Wall clock time and date at job start Tue Mar 31 2020 05:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86804 * 119.99860 * 2 1 4 4 H 1.48496 * 109.47308 * 269.99971 * 3 2 1 5 5 H 1.48501 * 109.47212 * 30.00089 * 3 2 1 6 6 H 1.48500 * 109.46895 * 149.99891 * 3 2 1 7 7 C 1.39904 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99778 * 189.90572 * 7 2 1 9 9 C 1.41148 * 120.00105 * 9.90172 * 7 2 1 10 10 C 1.40870 * 120.16539 * 209.31566 * 9 7 2 11 11 C 1.36367 * 119.82907 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.17199 * 359.97438 * 11 10 9 13 13 N 1.39236 * 119.83537 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00068 * 33.66647 * 13 12 11 15 15 O 1.21282 * 120.00112 * 5.20880 * 14 13 12 16 16 C 1.50700 * 119.99830 * 185.20296 * 14 13 12 17 17 C 1.50697 * 109.46937 * 180.02562 * 16 14 13 18 18 C 1.38282 * 119.92954 * 269.72456 * 17 16 14 19 19 C 1.38113 * 120.07238 * 179.76593 * 18 17 16 20 20 C 1.38870 * 119.92605 * 0.50948 * 19 18 17 21 21 N 1.39932 * 120.07031 * 179.72594 * 20 19 18 22 22 C 1.46755 * 124.35120 * 174.33475 * 21 20 19 23 23 C 1.54475 * 105.47665 * 197.01331 * 22 21 20 24 24 C 1.54627 * 101.76356 * 334.58500 * 23 22 21 25 25 C 1.34416 * 124.34853 * 354.03032 * 21 20 19 26 26 O 1.21289 * 124.94072 * 359.57924 * 25 21 20 27 27 C 1.38868 * 119.86394 * 359.74290 * 20 19 18 28 28 C 1.38115 * 119.92657 * 0.02562 * 27 20 19 29 29 C 1.39484 * 120.32772 * 0.26104 * 12 11 10 30 30 C 1.36371 * 120.16873 * 359.47756 * 29 12 11 31 31 H 0.97006 * 119.99988 * 0.02562 * 1 2 3 32 32 H 1.07998 * 120.08420 * 359.97438 * 10 9 7 33 33 H 1.08007 * 119.91827 * 179.97438 * 11 10 9 34 34 H 0.97004 * 119.99953 * 213.67079 * 13 12 11 35 35 H 1.08999 * 109.47159 * 60.00402 * 16 14 13 36 36 H 1.08998 * 109.47261 * 300.00149 * 16 14 13 37 37 H 1.07999 * 119.96158 * 0.02562 * 18 17 16 38 38 H 1.08004 * 120.03988 * 180.25415 * 19 18 17 39 39 H 1.09001 * 110.25139 * 316.01526 * 22 21 20 40 40 H 1.09008 * 110.24671 * 77.92644 * 22 21 20 41 41 H 1.08997 * 110.97475 * 92.69877 * 23 22 21 42 42 H 1.09003 * 110.97368 * 216.46888 * 23 22 21 43 43 H 1.08999 * 110.49182 * 143.47751 * 24 23 22 44 44 H 1.08997 * 110.48764 * 265.98285 * 24 23 22 45 45 H 1.08001 * 120.03788 * 180.02562 * 27 20 19 46 46 H 1.07999 * 119.96258 * 179.97438 * 28 27 20 47 47 H 1.08005 * 119.91236 * 179.74457 * 29 12 11 48 48 H 1.08000 * 120.08282 * 180.26199 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0465 -1.4000 5 1 1.4401 2.6527 0.7001 6 1 3.5402 1.4402 0.7001 7 6 2.0082 -1.2116 -0.0005 8 1 3.0761 -1.2186 0.1604 9 6 1.3183 -2.4248 -0.2113 10 6 1.7963 -3.6197 0.3615 11 6 1.1246 -4.7880 0.1530 12 6 -0.0332 -4.8018 -0.6246 13 7 -0.7132 -5.9988 -0.8334 14 6 -0.7412 -6.9357 0.1350 15 8 -0.2560 -6.6998 1.2212 16 6 -1.3756 -8.2764 -0.1318 17 6 -1.2764 -9.1337 1.1036 18 6 -0.1787 -9.9543 1.2875 19 6 -0.0824 -10.7377 2.4209 20 6 -1.0946 -10.7086 3.3712 21 7 -1.0029 -11.5054 4.5179 22 6 -1.9537 -11.4614 5.6350 23 6 -1.2358 -12.1536 6.8147 24 6 -0.2396 -13.0790 6.0784 25 6 -0.0360 -12.4134 4.7351 26 8 0.8695 -12.6612 3.9671 27 6 -2.1982 -9.8874 3.1811 28 6 -2.2862 -9.1028 2.0478 29 6 -0.5099 -3.6236 -1.1991 30 6 0.1480 -2.4466 -0.9951 31 1 -0.4850 0.8401 -0.0004 32 1 2.6929 -3.6107 0.9635 33 1 1.4901 -5.7051 0.5912 34 1 -1.1668 -6.1584 -1.6759 35 1 -0.8577 -8.7657 -0.9566 36 1 -2.4245 -8.1365 -0.3932 37 1 0.6062 -9.9795 0.5461 38 1 0.7771 -11.3754 2.5661 39 1 -2.1884 -10.4281 5.8903 40 1 -2.8645 -12.0017 5.3767 41 1 -0.7089 -11.4260 7.4320 42 1 -1.9384 -12.7341 7.4126 43 1 0.7018 -13.1379 6.6247 44 1 -0.6669 -14.0732 5.9486 45 1 -2.9869 -9.8623 3.9186 46 1 -3.1444 -8.4643 1.8992 47 1 -1.4049 -3.6427 -1.8035 48 1 -0.2247 -1.5344 -1.4371 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015030498.