Wall clock time and date at job start Tue Mar 31 2020 07:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31531 * 1 3 3 Si 1.86803 * 119.99686 * 2 1 4 4 H 1.48503 * 109.46814 * 240.00075 * 3 2 1 5 5 H 1.48500 * 109.47206 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47458 * 120.00089 * 3 2 1 7 7 C 1.38674 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99977 * 179.97438 * 7 2 1 9 9 O 1.34777 * 120.00145 * 0.02562 * 7 2 1 10 10 C 1.35520 * 117.00110 * 179.49552 * 9 7 2 11 11 C 1.38734 * 120.18098 * 4.39033 * 10 9 7 12 12 C 1.38086 * 120.10482 * 180.02562 * 11 10 9 13 13 C 1.38628 * 120.47280 * 0.02562 * 12 11 10 14 14 C 1.37745 * 120.35877 * 359.76558 * 13 12 11 15 15 C 1.39996 * 119.88211 * 0.47997 * 14 13 12 16 16 C 1.46704 * 120.23111 * 179.76855 * 15 14 13 17 17 C 1.35843 * 120.00135 * 18.86107 * 16 15 14 18 18 S 1.77412 * 127.73231 * 6.73639 * 17 16 15 19 19 C 1.77206 * 94.75005 * 180.02562 * 18 17 16 20 20 N 1.31425 * 126.64856 * 180.02562 * 19 18 17 21 21 C 1.36828 * 119.99726 * 180.02562 * 20 19 18 22 22 C 1.39690 * 120.15469 * 314.71446 * 21 20 19 23 23 C 1.37932 * 119.83743 * 179.72520 * 22 21 20 24 24 C 1.38372 * 120.15792 * 0.57993 * 23 22 21 25 25 C 1.38381 * 120.31399 * 359.69814 * 24 23 22 26 26 C 1.37925 * 120.15778 * 359.97438 * 25 24 23 27 27 N 1.36756 * 106.70171 * 359.97438 * 19 18 17 28 28 C 1.32248 * 118.73280 * 0.02562 * 27 19 18 29 29 O 1.21717 * 122.35637 * 180.02562 * 28 27 19 30 30 H 0.96999 * 120.00297 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.94802 * 0.02691 * 11 10 9 32 32 H 1.08004 * 119.76395 * 180.02562 * 12 11 10 33 33 H 1.08004 * 119.82022 * 180.02562 * 13 12 11 34 34 H 1.07997 * 120.06068 * 180.28085 * 14 13 12 35 35 H 1.08004 * 120.00010 * 198.86564 * 16 15 14 36 36 H 1.07996 * 120.07939 * 0.02562 * 22 21 20 37 37 H 1.08003 * 119.92036 * 180.32535 * 23 22 21 38 38 H 1.07997 * 119.84641 * 179.71873 * 24 23 22 39 39 H 1.07999 * 119.92018 * 180.02562 * 25 24 23 40 40 H 1.07996 * 120.07999 * 180.02562 * 26 25 24 41 41 H 0.97006 * 120.63338 * 180.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6965 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6966 1.2125 7 6 2.0088 -1.2009 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3350 -2.3682 0.0005 10 6 2.0731 -3.5047 -0.0096 11 6 3.4565 -3.4386 0.0725 12 6 4.2071 -4.5976 0.0616 13 6 3.5887 -5.8348 -0.0317 14 6 2.2163 -5.9230 -0.1099 15 6 1.4410 -4.7574 -0.1052 16 6 -0.0209 -4.8422 -0.1932 17 6 -0.6526 -6.0080 0.1022 18 16 0.0596 -7.4906 0.7672 19 6 -1.4684 -8.3877 0.7948 20 7 -1.6446 -9.6246 1.2027 21 6 -2.8915 -10.1866 1.1640 22 6 -3.9992 -9.4688 1.6210 23 6 -5.2540 -10.0396 1.5737 24 6 -5.4153 -11.3245 1.0861 25 6 -4.3216 -12.0435 0.6370 26 6 -3.0619 -11.4829 0.6722 27 7 -2.4288 -7.5432 0.3105 28 6 -2.0757 -6.3230 -0.0572 29 8 -2.8758 -5.5178 -0.4964 30 1 -0.4850 0.8400 0.0004 31 1 3.9471 -2.4792 0.1451 32 1 5.2836 -4.5398 0.1262 33 1 4.1860 -6.7346 -0.0390 34 1 1.7394 -6.8896 -0.1778 35 1 -0.5949 -3.9778 -0.4930 36 1 -3.8742 -8.4676 2.0060 37 1 -6.1121 -9.4839 1.9219 38 1 -6.3994 -11.7682 1.0555 39 1 -4.4548 -13.0458 0.2573 40 1 -2.2092 -12.0451 0.3210 41 1 -3.3515 -7.8337 0.2381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015229896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:07 Heat of formation + Delta-G solvation = 31.716112 kcal Electronic energy + Delta-G solvation = -28098.023557 eV Core-core repulsion = 24035.235360 eV Total energy + Delta-G solvation = -4062.788197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 366.082 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.22898 -41.01810 -40.40943 -38.45842 -38.14199 -35.63669 -34.97612 -34.38930 -32.02540 -31.02175 -30.68072 -30.46644 -27.47699 -26.30003 -25.64603 -23.90909 -23.50519 -22.83113 -22.61365 -20.65288 -19.99308 -19.63086 -19.14251 -18.62718 -17.73906 -17.25971 -16.86579 -16.77343 -16.64739 -16.25302 -16.11270 -15.84745 -15.63074 -15.59127 -15.31176 -14.88040 -14.53592 -14.46702 -14.36908 -13.79416 -13.63247 -13.57495 -13.35640 -12.92210 -12.82991 -12.64665 -12.43297 -12.34051 -12.21534 -12.14178 -11.99155 -11.84495 -11.49357 -11.18022 -10.86273 -10.79385 -10.05424 -10.02724 -9.52976 -9.17154 -8.55044 -8.43510 -6.20292 -1.00050 -0.32216 -0.22647 0.29717 0.53952 0.65834 0.69586 1.10499 1.36896 1.47473 1.52836 1.58651 1.74172 2.12907 2.72341 2.78033 2.91323 3.12026 3.25366 3.45773 3.83270 3.84824 3.91788 3.98703 4.18202 4.20360 4.32681 4.41306 4.43940 4.50311 4.58970 4.66369 4.77522 4.92396 4.97242 5.02090 5.07508 5.12246 5.25652 5.36934 5.40969 5.48861 5.53761 5.57157 5.65789 5.85374 5.91112 6.07769 6.22527 6.62609 6.88752 7.60929 8.65712 Molecular weight = 366.08amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.002228 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.270197 B =12563.101646 C =14073.985935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.016 4.016 3 Si 1.018 2.982 4 H -0.254 1.254 5 H -0.277 1.277 6 H -0.254 1.254 7 C -0.414 4.414 8 H 0.115 0.885 9 O -0.204 6.204 10 C 0.153 3.847 11 C -0.245 4.245 12 C -0.032 4.032 13 C -0.186 4.186 14 C -0.044 4.044 15 C -0.195 4.195 16 C 0.118 3.882 17 C -0.310 4.310 18 S 0.166 5.834 19 C 0.335 3.665 20 N -0.486 5.486 21 C 0.069 3.931 22 C -0.187 4.187 23 C -0.104 4.104 24 C -0.127 4.127 25 C -0.099 4.099 26 C -0.116 4.116 27 N -0.670 5.670 28 C 0.562 3.438 29 O -0.534 6.534 30 H 0.275 0.725 31 H 0.133 0.867 32 H 0.160 0.840 33 H 0.163 0.837 34 H 0.145 0.855 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.143 0.857 38 H 0.155 0.845 39 H 0.159 0.841 40 H 0.137 0.863 41 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.040 -20.188 1.316 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.216 4.216 3 Si 0.837 3.163 4 H -0.178 1.178 5 H -0.202 1.202 6 H -0.178 1.178 7 C -0.490 4.490 8 H 0.132 0.868 9 O -0.108 6.108 10 C 0.099 3.901 11 C -0.264 4.264 12 C -0.050 4.050 13 C -0.205 4.205 14 C -0.065 4.065 15 C -0.197 4.197 16 C 0.090 3.910 17 C -0.425 4.425 18 S 0.408 5.592 19 C -0.042 4.042 20 N -0.210 5.210 21 C -0.034 4.034 22 C -0.208 4.208 23 C -0.122 4.122 24 C -0.145 4.145 25 C -0.117 4.117 26 C -0.136 4.136 27 N -0.323 5.323 28 C 0.351 3.649 29 O -0.411 6.411 30 H 0.084 0.916 31 H 0.151 0.849 32 H 0.178 0.822 33 H 0.181 0.819 34 H 0.162 0.838 35 H 0.144 0.856 36 H 0.129 0.871 37 H 0.161 0.839 38 H 0.172 0.828 39 H 0.176 0.824 40 H 0.155 0.845 41 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 0.804 -20.527 1.777 20.619 hybrid contribution -2.540 1.935 -0.517 3.234 sum -1.736 -18.592 1.260 18.715 Atomic orbital electron populations 1.70163 1.08180 1.29352 1.46719 1.26628 0.96726 1.02916 0.95334 0.84645 0.77423 0.74027 0.80217 1.17843 1.20201 1.17789 1.21942 0.93017 0.80750 1.53245 0.86826 1.83855 1.36021 1.12570 1.78334 1.19985 0.91701 0.86581 0.91828 1.21380 0.92370 1.01091 1.11576 1.21526 1.01059 0.90887 0.91554 1.21171 0.93413 0.98910 1.06993 1.21392 0.94841 0.95147 0.95104 1.18189 0.91132 0.91928 1.18478 1.21684 0.93387 0.93134 0.82763 1.23316 0.95465 1.01608 1.22128 1.85312 0.98701 1.01331 1.73903 1.26087 0.95113 0.91066 0.91974 1.69698 1.22292 1.05170 1.23790 1.19055 0.87699 0.96195 1.00481 1.21857 0.94021 1.00178 1.04751 1.21345 0.96466 0.96277 0.98134 1.21630 1.00440 0.94121 0.98323 1.21482 0.91319 1.01062 0.97830 1.21272 0.99137 0.93170 1.00048 1.43907 1.14258 1.13281 1.60867 1.17733 0.89071 0.81303 0.76796 1.90903 1.55854 1.49363 1.44975 0.91550 0.84920 0.82240 0.81913 0.83837 0.85639 0.87121 0.83878 0.82759 0.82377 0.84512 0.73767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.91 13.67 21.62 0.30 -52.62 16 2 C -0.02 -0.85 5.49 84.84 0.47 -0.39 16 3 Si 1.02 39.63 29.55 68.60 2.03 41.66 16 4 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 5 H -0.28 -10.67 7.11 99.48 0.71 -9.97 16 6 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 7 C -0.41 -21.78 9.48 67.92 0.64 -21.14 16 8 H 0.11 5.29 5.20 -2.91 -0.02 5.27 16 9 O -0.20 -11.05 9.03 -19.68 -0.18 -11.23 16 10 C 0.15 6.74 6.67 22.97 0.15 6.89 16 11 C -0.25 -8.93 9.15 22.35 0.20 -8.73 16 12 C -0.03 -0.86 10.03 22.33 0.22 -0.64 16 13 C -0.19 -4.64 10.02 22.25 0.22 -4.42 16 14 C -0.04 -1.31 8.67 22.58 0.20 -1.12 16 15 C -0.20 -7.52 5.83 -20.05 -0.12 -7.63 16 16 C 0.12 4.72 9.50 23.93 0.23 4.94 16 17 C -0.31 -10.90 6.35 23.90 0.15 -10.75 16 18 S 0.17 4.60 18.86 -56.49 -1.07 3.54 16 19 C 0.34 9.50 8.05 179.44 1.44 10.94 16 20 N -0.49 -13.44 10.54 -187.20 -1.97 -15.41 16 21 C 0.07 1.71 6.02 39.07 0.24 1.95 16 22 C -0.19 -4.30 7.77 22.55 0.18 -4.12 16 23 C -0.10 -1.83 10.03 22.23 0.22 -1.60 16 24 C -0.13 -1.80 10.04 22.34 0.22 -1.57 16 25 C -0.10 -1.45 10.03 22.23 0.22 -1.23 16 26 C -0.12 -2.33 10.00 22.55 0.23 -2.10 16 27 N -0.67 -20.02 4.67 -316.15 -1.48 -21.50 16 28 C 0.56 20.34 7.98 86.82 0.69 21.03 16 29 O -0.53 -23.02 17.91 -4.40 -0.08 -23.10 16 30 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.13 4.81 5.64 -2.91 -0.02 4.80 16 32 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 33 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 34 H 0.15 3.75 4.35 -19.76 -0.09 3.67 16 35 H 0.13 5.81 7.79 -2.91 -0.02 5.79 16 36 H 0.11 2.70 6.92 -2.91 -0.02 2.68 16 37 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 38 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 39 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 40 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 41 H 0.42 11.49 6.16 -92.70 -0.57 10.92 16 Total: -1.00 -69.46 369.38 3.84 -65.62 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: 0.48 Total: 32.71 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 5.82 Total: -19.67 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -3.15 Total: -89.53 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.26 Total: -34.33 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.07 Total: 3.54 kcal Total: -69.46 3.84 -65.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015229896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.333 kcal (2) G-P(sol) polarization free energy of solvation -69.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds