.58 6.96 3.57 36.00 0.13 7.09 16 23 F -0.15 -1.71 17.18 2.25 0.04 -1.67 16 24 F -0.16 -1.90 17.30 2.25 0.04 -1.86 16 25 F -0.16 -1.93 17.30 2.25 0.04 -1.89 16 26 N -0.24 -3.31 4.02 -9.60 -0.04 -3.35 16 27 N -0.35 -4.52 11.96 31.33 0.37 -4.15 16 28 C -0.08 -1.02 9.96 -39.40 -0.39 -1.41 16 29 C -0.17 -2.82 9.98 -39.42 -0.39 -3.21 16 30 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.14 2.33 5.64 -52.49 -0.30 2.03 16 32 H 0.12 1.35 6.50 -52.49 -0.34 1.01 16 33 H 0.42 3.84 8.95 -40.82 -0.37 3.47 16 34 H 0.18 1.71 5.26 -52.49 -0.28 1.43 16 35 H 0.18 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 344.51 15.07 5.19 5.19 Total: -1.00 -28.47 344.51 -6.00 -34.48 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -1.95 Total: 5.02 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -6.15 Total: -6.79 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 1.82 Total: -41.83 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: 0.00 Total: -4.07 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.12 Total: -5.41 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.41 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.47 -6.00 -34.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014232839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.019 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds