Wall clock time and date at job start Tue Mar 31 2020 07:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31531 * 1 3 3 Si 1.86803 * 119.99686 * 2 1 4 4 H 1.48503 * 109.46814 * 240.00075 * 3 2 1 5 5 H 1.48500 * 109.47206 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47458 * 120.00089 * 3 2 1 7 7 C 1.38674 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99977 * 179.97438 * 7 2 1 9 9 O 1.34777 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.35520 * 117.00110 * 179.49552 * 9 7 2 11 11 C 1.38734 * 120.18098 * 4.39033 * 10 9 7 12 12 C 1.38086 * 120.10482 * 180.02562 * 11 10 9 13 13 C 1.38628 * 120.47280 * 0.02562 * 12 11 10 14 14 C 1.37745 * 120.35877 * 359.76558 * 13 12 11 15 15 C 1.39996 * 119.88211 * 0.47997 * 14 13 12 16 16 C 1.46704 * 120.23111 * 179.76855 * 15 14 13 17 17 C 1.35843 * 120.00135 * 18.86107 * 16 15 14 18 18 S 1.77412 * 127.73231 * 6.73639 * 17 16 15 19 19 C 1.77206 * 94.75005 * 180.02562 * 18 17 16 20 20 N 1.31425 * 126.64856 * 180.02562 * 19 18 17 21 21 C 1.36828 * 119.99726 * 180.02562 * 20 19 18 22 22 C 1.39690 * 120.15469 * 314.71446 * 21 20 19 23 23 C 1.37932 * 119.83743 * 179.72520 * 22 21 20 24 24 C 1.38372 * 120.15792 * 0.57993 * 23 22 21 25 25 C 1.38381 * 120.31399 * 359.69814 * 24 23 22 26 26 C 1.37925 * 120.15778 * 359.97438 * 25 24 23 27 27 N 1.36756 * 106.70171 * 359.97438 * 19 18 17 28 28 C 1.32248 * 118.73280 * 0.02562 * 27 19 18 29 29 O 1.21717 * 122.35637 * 180.02562 * 28 27 19 30 30 H 0.96999 * 120.00297 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.94802 * 0.02691 * 11 10 9 32 32 H 1.08004 * 119.76395 * 180.02562 * 12 11 10 33 33 H 1.08004 * 119.82022 * 180.02562 * 13 12 11 34 34 H 1.07997 * 120.06068 * 180.28085 * 14 13 12 35 35 H 1.08004 * 120.00010 * 198.86564 * 16 15 14 36 36 H 1.07996 * 120.07939 * 0.02562 * 22 21 20 37 37 H 1.08003 * 119.92036 * 180.32535 * 23 22 21 38 38 H 1.07997 * 119.84641 * 179.71873 * 24 23 22 39 39 H 1.07999 * 119.92018 * 180.02562 * 25 24 23 40 40 H 1.07996 * 120.07999 * 180.02562 * 26 25 24 41 41 H 0.97006 * 120.63338 * 180.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6966 1.2125 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3350 -2.3682 0.0005 10 6 2.0731 -3.5047 -0.0096 11 6 3.4565 -3.4386 0.0725 12 6 4.2071 -4.5976 0.0616 13 6 3.5887 -5.8348 -0.0317 14 6 2.2163 -5.9230 -0.1099 15 6 1.4410 -4.7574 -0.1052 16 6 -0.0209 -4.8422 -0.1932 17 6 -0.6526 -6.0080 0.1022 18 16 0.0596 -7.4906 0.7672 19 6 -1.4684 -8.3877 0.7948 20 7 -1.6446 -9.6246 1.2027 21 6 -2.8915 -10.1866 1.1640 22 6 -3.9992 -9.4688 1.6210 23 6 -5.2540 -10.0396 1.5737 24 6 -5.4153 -11.3245 1.0861 25 6 -4.3216 -12.0435 0.6370 26 6 -3.0619 -11.4829 0.6722 27 7 -2.4288 -7.5432 0.3105 28 6 -2.0757 -6.3230 -0.0572 29 8 -2.8758 -5.5178 -0.4964 30 1 -0.4850 0.8400 0.0004 31 1 3.9471 -2.4792 0.1451 32 1 5.2836 -4.5398 0.1262 33 1 4.1860 -6.7346 -0.0390 34 1 1.7394 -6.8896 -0.1778 35 1 -0.5949 -3.9778 -0.4930 36 1 -3.8742 -8.4676 2.0060 37 1 -6.1121 -9.4839 1.9219 38 1 -6.3994 -11.7682 1.0555 39 1 -4.4548 -13.0458 0.2573 40 1 -2.2092 -12.0451 0.3210 41 1 -3.3515 -7.8337 0.2381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015229896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:11 