Wall clock time and date at job start Tue Mar 31 2020 05:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86804 * 119.99860 * 2 1 4 4 H 1.48496 * 109.47308 * 269.99971 * 3 2 1 5 5 H 1.48501 * 109.47212 * 30.00089 * 3 2 1 6 6 H 1.48500 * 109.46895 * 149.99891 * 3 2 1 7 7 C 1.39904 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99778 * 189.90572 * 7 2 1 9 9 C 1.41148 * 120.00105 * 9.90172 * 7 2 1 10 10 C 1.40870 * 120.16539 * 209.31566 * 9 7 2 11 11 C 1.36367 * 119.82907 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.17199 * 359.97438 * 11 10 9 13 13 N 1.39236 * 119.83537 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00068 * 33.66647 * 13 12 11 15 15 O 1.21282 * 120.00112 * 5.20880 * 14 13 12 16 16 C 1.50700 * 119.99830 * 185.20296 * 14 13 12 17 17 C 1.50697 * 109.46937 * 180.02562 * 16 14 13 18 18 C 1.38282 * 119.92954 * 269.72456 * 17 16 14 19 19 C 1.38113 * 120.07238 * 179.76593 * 18 17 16 20 20 C 1.38870 * 119.92605 * 0.50948 * 19 18 17 21 21 N 1.39932 * 120.07031 * 179.72594 * 20 19 18 22 22 C 1.46755 * 124.35120 * 174.33475 * 21 20 19 23 23 C 1.54475 * 105.47665 * 197.01331 * 22 21 20 24 24 C 1.54627 * 101.76356 * 334.58500 * 23 22 21 25 25 C 1.34416 * 124.34853 * 354.03032 * 21 20 19 26 26 O 1.21289 * 124.94072 * 359.57924 * 25 21 20 27 27 C 1.38868 * 119.86394 * 359.74290 * 20 19 18 28 28 C 1.38115 * 119.92657 * 0.02562 * 27 20 19 29 29 C 1.39484 * 120.32772 * 0.26104 * 12 11 10 30 30 C 1.36371 * 120.16873 * 359.47756 * 29 12 11 31 31 H 0.97006 * 119.99988 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.08420 * 359.97438 * 10 9 7 33 33 H 1.08007 * 119.91827 * 179.97438 * 11 10 9 34 34 H 0.97004 * 119.99953 * 213.67079 * 13 12 11 35 35 H 1.08999 * 109.47159 * 60.00402 * 16 14 13 36 36 H 1.08998 * 109.47261 * 300.00149 * 16 14 13 37 37 H 1.07999 * 119.96158 * 0.02562 * 18 17 16 38 38 H 1.08004 * 120.03988 * 180.25415 * 19 18 17 39 39 H 1.09001 * 110.25139 * 316.01526 * 22 21 20 40 40 H 1.09008 * 110.24671 * 77.92644 * 22 21 20 41 41 H 1.08997 * 110.97475 * 92.69877 * 23 22 21 42 42 H 1.09003 * 110.97368 * 216.46888 * 23 22 21 43 43 H 1.08999 * 110.49182 * 143.47751 * 24 23 22 44 44 H 1.08997 * 110.48764 * 265.98285 * 24 23 22 45 45 H 1.08001 * 120.03788 * 180.02562 * 27 20 19 46 46 H 1.07999 * 119.96258 * 179.97438 * 28 27 20 47 47 H 1.08005 * 119.91236 * 179.74457 * 29 12 11 48 48 H 1.08000 * 120.08282 * 180.26199 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0465 -1.4000 5 1 1.4401 2.6527 0.7001 6 1 3.5402 1.4402 0.7001 7 6 2.0082 -1.2116 -0.0005 8 1 3.0761 -1.2186 0.1604 9 6 1.3183 -2.4248 -0.2113 10 6 1.7963 -3.6197 0.3615 11 6 1.1246 -4.7880 0.1530 12 6 -0.0332 -4.8018 -0.6246 13 7 -0.7132 -5.9988 -0.8334 14 6 -0.7412 -6.9357 0.1350 15 8 -0.2560 -6.6998 1.2212 16 6 -1.3756 -8.2764 -0.1318 17 6 -1.2764 -9.1337 1.1036 18 6 -0.1787 -9.9543 1.2875 19 6 -0.0824 -10.7377 2.4209 20 6 -1.0946 -10.7086 3.3712 21 7 -1.0029 -11.5054 4.5179 22 6 -1.9537 -11.4614 5.6350 23 6 -1.2358 -12.1536 6.8147 24 6 -0.2396 -13.0790 6.0784 25 6 -0.0360 -12.4134 4.7351 26 8 0.8695 -12.6612 3.9671 27 6 -2.1982 -9.8874 3.1811 28 6 -2.2862 -9.1028 2.0478 29 6 -0.5099 -3.6236 -1.1991 30 6 0.1480 -2.4466 -0.9951 31 1 -0.4850 0.8401 -0.0004 32 1 2.6929 -3.6107 0.9635 33 1 1.4901 -5.7051 0.5912 34 1 -1.1668 -6.1584 -1.6759 35 1 -0.8577 -8.7657 -0.9566 36 1 -2.4245 -8.1365 -0.3932 37 1 0.6062 -9.9795 0.5461 38 1 0.7771 -11.3754 2.5661 39 1 -2.1884 -10.4281 5.8903 40 1 -2.8645 -12.0017 5.3767 41 1 -0.7089 -11.4260 7.4320 42 1 -1.9384 -12.7341 7.4126 43 1 0.7018 -13.1379 6.6247 44 1 -0.6669 -14.0732 5.9486 45 1 -2.9869 -9.8623 3.9186 46 1 -3.1444 -8.4643 1.8992 47 1 -1.4049 -3.6427 -1.8035 48 1 -0.2247 -1.5344 -1.4371 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015030498.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:15 Heat of formation + Delta-G solvation = -16.768556 kcal Electronic energy + Delta-G solvation = -30542.147265 eV Core-core repulsion = 26333.481411 eV Total energy + Delta-G solvation = -4208.665854 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 5.36 seconds Orbital eigenvalues (eV) -41.32526 -39.83350 -38.65354 -37.19958 -36.88962 -34.43818 -33.87303 -32.91747 -31.21378 -30.98619 -29.56628 -28.92505 -28.12030 -27.07373 -24.78293 -23.48591 -22.72855 -21.64183 -21.35545 -20.71056 -19.95977 -19.49412 -17.90422 -17.34297 -17.18196 -16.84092 -16.39829 -16.09003 -15.47055 -15.21842 -15.01553 -14.70236 -14.33850 -14.13473 -14.03588 -13.91237 -13.79132 -13.57368 -13.41425 -13.11357 -13.03582 -12.69431 -12.45032 -12.14085 -12.05499 -11.93883 -11.81985 -11.63617 -11.54323 -11.32954 -11.16042 -11.11675 -10.95058 -10.72120 -10.33880 -9.94622 -9.88662 -9.50842 -9.37903 -9.12653 -8.94802 -8.86215 -7.95079 -7.52928 -6.89592 -6.67118 -4.29714 1.14089 1.41117 2.28189 2.49503 2.58459 3.03892 3.08709 3.11229 3.13183 3.41659 3.62375 3.79918 3.92314 3.96170 4.03671 4.28914 4.47633 4.67673 4.72569 4.77091 4.90369 4.95261 5.02267 5.13361 5.19003 5.27150 5.30406 5.35710 5.43423 5.44411 5.54793 5.62442 5.71156 5.98124 6.10979 6.20614 6.25149 6.43061 6.44971 6.62650 6.79671 6.83767 6.94765 7.00934 7.07673 7.22394 7.30926 7.62529 7.72788 7.75806 7.91296 8.06129 8.30625 8.32593 8.62701 8.81662 8.91835 9.02571 10.25420 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.016355 B = 0.001687 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.562258 B =16597.810212 C =17302.279035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.071 3.929 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.103 3.897 10 C -0.210 4.210 11 C -0.081 4.081 12 C 0.001 3.999 13 N -0.654 5.654 14 C 0.497 3.503 15 O -0.521 6.521 16 C -0.100 4.100 17 C -0.081 4.081 18 C -0.076 4.076 19 C -0.153 4.153 20 C 0.156 3.844 21 N -0.558 5.558 22 C 0.094 3.906 23 C -0.131 4.131 24 C -0.153 4.153 25 C 0.513 3.487 26 O -0.511 6.511 27 C -0.155 4.155 28 C -0.077 4.077 29 C -0.118 4.118 30 C -0.145 4.145 31 H 0.279 0.721 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.395 0.605 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.152 0.848 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.090 0.910 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.864 -22.706 7.406 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.230 4.230 11 C -0.101 4.101 12 C -0.091 4.091 13 N -0.298 5.298 14 C 0.283 3.717 15 O -0.397 6.397 16 C -0.140 4.140 17 C -0.082 4.082 18 C -0.095 4.095 19 C -0.172 4.172 20 C 0.064 3.936 21 N -0.282 5.282 22 C -0.028 4.028 23 C -0.169 4.169 24 C -0.193 4.193 25 C 0.302 3.698 26 O -0.386 6.386 27 C -0.175 4.175 28 C -0.096 4.096 29 C -0.139 4.139 30 C -0.165 4.165 31 H 0.090 0.910 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.228 0.772 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.170 0.830 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.108 0.892 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.217 -22.539 7.817 25.232 hybrid contribution -0.121 0.879 -0.293 0.934 sum -8.338 -21.660 7.524 24.399 Atomic orbital electron populations 1.69810 1.07388 1.28929 1.36827 1.25900 0.94861 1.01216 0.92516 0.86248 0.80339 0.80552 