Wall clock time and date at job start Tue Mar 31 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30578 * 122.98843 * 2 1 4 4 C 1.30312 * 117.32806 * 180.28668 * 3 2 1 5 5 C 1.47857 * 124.74452 * 179.72393 * 4 3 2 6 6 C 1.39502 * 119.74101 * 179.70353 * 5 4 3 7 7 C 1.38418 * 119.04652 * 179.75775 * 6 5 4 8 8 C 1.38765 * 118.52210 * 0.50849 * 7 6 5 9 9 C 1.38371 * 119.38819 * 359.73119 * 8 7 6 10 10 N 1.31659 * 120.91772 * 0.02562 * 9 8 7 11 11 S 1.70924 * 110.50873 * 359.72849 * 4 3 2 12 12 C 1.36978 * 122.99301 * 179.78143 * 2 1 3 13 13 C 1.46633 * 126.13051 * 0.02562 * 12 2 1 14 14 O 1.21702 * 119.99622 * 359.70954 * 13 12 2 15 15 N 1.34776 * 120.00093 * 179.71158 * 13 12 2 16 16 C 1.39088 * 119.99749 * 184.28053 * 15 13 12 17 17 C 1.39524 * 119.83522 * 144.68585 * 16 15 13 18 18 C 1.36346 * 120.16617 * 180.27600 * 17 16 15 19 19 C 1.40892 * 119.83207 * 359.45594 * 18 17 16 20 20 C 1.41128 * 120.16116 * 180.27524 * 19 18 17 21 21 H 1.07997 * 119.99362 * 215.03621 * 20 19 18 22 22 C 1.39900 * 119.99972 * 35.03567 * 20 19 18 23 23 N 1.30874 * 120.00501 * 355.54664 * 22 20 19 24 24 Si 1.86800 * 119.99723 * 175.54896 * 22 20 19 25 25 H 1.48500 * 109.47238 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47374 * 120.00062 * 24 22 20 27 27 H 1.48506 * 109.46906 * 240.00051 * 24 22 20 28 28 C 1.40883 * 119.67272 * 0.56278 * 19 18 17 29 29 C 1.36354 * 119.83623 * 359.70992 * 28 19 18 30 30 H 1.09004 * 109.47118 * 270.21300 * 1 2 3 31 31 H 1.09000 * 109.47326 * 30.21929 * 1 2 3 32 32 H 1.09010 * 109.47007 * 150.22042 * 1 2 3 33 33 H 1.07998 * 120.47813 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.73913 * 180.26318 * 7 6 5 35 35 H 1.08000 * 120.30249 * 179.71147 * 8 7 6 36 36 H 1.08006 * 119.54107 * 180.02562 * 9 8 7 37 37 H 0.96994 * 120.00115 * 4.28947 * 15 13 12 38 38 H 1.08002 * 119.91580 * 359.97438 * 17 16 15 39 39 H 1.08000 * 120.08474 * 179.72770 * 18 17 16 40 40 H 0.96998 * 120.00322 * 180.02562 * 23 22 20 41 41 H 1.08007 * 120.07707 * 179.68840 * 28 19 18 42 42 H 1.07997 * 119.91582 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2179 1.0953 0.0000 4 6 3.5147 0.9667 -0.0058 5 6 4.4730 2.0927 -0.0126 6 6 5.8440 1.8345 -0.0122 7 6 6.7283 2.8993 -0.0237 8 6 6.2137 4.1881 -0.0245 9 6 4.8422 4.3716 -0.0194 10 7 4.0219 3.3418 -0.0134 11 16 3.9527 -0.6854 -0.0045 12 6 2.2528 -1.1489 0.0044 13 6 1.7303 -2.5189 0.0091 14 8 0.5287 -2.7118 0.0147 15 7 2.5807 -3.5645 0.0073 16 6 2.0872 -4.8621 -0.0782 17 6 2.8002 -5.8308 -0.7853 18 6 2.3199 -7.1034 -0.8781 19 6 1.1060 -7.4421 -0.2482 20 6 0.6054 -8.7588 -0.3349 21 1 -0.4597 -8.9288 -0.3909 22 6 1.4887 -9.8436 -0.3483 23 7 2.7806 -9.6354 -0.3685 24 14 0.8241 -11.5893 -0.3375 25 1 -0.6603 -11.5538 -0.3139 26 1 1.2833 -12.3014 -1.5571 27 1 1.3210 -12.3007 0.8676 28 6 0.3915 -6.4585 0.4636 29 6 0.8814 -5.1885 0.5432 30 1 -0.3633 0.0038 1.0277 31 1 -0.3634 0.8880 -0.5172 32 1 -0.3633 -0.8920 -0.5105 33 1 6.2101 0.8185 -0.0074 34 1 7.7951 2.7309 -0.0280 35 1 6.8776 5.0399 -0.0287 36 1 4.4390 5.3736 -0.0204 37 1 3.5368 -3.4122 0.0657 38 1 3.7326 -5.5706 -1.2644 39 1 2.8707 -7.8511 -1.4295 40 1 3.3930 -10.3875 -0.3782 41 1 -0.5423 -6.7097 0.9448 42 1 0.3345 -4.4334 1.0882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000015818210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:14 Heat of formation + Delta-G solvation = 73.109091 kcal Electronic energy + Delta-G solvation = -27587.507763 eV Core-core repulsion = 23624.233162 eV Total energy + Delta-G solvation = -3963.274601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.094 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.76797 -40.18782 -39.21772 -37.25337 -34.58743 -33.37027 -33.02765 -32.84223 -30.83905 -29.72923 -29.34860 -28.01109 -26.09622 -24.99461 -24.06748 -22.62475 -22.24206 -21.24757 -20.32337 -19.25831 -18.60234 -17.40196 -17.37283 -17.00439 -16.34638 -15.97981 -15.94869 -15.61588 -15.18099 -14.69420 -14.64498 -14.05266 -13.89902 -13.86796 -13.80372 -13.52607 -13.04501 -12.73728 -12.66539 -12.55123 -12.32006 -12.15937 -11.80976 -11.50598 -11.43282 -11.21518 -10.96344 -10.58998 -10.46518 -10.19519 -10.07421 -10.03095 -9.93439 -9.88892 -9.60334 -9.40652 -9.22788 -8.86420 -8.63844 -7.61002 -6.95041 -6.67867 -4.38943 -0.40391 0.72189 0.82988 0.88469 1.30555 2.33789 2.63845 3.04239 3.05852 3.08545 3.13561 3.31390 3.39924 3.45889 3.59011 3.94434 3.97184 4.34195 4.45040 4.53454 4.59441 4.64233 4.84772 4.94602 5.06908 5.15203 5.45241 5.60161 5.61998 5.68145 5.74020 5.85383 6.09515 6.13265 6.30236 6.40044 6.64583 6.83140 7.00615 7.12895 7.22717 7.34919 7.56116 7.58681 7.64999 7.77519 8.01042 8.14075 8.25234 8.50385 8.61396 8.87490 8.93290 10.23477 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.024250 B = 0.001801 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.363314 B =15546.124996 C =16608.500269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.143 3.857 3 N -0.435 5.435 4 C 0.075 3.925 5 C 0.191 3.809 6 C -0.152 4.152 7 C -0.069 4.069 8 C -0.163 4.163 9 C 0.106 3.894 10 N -0.444 5.444 11 S 0.197 5.803 12 C -0.279 4.279 13 C 0.579 3.421 14 O -0.509 6.509 15 N -0.640 5.640 16 C -0.002 4.002 17 C -0.116 4.116 18 C -0.141 4.141 19 C 0.102 3.898 20 C -0.458 4.458 21 H 0.077 0.923 22 C 0.069 3.931 23 N -0.811 5.811 24 Si 0.916 3.084 25 H -0.262 1.262 26 H -0.274 1.274 27 H -0.274 1.274 28 C -0.205 4.205 29 C -0.082 4.082 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.163 0.837 37 H 0.392 0.608 38 H 0.091 0.909 39 H 0.133 0.867 40 H 0.278 0.722 41 H 0.098 0.902 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.691 22.279 0.541 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.003 3.997 3 N -0.150 5.150 4 C -0.197 4.197 5 C 0.052 3.948 6 C -0.174 4.174 7 C -0.095 4.095 8 C -0.184 4.184 9 C -0.054 4.054 10 N -0.153 5.153 11 S 0.455 5.545 12 C -0.404 4.404 13 C 0.365 3.635 14 O -0.387 6.387 15 N -0.282 5.282 16 C -0.094 4.094 17 C -0.137 4.137 18 C -0.161 4.161 19 C 0.099 3.901 20 C -0.489 4.489 21 H 0.096 0.904 22 C -0.146 4.146 23 N -0.438 5.438 24 Si 0.741 3.259 25 H -0.185 1.185 26 H -0.200 1.200 27 H -0.200 1.200 28 C -0.225 4.225 29 C -0.101 4.101 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.122 0.878 33 H 0.157 0.843 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.181 0.819 37 H 0.226 0.774 38 H 0.110 0.890 39 H 0.150 0.850 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.922 22.120 0.531 24.249 hybrid contribution 0.552 -0.727 0.120 0.920 sum 10.474 21.393 0.651 23.828 Atomic orbital electron populations 1.20667 0.85431 1.04684 1.03865 1.21021 0.98829 0.84362 0.95483 1.66212 1.03439 1.31015 1.14300 1.24756 0.93120 0.96094 1.05740 1.18576 0.88790 0.89429 0.97988 1.22045 0.92613 1.01091 1.01647 1.21528 1.00572 0.92010 0.95355 1.22369 0.97150 0.98233 1.00695 1.22910 0.89869 0.97913 0.94671 1.67704 1.39760 0.98138 1.09741 1.83538 1.05880 0.99993 1.65079 1.26233 0.95482 0.99733 1.18986 1.16614 0.86550 0.81912 0.78435 1.90783 1.14064 1.84069 1.49786 1.42836 1.08733 1.05206 1.71416 1.17212 0.99742 0.82311 1.10107 1.20319 0.99096 0.94244 0.99994 1.21191 0.98959 0.94010 1.01926 1.17763 0.91551 0.92523 0.88222 1.19560 0.94558 0.90423 1.44353 0.90434 1.25894 0.94603 1.01609 0.92462 1.69767 1.02722 1.33290 1.38027 0.86137 0.80212 0.81173 0.78417 1.18523 1.19959 1.19966 1.20823 1.02342 0.93704 1.05618 1.20412 0.95042 0.96173 0.98520 0.89986 0.90702 0.87811 0.84305 0.83847 0.84110 0.81944 0.77398 0.89038 0.84983 0.91141 0.88428 0.87274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.71 36.00 0.35 -0.84 16 2 C 0.14 2.14 6.83 -83.58 -0.57 1.57 16 3 N -0.44 -6.51 10.43 -8.19 -0.09 -6.59 16 4 C 0.08 0.97 7.20 -14.26 -0.10 0.87 16 5 C 0.19 2.14 6.75 -83.04 -0.56 1.58 16 6 C -0.15 -1.19 9.60 -39.04 -0.37 -1.56 16 7 C -0.07 -0.39 10.16 -39.32 -0.40 -0.79 16 8 C -0.16 -0.88 10.11 -39.34 -0.40 -1.27 16 9 C 0.11 0.80 11.18 -17.58 -0.20 0.61 16 10 N -0.44 -5.15 10.24 -9.84 -0.10 -5.25 16 11 S 0.20 2.20 21.10 -107.50 -2.27 -0.07 16 12 C -0.28 -4.18 6.52 -36.65 -0.24 -4.42 16 13 C 0.58 10.37 7.61 -12.87 -0.10 10.27 16 14 O -0.51 -10.47 11.74 5.19 0.06 -10.41 16 15 N -0.64 -11.41 5.29 -10.94 -0.06 -11.46 16 16 C 0.00 -0.04 6.30 -83.61 -0.53 -0.56 16 17 C -0.12 -2.60 9.90 -39.78 -0.39 -3.00 16 18 C -0.14 -3.55 8.61 -39.26 -0.34 -3.89 16 19 C 0.10 2.69 5.55 -106.80 -0.59 2.09 16 20 C -0.46 -12.03 9.02 -37.86 -0.34 -12.37 16 21 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 22 C 0.07 1.72 5.42 -17.34 -0.09 1.63 16 23 N -0.81 -20.53 10.61 55.55 0.59 -19.94 16 24 Si 0.92 18.67 29.56 -169.99 -5.03 13.64 16 25 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 27 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 28 C -0.20 -5.08 9.74 -39.26 -0.38 -5.46 16 29 C -0.08 -1.91 8.61 -39.78 -0.34 -2.26 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 1.56 6.06 -51.92 -0.31 1.25 16 33 H 0.14 0.83 7.21 -52.49 -0.38 0.45 16 34 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 35 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 36 H 0.16 0.78 8.06 -52.48 -0.42 0.36 16 37 H 0.39 5.72 8.01 -40.82 -0.33 5.39 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 39 H 0.13 3.43 6.15 -52.49 -0.32 3.11 16 40 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 41 H 0.10 2.30 8.06 -52.48 -0.42 1.87 16 42 H 0.11 2.51 6.22 -52.49 -0.33 2.18 16 LS Contribution 375.46 15.07 5.66 5.66 Total: -1.00 -31.76 375.46 -11.01 -42.77 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -4.17 Total: 9.46 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -5.60 Total: -17.80 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: 0.35 Total: -43.25 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.06 Total: -10.41 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.27 Total: -0.07 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.76 -11.01 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015818210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.878 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds