Wall clock time and date at job start Tue Mar 31 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38282 * 119.96475 * 2 1 4 4 C 1.38282 * 120.13971 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.96374 * 179.97438 * 4 3 2 6 6 C 1.38116 * 120.07450 * 359.96310 * 4 3 2 7 7 C 1.38874 * 119.92427 * 0.02562 * 6 4 3 8 8 N 1.39924 * 120.06641 * 179.73041 * 7 6 4 9 9 C 1.46492 * 120.00669 * 63.71604 * 8 7 6 10 10 C 1.50700 * 109.47247 * 90.00095 * 9 8 7 11 11 H 1.08002 * 119.99846 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00036 * 180.02562 * 10 9 8 13 13 N 1.31506 * 120.00185 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99665 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47208 * 59.99603 * 14 12 10 16 16 H 1.48503 * 109.47143 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47094 * 299.99701 * 14 12 10 18 18 C 1.34778 * 119.99441 * 243.72185 * 8 7 6 19 19 O 1.21283 * 120.00282 * 5.00265 * 18 8 7 20 20 C 1.50707 * 119.99762 * 185.01040 * 18 8 7 21 21 N 1.46899 * 109.46898 * 185.89729 * 20 18 8 22 22 C 1.47905 * 111.00389 * 76.71872 * 21 20 18 23 23 C 1.54598 * 102.63089 * 94.65829 * 22 21 20 24 24 C 1.51574 * 102.81623 * 25.60742 * 23 22 21 25 25 C 1.37920 * 131.56895 * 163.76676 * 24 23 22 26 26 C 1.38311 * 120.07898 * 180.28690 * 25 24 23 27 27 C 1.38302 * 119.88067 * 0.03330 * 26 25 24 28 28 C 1.37902 * 120.26700 * 359.85255 * 27 26 25 29 29 C 1.38966 * 107.94765 * 343.81153 * 24 23 22 30 30 C 1.38117 * 119.96636 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.46797 * 89.99751 * 1 2 3 32 32 H 1.09006 * 109.46701 * 209.99474 * 1 2 3 33 33 H 1.08991 * 109.46812 * 329.99690 * 1 2 3 34 34 H 1.07999 * 119.93209 * 0.02562 * 3 2 1 35 35 H 1.09008 * 109.47643 * 269.98347 * 5 4 3 36 36 H 1.09004 * 109.47288 * 29.98003 * 5 4 3 37 37 H 1.09001 * 109.47641 * 149.98005 * 5 4 3 38 38 H 1.07996 * 120.03783 * 179.97438 * 6 4 3 39 39 H 1.09000 * 109.47759 * 210.00557 * 9 8 7 40 40 H 1.09004 * 109.47036 * 330.00052 * 9 8 7 41 41 H 0.96999 * 120.00382 * 180.02562 * 13 12 10 42 42 H 1.09004 * 109.46470 * 305.88967 * 20 18 8 43 43 H 1.08991 * 109.47387 * 65.89187 * 20 18 8 44 44 H 1.09004 * 110.78072 * 212.94922 * 22 21 20 45 45 H 1.09006 * 110.77491 * 336.18201 * 22 21 20 46 46 H 1.09002 * 110.74466 * 143.94332 * 23 22 21 47 47 H 1.09000 * 110.74279 * 267.27641 * 23 22 21 48 48 H 1.07993 * 119.96320 * 0.29700 * 25 24 23 49 49 H 1.07998 * 120.05402 * 179.97438 * 26 25 24 50 50 H 1.08003 * 119.86470 * 179.87265 * 27 26 25 51 51 H 1.08003 * 119.90256 * 180.02562 * 28 27 26 52 52 H 1.08005 * 120.03485 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1980 0.0000 4 6 3.5805 1.2022 -0.0005 5 6 4.3292 2.5101 -0.0011 6 6 4.2763 0.0091 -0.0003 7 6 3.5856 -1.1957 -0.0001 8 7 4.2874 -2.4061 -0.0055 9 6 5.1455 -2.7606 1.1276 10 6 4.3403 -3.5225 2.1485 11 1 3.2941 -3.7230 1.9707 12 6 4.9393 -3.9636 3.3094 13 7 6.2133 -3.7198 3.5257 14 14 3.9413 -4.9086 4.5745 15 1 3.4028 -6.1466 3.9558 16 1 4.8111 -5.2678 5.7233 17 1 2.8167 -4.0632 5.0498 18 6 4.1741 -3.2460 -1.0535 19 8 3.5371 -2.9139 -2.0307 20 6 4.8387 -4.5980 -1.0110 21 7 4.6876 -5.2590 -2.3141 22 6 5.6255 -4.6928 -3.3077 23 6 6.8304 -5.6578 -3.2234 24 6 6.1982 -6.9423 -2.7257 25 6 6.6555 -8.2435 -2.7162 26 6 5.8638 -9.2527 -2.1987 27 6 4.6121 -8.9550 -1.6913 28 6 4.1513 -7.6553 -1.6964 29 6 4.9444 -6.6320 -2.2131 30 6 2.1969 -1.1965 0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3632 0.8899 0.5138 34 1 1.6560 2.1323 0.0004 35 1 4.5096 2.8251 -1.0290 36 1 3.7373 3.2678 0.5125 37 1 5.2821 2.3835 0.5127 38 1 5.3562 0.0131 -0.0011 39 1 5.9705 -3.3815 0.7785 40 1 5.5415 -1.8521 1.5816 41 1 6.6348 -4.0304 4.3422 42 1 5.8983 -4.4749 -0.7867 43 1 4.3720 -5.2081 -0.2377 44 1 5.1871 -4.7077 -4.3056 45 1 5.9174 -3.6798 -3.0304 46 1 7.2779 -5.8034 -4.2066 47 1 7.5701 -5.2905 -2.5120 48 1 7.6329 -8.4746 -3.1130 49 1 6.2221 -10.2715 -2.1919 50 1 3.9933 -9.7435 -1.2893 51 1 3.1730 -7.4293 -1.2983 52 1 1.6569 -2.1319 0.0005 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015259452.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:45 Heat of formation + Delta-G solvation = 18.708816 kcal Electronic energy + Delta-G solvation = -32925.548469 eV Core-core repulsion = 28854.254124 eV Total energy + Delta-G solvation = -4071.294345 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 364.189 amu Computer time = 4.77 seconds Orbital eigenvalues (eV) -42.08373 -41.21938 -39.68650 -37.64101 -36.87184 -34.74797 -34.41961 -33.49697 -32.18127 -30.86198 -29.87496 -29.18062 -28.22730 -27.63329 -27.58990 -25.00243 -24.08627 -23.55188 -22.18343 -21.86562 -21.61018 -19.97818 -18.73051 -18.32851 -17.75233 -17.52366 -17.16976 -16.96253 -16.74898 -16.42852 -16.22232 -15.94696 -15.62348 -14.96974 -14.84779 -14.58608 -14.52481 -14.37960 -14.30867 -14.00672 -13.92563 -13.88824 -13.64702 -13.51242 -13.32644 -13.31386 -13.15492 -13.01768 -12.80886 -12.70496 -12.49290 -12.43972 -12.42142 -12.20268 -12.12077 -12.01137 -11.81141 -11.80084 -11.09270 -10.69776 -10.35298 -10.14834 -9.74471 -9.48662 -9.17607 -8.89776 -8.27375 -6.42574 0.32181 0.37051 0.43162 0.44342 1.37158 1.37547 1.45216 1.57951 1.97513 2.34819 2.65916 2.77157 2.83462 3.02803 3.52746 3.70271 3.74910 3.90671 3.91181 3.92789 4.09994 4.10924 4.16938 4.25507 4.28108 4.32962 4.44684 4.46059 4.51558 4.51656 4.65497 4.68290 4.68666 4.78046 4.80545 4.86623 4.87073 4.90761 4.95148 4.99059 5.04707 5.11830 5.13586 5.33747 5.38015 5.45714 5.49375 5.53506 5.57960 5.61689 5.67340 5.76402 5.80969 5.84863 5.94940 6.17475 6.27426 6.39047 6.67824 7.19218 7.30875 8.78080 Molecular weight = 364.19amu Principal moments of inertia in cm(-1) A = 0.007761 B = 0.003548 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3607.127938 B = 7888.915279 C = 9781.853285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.078 4.078 3 C -0.131 4.131 4 C -0.075 4.075 5 C -0.106 4.106 6 C -0.153 4.153 7 C 0.149 3.851 8 N -0.562 5.562 9 C 0.258 3.742 10 C -0.549 4.549 11 H 0.048 0.952 12 C 0.028 3.972 13 N -0.915 5.915 14 Si 0.953 3.047 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.274 1.274 18 C 0.520 3.480 19 O -0.558 6.558 20 C 0.067 3.933 21 N -0.492 5.492 22 C 0.056 3.944 23 C -0.102 4.102 24 C -0.149 4.149 25 C -0.093 4.093 26 C -0.129 4.129 27 C -0.107 4.107 28 C -0.131 4.131 29 C 0.064 3.936 30 C -0.141 4.141 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.157 0.843 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.117 0.883 39 H 0.033 0.967 40 H 0.022 0.978 41 H 0.270 0.730 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.070 0.930 46 H 0.113 0.887 47 H 0.082 0.918 48 H 0.147 0.853 49 H 0.157 0.843 50 H 0.150 0.850 51 H 0.114 0.886 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 -0.036 -10.013 10.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.079 4.079 3 C -0.149 4.149 4 C -0.075 4.075 5 C -0.162 4.162 6 C -0.172 4.172 7 C 0.058 3.942 8 N -0.290 5.290 9 C 0.138 3.862 10 C -0.587 4.587 11 H 0.067 0.933 12 C -0.173 4.173 13 N -0.554 5.554 14 Si 0.777 3.223 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.199 1.199 18 C 0.309 3.691 19 O -0.436 6.436 20 C -0.062 4.062 21 N -0.210 5.210 22 C -0.070 4.070 23 C -0.140 4.140 24 C -0.151 4.151 25 C -0.112 4.112 26 C -0.148 4.148 27 C -0.125 4.125 28 C -0.151 4.151 29 C -0.032 4.032 30 C -0.161 4.161 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.175 0.825 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.135 0.865 39 H 0.050 0.950 40 H 0.040 0.960 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.089 0.911 46 H 0.132 0.868 47 H 0.100 0.900 48 H 0.165 0.835 49 H 0.175 0.825 50 H 0.167 0.833 51 H 0.132 0.868 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.606 0.240 -10.534 10.658 hybrid contribution 0.379 -0.784 1.358 1.614 sum -1.227 -0.545 -9.176 9.273 Atomic orbital electron populations 1.20801 0.88814 1.03597 1.03094 1.20122 0.97727 0.92013 0.98043 1.21202 0.93271 0.98077 1.02382 1.20131 0.94435 0.95244 0.97709 1.20810 0.99834 0.92274 1.03314 1.21145 0.99865 0.91628 1.04605 1.17884 0.91230 0.85801 0.99241 1.45887 1.46020 1.17128 1.19956 1.19180 0.88985 0.95664 0.82378 1.21509 0.96514 1.36570 1.04106 0.93333 1.25588 0.95848 0.96482 0.99425 1.69978 1.11527 1.46477 1.27410 0.85687 0.78745 0.79205 0.78630 1.19447 1.20072 1.19925 1.20683 0.80648 0.86084 0.81647 1.90604 1.43010 1.76778 1.33237 1.21809 1.00230 0.92676 0.91453 1.59671 1.53176 1.01099 1.07029 1.23128 0.90051 0.97625 0.96224 1.21702 0.97770 0.91093 1.03437 1.21271 0.94334 0.96397 1.03113 1.20752 1.00824 0.90344 0.99233 1.21459 0.94145 1.00404 0.98746 1.21237 0.97094 0.95220 0.98968 1.20748 0.99718 0.92424 1.02167 1.19783 0.94441 0.88962 1.00017 1.21049 0.93025 0.98342 1.03648 0.90213 0.92181 0.88988 0.82521 0.89873 0.89319 0.91592 0.86518 0.94953 0.96037 0.92087 0.91122 0.88456 0.88822 0.91100 0.86850 0.89976 0.83509 0.82526 0.83262 0.86797 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.59 10.01 71.24 0.71 -1.88 16 2 C -0.08 -2.56 5.88 -19.88 -0.12 -2.68 16 3 C -0.13 -3.74 9.35 22.29 0.21 -3.53 16 4 C -0.07 -2.29 5.88 -19.88 -0.12 -2.40 16 5 C -0.11 -2.28 10.01 71.24 0.71 -1.57 16 6 C -0.15 -5.87 9.17 22.39 0.21 -5.66 16 7 C 0.15 6.55 4.91 38.15 0.19 6.74 16 8 N -0.56 -26.12 2.52 -635.32 -1.60 -27.72 16 9 C 0.26 12.96 4.86 85.63 0.42 13.37 16 10 C -0.55 -29.65 9.39 25.60 0.24 -29.40 16 11 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 12 C 0.03 1.48 5.46 84.66 0.46 1.95 16 13 N -0.92 -50.80 13.29 21.45 0.28 -50.51 16 14 Si 0.95 42.60 29.54 68.60 2.03 44.63 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 C 0.52 23.66 6.98 87.66 0.61 24.27 16 19 O -0.56 -27.20 15.66 -3.04 -0.05 -27.24 16 20 C 0.07 2.75 4.09 85.56 0.35 3.10 16 21 N -0.49 -18.25 4.58 -692.95 -3.17 -21.42 16 22 C 0.06 1.75 6.39 86.65 0.55 2.31 16 23 C -0.10 -2.58 6.93 30.67 0.21 -2.37 16 24 C -0.15 -4.19 6.23 -19.49 -0.12 -4.32 16 25 C -0.09 -2.13 10.03 22.21 0.22 -1.91 16 26 C -0.13 -2.72 10.06 22.30 0.22 -2.50 16 27 C -0.11 -2.58 10.02 22.21 0.22 -2.36 16 28 C -0.13 -4.06 10.04 22.47 0.23 -3.83 16 29 C 0.06 2.14 5.49 38.28 0.21 2.35 16 30 C -0.14 -5.83 8.97 22.39 0.20 -5.63 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.51 8.08 -2.38 -0.02 1.49 16 33 H 0.09 1.71 8.08 -2.39 -0.02 1.69 16 34 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 37 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 38 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 39 H 0.03 1.66 6.32 -2.39 -0.02 1.64 16 40 H 0.02 1.15 7.74 -2.39 -0.02 1.13 16 41 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 42 H 0.07 2.87 6.73 -2.38 -0.02 2.86 16 43 H 0.10 4.31 7.94 -2.39 -0.02 4.29 16 44 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 45 H 0.07 2.33 7.37 -2.38 -0.02 2.31 16 46 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 49 H 0.16 2.19 8.06 -2.91 -0.02 2.17 16 50 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 51 H 0.11 3.61 8.06 -2.91 -0.02 3.58 16 52 H 0.10 4.24 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -68.89 428.71 4.22 -64.67 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.90 Total: 33.55 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 5.83 Total: -15.96 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -4.49 Total: -99.65 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.05 Total: -27.24 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -68.89 4.22 -64.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015259452.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.381 kcal (2) G-P(sol) polarization free energy of solvation -68.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.77 seconds