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:12 Heat of formation + Delta-G solvation = -37.256148 kcal Electronic energy + Delta-G solvation = -30543.035674 eV Core-core repulsion = 26333.481411 eV Total energy + Delta-G solvation = -4209.554262 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 364.157 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.09006 -41.24572 -39.79385 -38.88910 -37.71131 -36.15342 -34.78660 -34.61868 -32.15139 -31.94678 -31.47652 -30.68874 -28.66652 -28.20277 -26.50638 -24.24523 -23.90434 -23.20227 -22.49367 -22.07621 -21.10593 -20.72647 -19.28124 -18.71671 -18.36507 -17.82161 -17.75652 -17.11138 -16.94767 -16.57974 -16.01949 -15.83656 -15.66023 -15.28976 -15.09735 -14.86566 -14.79901 -14.58872 -14.57055 -14.39995 -14.28782 -14.00522 -13.72647 -13.56039 -13.32191 -13.25779 -13.04855 -12.81371 -12.74500 -12.61556 -12.47647 -12.35796 -12.09955 -11.95790 -11.75769 -11.40144 -11.21075 -11.12525 -10.80293 -10.73696 -10.55936 -9.92432 -9.48279 -8.86435 -8.78491 -8.56186 -6.30304 0.18150 0.42893 0.80163 1.12221 1.38646 1.44952 1.47399 1.52035 1.79927 1.87897 2.22408 2.39573 2.77497 2.91430 3.25103 3.52436 3.69383 3.73621 3.89328 3.96070 4.03179 4.07641 4.14173 4.28786 4.39836 4.42444 4.49322 4.50359 4.58459 4.61797 4.70087 4.75628 4.81477 4.92382 5.03660 5.07053 5.11647 5.15228 5.15394 5.21266 5.28575 5.34233 5.44672 5.53787 5.64210 5.66084 5.89595 6.03056 6.04960 6.07929 6.11403 6.37618 6.65352 6.79579 6.93037 6.93687 6.99053 7.47974 8.37705 Molecular weight = 364.16amu Principal moments of inertia in cm(-1) A = 0.016355 B = 0.001687 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.562258 B =16597.810212 C =17302.279035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.031 3.969 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.498 4.498 8 H 0.071 0.929 9 C 0.070 3.930 10 C -0.229 4.229 11 C -0.094 4.094 12 C 0.020 3.980 13 N -0.646 5.646 14 C 0.497 3.503 15 O -0.572 6.572 16 C -0.084 4.084 17 C -0.098 4.098 18 C -0.090 4.090 19 C -0.181 4.181 20 C 0.147 3.853 21 N -0.563 5.563 22 C 0.083 3.917 23 C -0.118 4.118 24 C -0.144 4.144 25 C 0.494 3.506 26 O -0.563 6.563 27 C -0.153 4.153 28 C -0.084 4.084 29 C -0.116 4.116 30 C -0.162 4.162 31 H 0.287 0.713 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.419 0.581 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.131 0.869 43 H 0.113 0.887 44 H 0.129 0.871 45 H 0.154 0.846 46 H 0.146 0.854 47 H 0.128 0.872 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.668 -23.491 7.878 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.528 4.528 8 H 0.090 0.910 9 C 0.068 3.932 10 C -0.249 4.249 11 C -0.114 4.114 12 C -0.074 4.074 13 N -0.292 5.292 14 C 0.286 3.714 15 O -0.451 6.451 16 C -0.124 4.124 17 C -0.099 4.099 18 C -0.108 4.108 19 C -0.201 4.201 20 C 0.053 3.947 21 N -0.286 5.286 22 C -0.037 4.037 23 C -0.156 4.156 24 C -0.184 4.184 25 C 0.286 3.714 26 O -0.442 6.442 27 C -0.174 4.174 28 C -0.102 4.102 29 C -0.136 4.136 30 C -0.182 4.182 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.257 0.743 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.106 0.894 42 H 0.149 0.851 43 H 0.132 0.868 44 H 0.147 0.853 45 H 0.171 0.829 46 H 0.163 0.837 47 H 0.145 0.855 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.078 -23.363 8.282 27.150 hybrid contribution 0.681 0.933 -0.397 1.221 sum -10.397 -22.430 7.885 25.950 Atomic orbital electron populations 1.69855 1.08701 1.30334 1.37135 1.26741 0.95720 1.04354 0.91433 0.85132 0.78726 0.75779 0.79594 1.18298 1.19224 1.18722 1.19754 0.95808 0.91716 1.45486 0.91038 1.18004 0.92991 0.92743 0.89493 1.20819 1.03369 0.93944 1.06792 1.20352 0.94552 0.97006 0.99506 1.17253 0.95447 0.86248 1.08428 1.42983 1.52835 1.14893 1.18467 1.21448 0.79563 0.86960 0.83404 1.90718 1.47825 1.80881 1.25686 1.20661 1.04948 0.89264 0.97493 1.19483 0.95432 0.97700 0.97334 1.21029 0.97351 0.95273 0.97167 1.21511 1.00112 1.03123 0.95358 1.17963 0.95654 0.93832 0.87271 1.46118 1.28144 1.36042 1.18280 1.22658 0.92456 1.04052 0.84534 1.22686 0.98330 0.98623 0.95934 1.22408 1.03850 1.01328 0.90776 1.22177 0.79964 0.79098 0.90203 1.90612 1.34672 1.65875 1.53042 1.20974 0.97775 0.98692 0.99925 1.21121 0.98990 0.97350 0.92749 1.20535 0.99726 0.91107 1.02246 1.20968 0.98767 0.96849 1.01586 0.90198 0.89149 0.88360 0.74305 0.85374 0.84465 0.85542 0.85033 0.88830 0.87894 0.89382 0.85101 0.86835 0.85260 0.82885 0.83665 0.85461 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.30 10.82 21.82 0.24 -44.06 16 2 C 0.03 1.59 5.26 85.24 0.45 2.04 16 3 Si 0.99 39.28 29.57 68.60 2.03 41.31 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.50 -27.92 9.05 23.39 0.21 -27.71 16 8 H 0.07 3.91 7.86 -2.91 -0.02 3.88 16 9 C 0.07 3.97 5.55 -21.28 -0.12 3.85 16 10 C -0.23 -12.44 9.74 22.48 0.22 -12.22 16 11 C -0.09 -4.71 8.57 22.13 0.19 -4.52 16 12 C 0.02 0.88 6.29 38.57 0.24 1.12 16 13 N -0.65 -20.97 5.31 -303.11 -1.61 -22.58 16 14 C 0.50 16.25 7.55 87.66 0.66 16.91 16 15 O -0.57 -25.14 13.71 -3.04 -0.04 -25.18 16 16 C -0.08 -1.75 5.83 29.10 0.17 -1.58 16 17 C -0.10 -2.48 4.38 -19.84 -0.09 -2.56 16 18 C -0.09 -2.52 9.69 22.25 0.22 -2.30 16 19 C -0.18 -5.43 9.28 22.39 0.21 -5.23 16 20 C 0.15 3.73 6.60 38.15 0.25 3.98 16 21 N -0.56 -11.21 3.14 -627.71 -1.97 -13.18 16 22 C 0.08 0.74 6.27 86.83 0.54 1.29 16 23 C -0.12 -0.49 7.18 31.65 0.23 -0.27 16 24 C -0.14 -1.36 6.86 30.59 0.21 -1.15 16 25 C 0.49 10.81 7.92 87.90 0.70 11.51 16 26 O -0.56 -17.62 14.82 -3.06 -0.05 -17.66 16 27 C -0.15 -3.28 9.41 22.39 0.21 -3.07 16 28 C -0.08 -1.90 9.69 22.25 0.22 -1.69 16 29 C -0.12 -5.22 9.89 22.13 0.22 -5.01 16 30 C -0.16 -8.53 8.60 22.48 0.19 -8.34 16 31 H 0.29 13.76 8.30 -92.70 -0.77 12.99 16 32 H 0.09 4.78 8.06 -2.91 -0.02 4.76 16 33 H 0.10 4.94 6.41 -2.91 -0.02 4.92 16 34 H 0.42 9.56 8.81 -92.71 -0.82 8.74 16 35 H 0.13 1.98 8.08 -2.39 -0.02 1.96 16 36 H 0.14 1.84 8.08 -2.39 -0.02 1.82 16 37 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 38 H 0.13 4.44 5.27 -2.91 -0.02 4.42 16 39 H 0.09 0.76 7.70 -2.39 -0.02 0.74 16 40 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 41 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.13 -0.28 8.14 -2.39 -0.02 -0.30 16 43 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.15 2.21 7.01 -2.91 -0.02 2.19 16 46 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 47 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 48 H 0.11 6.12 6.22 -2.91 -0.02 6.10 16 Total: -1.00 -83.17 398.96 3.92 -79.25 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: 0.19 Total: 37.04 kcal Atomic # 6 Polarization: -40.06 SS G_CDS: 5.13 Total: -34.93 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -3.34 Total: -79.82 kcal Atomic # 8 Polarization: -42.76 SS G_CDS: -0.09 Total: -42.84 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -83.17 3.92 -79.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015030498.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.991 kcal (2) G-P(sol) polarization free energy of solvation -83.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds