Wall clock time and date at job start Tue Mar 31 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86804 * 119.99794 * 2 1 4 4 H 1.48498 * 109.47121 * 239.99773 * 3 2 1 5 5 H 1.48502 * 109.47196 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47028 * 120.00179 * 3 2 1 7 7 C 1.38616 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99511 * 179.97438 * 7 2 1 9 9 O 1.34807 * 120.00132 * 0.02562 * 7 2 1 10 10 C 1.35788 * 117.00029 * 174.68824 * 9 7 2 11 11 C 1.38913 * 119.99355 * 6.45610 * 10 9 7 12 12 C 1.37991 * 120.00674 * 180.02562 * 11 10 9 13 13 C 1.38956 * 119.99507 * 359.97438 * 12 11 10 14 14 N 1.39834 * 120.00931 * 180.02562 * 13 12 11 15 15 C 1.39130 * 119.99998 * 40.19628 * 14 13 12 16 16 C 1.40878 * 119.59091 * 7.92707 * 15 14 13 17 17 C 1.35905 * 120.10054 * 180.02562 * 16 15 14 18 18 C 1.40803 * 119.13791 * 359.97438 * 17 16 15 19 19 N 1.32360 * 133.77922 * 179.97438 * 18 17 16 20 20 N 1.28751 * 109.23950 * 180.02562 * 19 18 17 21 21 C 1.31035 * 110.16714 * 0.02562 * 20 19 18 22 22 C 1.50696 * 126.15781 * 179.97438 * 21 20 19 23 23 F 1.39900 * 109.47157 * 14.97315 * 22 21 20 24 24 F 1.39897 * 109.47368 * 134.97975 * 22 21 20 25 25 F 1.39911 * 109.46917 * 254.97723 * 22 21 20 26 26 N 1.35000 * 107.68518 * 0.02562 * 21 20 19 27 27 N 1.31271 * 119.59396 * 187.90874 * 15 14 13 28 28 C 1.38965 * 119.98663 * 0.27487 * 13 12 11 29 29 C 1.37989 * 119.99390 * 359.49392 * 28 13 12 30 30 H 0.97003 * 120.00096 * 359.97438 * 1 2 3 31 31 H 1.08002 * 119.99564 * 359.97438 * 11 10 9 32 32 H 1.07998 * 120.00137 * 179.97438 * 12 11 10 33 33 H 0.97004 * 119.99833 * 220.20714 * 14 13 12 34 34 H 1.07993 * 119.94814 * 359.97438 * 16 15 14 35 35 H 1.07996 * 120.43015 * 180.25414 * 17 16 15 36 36 H 1.07999 * 120.00259 * 179.72512 * 28 13 12 37 37 H 1.08001 * 119.99818 * 180.22704 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1036 1.6965 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1036 1.6965 1.2125 7 6 2.0089 -1.2005 -0.0005 8 1 3.0889 -1.2004 -0.0010 9 8 1.3348 -2.3679 -0.0016 10 6 2.0699 -3.5041 -0.1141 11 6 3.4573 -3.4392 -0.0863 12 6 4.2046 -4.5935 -0.2011 13 6 3.5692 -5.8210 -0.3440 14 7 4.3262 -6.9910 -0.4598 15 6 5.4649 -7.1630 0.3208 16 6 5.7557 -6.2357 1.3408 17 6 6.8655 -6.3934 2.1092 18 6 7.7139 -7.4916 1.8710 19 7 8.8385 -7.9170 2.4245 20 7 9.2240 -8.9918 1.8296 21 6 8.3813 -9.3082 0.8774 22 6 8.4853 -10.4968 -0.0432 23 9 9.4171 -11.4048 0.4711 24 9 7.2361 -11.1181 -0.1457 25 9 8.8995 -10.0707 -1.3098 26 7 7.4038 -8.3772 0.8688 27 7 6.2550 -8.1874 0.0981 28 6 2.1814 -5.8851 -0.3769 29 6 1.4345 -4.7310 -0.2573 30 1 -0.4850 0.8401 0.0004 31 1 3.9511 -2.4850 0.0243 32 1 5.2831 -4.5429 -0.1799 33 1 4.0574 -7.6827 -1.0846 34 1 5.0961 -5.3979 1.5118 35 1 7.0914 -5.6881 2.8952 36 1 1.6874 -6.8385 -0.4924 37 1 0.3559 -4.7812 -0.2792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000014232839.