0.79161 1.19390 1.20355 1.18695 1.19541 0.95753 0.90474 1.43128 0.90501 1.17684 0.91773 0.92188 0.88345 1.20710 1.02902 0.93284 1.06104 1.20259 0.93494 0.97701 0.98613 1.17197 0.96547 0.84384 1.10957 1.43043 1.53237 1.16536 1.16957 1.20463 0.80931 0.85722 0.84560 1.90727 1.45747 1.79801 1.23423 1.20645 1.02914 0.93184 0.97221 1.19280 0.95323 0.97379 0.96223 1.20883 0.96719 0.94792 0.97071 1.21504 0.99594 1.02237 0.93912 1.17731 0.95793 0.93454 0.86671 1.45784 1.27406 1.36905 1.18088 1.22267 0.92349 1.02959 0.85269 1.22625 0.98549 0.98987 0.96762 1.22339 1.02630 1.00452 0.93890 1.21093 0.80753 0.79116 0.88813 1.90647 1.32679 1.64280 1.51039 1.20639 0.97646 0.99717 0.99513 1.20742 0.98619 0.97358 0.92880 1.20250 0.99072 0.92081 1.02458 1.20956 0.98498 0.95998 1.01088 0.91023 0.88703 0.88045 0.77208 0.88244 0.88359 0.85737 0.83037 0.89338 0.90123 0.89476 0.88578 0.87469 0.87408 0.85910 0.85729 0.89150 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.03 10.82 55.55 0.60 -20.43 16 2 C 0.07 1.81 5.26 -17.34 -0.09 1.72 16 3 Si 0.91 18.99 29.57 -169.99 -5.03 13.96 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.46 -12.37 9.05 -37.85 -0.34 -12.71 16 8 H 0.08 2.00 7.86 -52.49 -0.41 1.58 16 9 C 0.10 2.80 5.55 -106.80 -0.59 2.20 16 10 C -0.21 -5.45 9.74 -39.26 -0.38 -5.83 16 11 C -0.08 -1.98 8.57 -39.79 -0.34 -2.32 16 12 C 0.00 0.03 6.29 -83.57 -0.53 -0.49 16 13 N -0.65 -11.41 5.31 -9.74 -0.05 -11.46 16 14 C 0.50 8.59 7.55 -10.99 -0.08 8.51 16 15 O -0.52 -11.50 13.71 5.56 0.08 -11.43 16 16 C -0.10 -1.19 5.83 -29.04 -0.17 -1.35 16 17 C -0.08 -1.08 4.38 -104.59 -0.46 -1.53 16 18 C -0.08 -1.04 9.69 -39.61 -0.38 -1.43 16 19 C -0.15 -2.17 9.28 -39.39 -0.37 -2.53 16 20 C 0.16 1.99 6.60 -83.69 -0.55 1.44 16 21 N -0.56 -5.71 3.14 -112.27 -0.35 -6.06 16 22 C 0.09 0.54 6.27 -3.13 -0.02 0.52 16 23 C -0.13 -0.48 7.18 -25.10 -0.18 -0.66 16 24 C -0.15 -0.86 6.86 -26.74 -0.18 -1.04 16 25 C 0.51 5.53 7.92 -10.86 -0.09 5.44 16 26 O -0.51 -7.44 14.82 5.55 0.08 -7.36 16 27 C -0.15 -1.78 9.41 -39.39 -0.37 -2.15 16 28 C -0.08 -0.96 9.69 -39.61 -0.38 -1.34 16 29 C -0.12 -2.72 9.89 -39.79 -0.39 -3.12 16 30 C -0.15 -3.77 8.60 -39.26 -0.34 -4.11 16 31 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 32 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 33 H 0.10 2.47 6.41 -52.48 -0.34 2.13 16 34 H 0.39 5.25 8.81 -40.82 -0.36 4.89 16 35 H 0.10 0.95 8.08 -51.93 -0.42 0.53 16 36 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.15 2.30 5.27 -52.48 -0.28 2.03 16 39 H 0.09 0.48 7.70 -51.93 -0.40 0.08 16 40 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 41 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.10 0.13 8.14 -51.93 -0.42 -0.30 16 43 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.12 1.07 7.01 -52.49 -0.37 0.70 16 46 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 47 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 48 H 0.12 3.27 6.22 -52.49 -0.33 2.95 16 LS Contribution 398.96 15.07 6.01 6.01 Total: -1.00 -35.17 398.96 -11.16 -46.33 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -6.26 Total: 11.25 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -6.24 Total: -20.81 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.20 Total: -37.96 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.16 Total: -18.78 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.17 -11.16 -46.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015030498.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.561 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.36 seconds