Heat of formation + Delta-G solvation = 46.737299 kcal Electronic energy + Delta-G solvation = -28097.372190 eV Core-core repulsion = 24035.235360 eV Total energy + Delta-G solvation = -4062.136830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.082 amu Computer time = 3.69 seconds Orbital eigenvalues (eV) -40.92298 -39.56798 -39.33817 -37.06782 -36.81537 -34.36437 -33.63309 -32.68503 -31.19193 -29.66598 -29.62454 -29.08534 -25.77594 -24.90805 -24.54443 -22.85343 -22.24528 -21.74597 -21.28044 -19.32304 -18.48567 -18.25120 -17.93667 -17.10563 -16.79088 -15.94387 -15.62284 -15.42716 -15.26853 -15.12023 -14.74614 -14.43698 -14.33194 -14.19541 -14.04851 -13.66267 -13.62533 -13.29323 -12.95763 -12.51619 -12.34652 -12.03692 -12.01100 -11.87885 -11.54205 -11.40325 -11.17807 -11.02739 -10.96436 -10.73181 -10.68734 -10.57142 -10.04287 -9.76581 -9.54658 -9.22536 -9.17696 -8.77702 -8.34951 -7.81935 -7.13701 -6.81772 -4.36484 0.30927 0.86070 0.97472 1.13430 1.82744 1.91953 2.08582 2.38116 2.88116 2.94920 2.96690 3.00267 3.15451 3.59872 3.67771 4.24809 4.28502 4.48243 4.71111 4.71753 4.74985 4.79091 4.89537 5.16531 5.25970 5.32845 5.34170 5.49246 5.53619 5.67198 5.80027 5.83474 5.92626 6.13869 6.20128 6.22250 6.23877 6.28222 6.30797 6.44698 6.64478 6.70401 6.77084 6.88288 7.00483 7.04951 7.41100 7.49318 7.60414 7.86823 8.60752 9.21586 10.33028 Molecular weight = 366.08amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.002228 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.270197 B =12563.101646 C =14073.985935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.044 3.956 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.394 4.394 8 H 0.101 0.899 9 O -0.148 6.148 10 C 0.181 3.819 11 C -0.230 4.230 12 C -0.044 4.044 13 C -0.212 4.212 14 C -0.038 4.038 15 C -0.194 4.194 16 C 0.137 3.863 17 C -0.320 4.320 18 S 0.123 5.877 19 C 0.354 3.646 20 N -0.497 5.497 21 C 0.110 3.890 22 C -0.177 4.177 23 C -0.097 4.097 24 C -0.138 4.138 25 C -0.101 4.101 26 C -0.112 4.112 27 N -0.683 5.683 28 C 0.562 3.438 29 O -0.498 6.498 30 H 0.279 0.721 31 H 0.135 0.865 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.158 0.842 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.522 -15.663 0.956 15.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.164 4.164 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.118 0.882 9 O -0.047 6.047 10 C 0.122 3.878 11 C -0.249 4.249 12 C -0.063 4.063 13 C -0.231 4.231 14 C -0.059 4.059 15 C -0.196 4.196 16 C 0.110 3.890 17 C -0.435 4.435 18 S 0.364 5.636 19 C -0.023 4.023 20 N -0.222 5.222 21 C 0.005 3.995 22 C -0.199 4.199 23 C -0.115 4.115 24 C -0.157 4.157 25 C -0.120 4.120 26 C -0.133 4.133 27 N -0.335 5.335 28 C 0.351 3.649 29 O -0.373 6.373 30 H 0.089 0.911 31 H 0.153 0.847 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.175 0.825 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.709 -15.869 1.396 15.946 hybrid contribution -1.975 1.295 -0.459 2.406 sum -2.684 -14.574 0.937 14.849 Atomic orbital electron populations 1.70001 1.06177 1.28962 1.41866 1.25447 0.95964 0.99319 0.95683 0.85671 0.78821 0.78892 0.79562 1.19078 1.19926 1.19085 1.21498 0.92258 0.80218 1.52861 0.88195 1.83847 1.34828 1.11704 1.74297 1.19381 0.90219 0.86620 0.91595 1.21187 0.93292 0.99523 1.10859 1.21035 0.99040 0.92106 0.94133 1.20564 0.93916 0.97381 1.11245 1.21116 0.93980 0.95593 0.95180 1.17906 0.91083 0.91436 1.19165 1.21917 0.92931 0.93290 0.80847 1.23186 0.95103 1.00794 1.24427 1.85656 0.99390 1.04162 1.74376 1.26037 0.95234 0.90586 0.90445 1.69696 1.20899 1.05717 1.25903 1.18816 0.87970 0.94973 0.97693 1.21832 0.93233 1.00468 1.04329 1.21032 0.96732 0.95432 0.98336 1.21175 0.98941 0.94885 1.00670 1.21077 0.92280 0.99754 0.98875 1.21036 0.97714 0.94050 1.00457 1.44125 1.13692 1.14204 1.61525 1.17614 0.89160 0.80871 0.77246 1.90921 1.54987 1.48104 1.43265 0.91093 0.84713 0.86599 0.86517 0.85605 0.82465 0.86116 0.85803 0.85944 0.85587 0.85254 0.74513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.27 13.67 55.48 0.76 -21.51 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.95 18.30 29.55 -169.99 -5.02 13.28 16 4 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 6 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 7 C -0.39 -9.62 9.48 30.89 0.29 -9.32 16 8 H 0.10 2.20 5.20 -52.49 -0.27 1.93 16 9 O -0.15 -3.65 9.03 0.90 0.01 -3.64 16 10 C 0.18 3.78 6.67 -38.49 -0.26 3.52 16 11 C -0.23 -4.21 9.15 -39.45 -0.36 -4.57 16 12 C -0.04 -0.68 10.03 -39.49 -0.40 -1.07 16 13 C -0.21 -3.12 10.02 -39.62 -0.40 -3.52 16 14 C -0.04 -0.60 8.67 -39.10 -0.34 -0.94 16 15 C -0.19 -3.63 5.83 -104.91 -0.61 -4.24 16 16 C 0.14 2.55 9.50 -37.02 -0.35 2.20 16 17 C -0.32 -5.46 6.35 -37.06 -0.24 -5.69 16 18 S 0.12 1.79 18.86 -107.50 -2.03 -0.24 16 19 C 0.35 5.18 8.05 -88.02 -0.71 4.48 16 20 N -0.50 -7.24 10.54 -10.52 -0.11 -7.35 16 21 C 0.11 1.45 6.02 -84.55 -0.51 0.94 16 22 C -0.18 -2.15 7.77 -39.15 -0.30 -2.45 16 23 C -0.10 -0.97 10.03 -39.64 -0.40 -1.37 16 24 C -0.14 -1.25 10.04 -39.48 -0.40 -1.65 16 25 C -0.10 -0.94 10.03 -39.64 -0.40 -1.34 16 26 C -0.11 -1.27 10.00 -39.15 -0.39 -1.66 16 27 N -0.68 -10.16 4.67 -13.48 -0.06 -10.23 16 28 C 0.56 9.81 7.98 -13.99 -0.11 9.70 16 29 O -0.50 -10.14 17.91 5.17 0.09 -10.04 16 30 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.14 2.41 5.64 -52.49 -0.30 2.12 16 32 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 34 H 0.13 1.83 4.35 -25.98 -0.11 1.72 16 35 H 0.16 3.20 7.79 -52.48 -0.41 2.79 16 36 H 0.12 1.48 6.92 -52.49 -0.36 1.12 16 37 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.41 5.64 6.16 -40.82 -0.25 5.39 16 LS Contribution 369.38 15.07 5.57 5.57 Total: -1.00 -28.28 369.38 -10.14 -38.43 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -3.38 Total: 11.76 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -5.97 Total: -16.02 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.58 Total: -39.09 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.10 Total: -13.69 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.02 Total: 13.28 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.03 Total: -0.24 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.28 -10.14 -38.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015229896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.164 kcal (2) G-P(sol) polarization free energy of solvation -28.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.69 seconds