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:10 Heat of formation + Delta-G solvation = 1.034048 kcal Electronic energy + Delta-G solvation = -31096.133766 eV Core-core repulsion = 26041.583802 eV Total energy + Delta-G solvation = -5054.549964 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.084 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -51.48397 -49.00094 -48.98311 -44.83743 -41.43823 -40.31412 -38.61768 -36.24313 -35.33960 -34.22107 -32.58607 -32.42337 -31.79803 -29.26130 -27.97561 -27.23690 -26.17401 -24.81837 -23.62963 -23.34174 -22.73345 -20.75806 -20.08674 -19.96066 -19.81823 -19.34039 -19.32182 -18.76548 -18.00093 -17.89312 -17.32021 -16.40386 -16.24712 -15.80558 -15.78650 -15.57709 -15.49147 -15.37646 -15.23345 -15.10355 -15.08821 -15.00486 -14.90277 -14.53738 -14.37828 -14.21530 -13.64829 -13.55704 -13.37754 -13.13389 -12.86475 -12.67648 -12.48270 -12.40818 -12.15064 -12.13274 -11.70477 -11.25480 -10.86395 -10.28235 -10.16281 -9.89294 -8.61177 -8.44932 -6.11423 -0.92910 -0.41388 -0.05554 0.46301 0.52564 0.91959 0.98163 1.40440 1.48654 1.54756 1.79223 1.83419 2.08105 2.19516 2.58894 2.69881 2.77267 2.94722 3.00479 3.12840 3.18160 3.52207 3.63788 3.89455 3.97049 4.04782 4.15148 4.39890 4.45399 4.49038 4.60561 4.62520 4.85693 5.05921 5.11248 5.26990 5.38385 5.54527 5.66704 5.95832 6.02380 6.08165 6.48329 6.74586 7.00371 7.78519 8.76899 Molecular weight = 365.08amu Principal moments of inertia in cm(-1) A = 0.020518 B = 0.001965 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.347320 B =14242.574638 C =15037.435270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.012 2.988 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.409 4.409 8 H 0.109 0.891 9 O -0.225 6.225 10 C 0.113 3.887 11 C -0.213 4.213 12 C -0.085 4.085 13 C 0.064 3.936 14 N -0.606 5.606 15 C 0.424 3.576 16 C -0.157 4.157 17 C 0.009 3.991 18 C 0.154 3.846 19 N -0.261 5.261 20 N -0.219 5.219 21 C 0.082 3.918 22 C 0.584 3.416 23 F -0.146 7.146 24 F -0.157 7.157 25 F -0.160 7.160 26 N -0.250 5.250 27 N -0.357 5.357 28 C -0.066 4.066 29 C -0.175 4.175 30 H 0.272 0.728 31 H 0.131 0.869 32 H 0.144 0.856 33 H 0.430 0.570 34 H 0.190 0.810 35 H 0.215 0.785 36 H 0.158 0.842 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.683 -15.327 0.607 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.219 4.219 3 Si 0.832 3.168 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.179 1.179 7 C -0.485 4.485 8 H 0.126 0.874 9 O -0.131 6.131 10 C 0.062 3.938 11 C -0.233 4.233 12 C -0.105 4.105 13 C -0.030 4.030 14 N -0.236 5.236 15 C 0.161 3.839 16 C -0.184 4.184 17 C -0.018 4.018 18 C -0.101 4.101 19 N -0.111 5.111 20 N -0.068 5.068 21 C -0.184 4.184 22 C 0.527 3.473 23 F -0.127 7.127 24 F -0.138 7.138 25 F -0.141 7.141 26 N -0.023 5.023 27 N -0.190 5.190 28 C -0.086 4.086 29 C -0.195 4.195 30 H 0.081 0.919 31 H 0.148 0.852 32 H 0.162 0.838 33 H 0.270 0.730 34 H 0.207 0.793 35 H 0.232 0.768 36 H 0.176 0.824 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.494 -15.944 0.925 20.909 hybrid contribution -1.110 1.033 -0.768 1.699 sum 12.384 -14.912 0.157 19.384 Atomic orbital electron populations 1.70174 1.07984 1.28836 1.48534 1.26496 0.96719 1.02687 0.95978 0.84719 0.77426 0.74645 0.79987 1.18291 1.20345 1.17928 1.21779 0.92659 0.81192 1.52847 0.87386 1.83964 1.35987 1.12609 1.80539 1.19993 0.91600 0.88071 0.94143 1.21094 0.92742 0.99662 1.09755 1.20928 0.99951 0.89929 0.99674 1.17125 0.89897 0.84241 1.11718 1.41422 1.21696 1.19967 1.40475 1.19442 0.86911 0.89260 0.88330 1.22131 0.99707 1.01834 0.94731 1.20921 0.89124 0.92483 0.99266 1.23167 0.98029 0.96849 0.92078 1.75027 1.08625 1.05755 1.21672 1.74553 1.20439 1.08169 1.03614 1.23949 0.91359 0.97705 1.05360 1.16049 0.74822 0.79286 0.77187 1.93286 1.65411 1.67325 1.86703 1.93285 1.41310 1.83240 1.95992 1.93286 1.90163 1.89805 1.40866 1.46706 1.15719 1.17622 1.22273 1.75721 0.97736 1.25787 1.19775 1.20705 0.91142 0.98192 0.98570 1.20305 1.00388 0.89829 1.09002 0.91926 0.85156 0.83839 0.73003 0.79305 0.76806 0.82399 0.85793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.18 13.67 21.61 0.30 -51.88 16 2 C -0.02 -1.06 5.49 84.82 0.47 -0.60 16 3 Si 1.01 38.87 29.55 68.60 2.03 40.89 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.26 -9.08 7.11 99.48 0.71 -8.38 16 7 C -0.41 -20.90 9.48 67.91 0.64 -20.26 16 8 H 0.11 4.88 5.20 -2.91 -0.02 4.87 16 9 O -0.23 -11.73 9.75 -22.93 -0.22 -11.95 16 10 C 0.11 4.53 6.65 22.59 0.15 4.68 16 11 C -0.21 -6.96 9.16 22.37 0.20 -6.76 16 12 C -0.08 -2.01 7.30 22.38 0.16 -1.84 16 13 C 0.06 1.35 5.91 38.21 0.23 1.58 16 14 N -0.61 -10.26 5.49 -184.69 -1.01 -11.28 16 15 C 0.42 8.01 7.51 133.78 1.01 9.02 16 16 C -0.16 -2.47 7.91 22.37 0.18 -2.29 16 17 C 0.01 0.13 10.11 22.36 0.23 0.36 16 18 C 0.15 3.52 7.99 134.06 1.07 4.59 16 19 N -0.26 -6.94 12.33 -55.41 -0.68 -7.62 16 20 N -0.22 -6.11 12.04 -50.19 -0.60 -6.71 16 21 C 0.08 2.12 7.52 137.98 1.04 3.16 16 22 C 0.58 13.10 3.57 71.23 0.25 13.36 16 23 F -0.15 -3.13 17.18 44.97 0.77 -2.36 16 24 F -0.16 -3.47 17.30 44.97 0.78 -2.69 16 25 F -0.16 -3.56 17.30 44.97 0.78 -2.78 16 26 N -0.25 -6.22 4.02 -184.30 -0.74 -6.96 16 27 N -0.36 -8.10 11.96 -54.78 -0.66 -8.76 16 28 C -0.07 -1.51 9.96 22.38 0.22 -1.29 16 29 C -0.18 -5.68 9.98 22.37 0.22 -5.45 16 30 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 31 H 0.13 4.38 5.64 -2.91 -0.02 4.36 16 32 H 0.14 2.67 6.50 -2.91 -0.02 2.65 16 33 H 0.43 5.82 8.95 -92.71 -0.83 4.99 16 34 H 0.19 2.68 5.26 -2.91 -0.02 2.66 16 35 H 0.22 1.61 8.06 -2.91 -0.02 1.58 16 36 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.12 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -66.73 344.51 7.19 -59.54 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.38 Total: 14.30 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 6.07 Total: -1.74 kcal Atomic # 7 Polarization: -89.81 SS G_CDS: -3.40 Total: -93.21 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.22 Total: -11.95 kcal Atomic # 9 Polarization: -10.16 SS G_CDS: 2.33 Total: -7.83 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.89 kcal Total: -66.73 7.19 -59.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000014232839.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.575 kcal (2) G-P(sol) polarization free energy of solvation -66.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds