Wall clock time and date at job start Tue Mar 31 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30578 * 122.98843 * 2 1 4 4 C 1.30312 * 117.32806 * 180.28668 * 3 2 1 5 5 C 1.47857 * 124.74452 * 179.72393 * 4 3 2 6 6 C 1.39502 * 119.74101 * 179.70353 * 5 4 3 7 7 C 1.38418 * 119.04652 * 179.75775 * 6 5 4 8 8 C 1.38765 * 118.52210 * 0.50849 * 7 6 5 9 9 C 1.38371 * 119.38819 * 359.73119 * 8 7 6 10 10 N 1.31659 * 120.91772 * 0.02562 * 9 8 7 11 11 S 1.70924 * 110.50873 * 359.72849 * 4 3 2 12 12 C 1.36978 * 122.99301 * 179.78143 * 2 1 3 13 13 C 1.46633 * 126.13051 * 0.02562 * 12 2 1 14 14 O 1.21702 * 119.99622 * 359.70954 * 13 12 2 15 15 N 1.34776 * 120.00093 * 179.71158 * 13 12 2 16 16 C 1.39088 * 119.99749 * 184.28053 * 15 13 12 17 17 C 1.39524 * 119.83522 * 144.68585 * 16 15 13 18 18 C 1.36346 * 120.16617 * 180.27600 * 17 16 15 19 19 C 1.40892 * 119.83207 * 359.45594 * 18 17 16 20 20 C 1.41128 * 120.16116 * 180.27524 * 19 18 17 21 21 H 1.07997 * 119.99362 * 215.03621 * 20 19 18 22 22 C 1.39900 * 119.99972 * 35.03567 * 20 19 18 23 23 N 1.30874 * 120.00501 * 355.54664 * 22 20 19 24 24 Si 1.86800 * 119.99723 * 175.54896 * 22 20 19 25 25 H 1.48500 * 109.47238 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47374 * 120.00062 * 24 22 20 27 27 H 1.48506 * 109.46906 * 240.00051 * 24 22 20 28 28 C 1.40883 * 119.67272 * 0.56278 * 19 18 17 29 29 C 1.36354 * 119.83623 * 359.70992 * 28 19 18 30 30 H 1.09004 * 109.47118 * 270.21300 * 1 2 3 31 31 H 1.09000 * 109.47326 * 30.21929 * 1 2 3 32 32 H 1.09010 * 109.47007 * 150.22042 * 1 2 3 33 33 H 1.07998 * 120.47813 * 0.02562 * 6 5 4 34 34 H 1.08002 * 120.73913 * 180.26318 * 7 6 5 35 35 H 1.08000 * 120.30249 * 179.71147 * 8 7 6 36 36 H 1.08006 * 119.54107 * 180.02562 * 9 8 7 37 37 H 0.96994 * 120.00115 * 4.28947 * 15 13 12 38 38 H 1.08002 * 119.91580 * 359.97438 * 17 16 15 39 39 H 1.08000 * 120.08474 * 179.72770 * 18 17 16 40 40 H 0.96998 * 120.00322 * 180.02562 * 23 22 20 41 41 H 1.08007 * 120.07707 * 179.68840 * 28 19 18 42 42 H 1.07997 * 119.91582 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2179 1.0953 0.0000 4 6 3.5147 0.9667 -0.0058 5 6 4.4730 2.0927 -0.0126 6 6 5.8440 1.8345 -0.0122 7 6 6.7283 2.8993 -0.0237 8 6 6.2137 4.1881 -0.0245 9 6 4.8422 4.3716 -0.0194 10 7 4.0219 3.3418 -0.0134 11 16 3.9527 -0.6854 -0.0045 12 6 2.2528 -1.1489 0.0044 13 6 1.7303 -2.5189 0.0091 14 8 0.5287 -2.7118 0.0147 15 7 2.5807 -3.5645 0.0073 16 6 2.0872 -4.8621 -0.0782 17 6 2.8002 -5.8308 -0.7853 18 6 2.3199 -7.1034 -0.8781 19 6 1.1060 -7.4421 -0.2482 20 6 0.6054 -8.7588 -0.3349 21 1 -0.4597 -8.9288 -0.3909 22 6 1.4887 -9.8436 -0.3483 23 7 2.7806 -9.6354 -0.3685 24 14 0.8241 -11.5893 -0.3375 25 1 -0.6603 -11.5538 -0.3139 26 1 1.2833 -12.3014 -1.5571 27 1 1.3210 -12.3007 0.8676 28 6 0.3915 -6.4585 0.4636 29 6 0.8814 -5.1885 0.5432 30 1 -0.3633 0.0038 1.0277 31 1 -0.3634 0.8880 -0.5172 32 1 -0.3633 -0.8920 -0.5105 33 1 6.2101 0.8185 -0.0074 34 1 7.7951 2.7309 -0.0280 35 1 6.8776 5.0399 -0.0287 36 1 4.4390 5.3736 -0.0204 37 1 3.5368 -3.4122 0.0657 38 1 3.7326 -5.5706 -1.2644 39 1 2.8707 -7.8511 -1.4295 40 1 3.3930 -10.3875 -0.3782 41 1 -0.5423 -6.7097 0.9448 42 1 0.3345 -4.4334 1.0882 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000015818210.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:13 Heat of formation + Delta-G solvation = 54.218476 kcal Electronic energy + Delta-G solvation = -27588.326921 eV Core-core repulsion = 23624.233162 eV Total energy + Delta-G solvation = -3964.093759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.094 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.73308 -41.22384 -40.42658 -38.98798 -36.26903 -34.80734 -34.12699 -33.45993 -31.74391 -31.54117 -31.03138 -29.39401 -26.97544 -26.67239 -24.67312 -23.83371 -23.33557 -22.97994 -21.96568 -20.51076 -19.58003 -19.23287 -18.60161 -17.84977 -17.49352 -16.98228 -16.88476 -16.77753 -16.74264 -15.93646 -15.71454 -15.61688 -15.04386 -14.97678 -14.70893 -14.61376 -14.50814 -14.06090 -14.04007 -13.66039 -13.61356 -13.54641 -13.28341 -12.93052 -12.86097 -12.69311 -12.46252 -12.37139 -11.89325 -11.66084 -11.23918 -11.08735 -11.05641 -10.88964 -10.85194 -10.57217 -10.52979 -10.48848 -9.52591 -9.49246 -8.78600 -8.52436 -6.33817 -1.33632 -0.14075 0.06544 0.27923 0.29767 0.78903 1.13094 1.35948 1.40798 1.49936 1.55681 1.98397 2.09690 2.24597 2.60378 2.78771 2.81156 3.28420 3.60660 3.69279 3.75054 3.88578 3.94754 4.03814 4.09741 4.37472 4.43987 4.50394 4.60481 4.65191 4.68278 4.77157 4.88919 5.04376 5.07627 5.12548 5.16287 5.24096 5.31059 5.38737 5.63106 5.68286 5.85272 5.96957 6.11155 6.36069 6.39790 6.52726 6.66079 6.91319 6.94662 6.95826 7.15014 8.41196 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.024250 B = 0.001801 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.363314 B =15546.124996 C =16608.500269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.145 3.855 3 N -0.471 5.471 4 C 0.078 3.922 5 C 0.149 3.851 6 C -0.148 4.148 7 C -0.067 4.067 8 C -0.143 4.143 9 C 0.089 3.911 10 N -0.486 5.486 11 S 0.280 5.720 12 C -0.323 4.323 13 C 0.585 3.415 14 O -0.542 6.542 15 N -0.636 5.636 16 C 0.015 3.985 17 C -0.114 4.114 18 C -0.158 4.158 19 C 0.070 3.930 20 C -0.496 4.496 21 H 0.071 0.929 22 C 0.030 3.970 23 N -0.837 5.837 24 Si 0.987 3.013 25 H -0.262 1.262 26 H -0.264 1.264 27 H -0.267 1.267 28 C -0.219 4.219 29 C -0.092 4.092 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.156 0.844 34 H 0.182 0.818 35 H 0.180 0.820 36 H 0.183 0.817 37 H 0.410 0.590 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.286 0.714 41 H 0.098 0.902 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.105 24.219 0.499 28.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.004 3.996 3 N -0.186 5.186 4 C -0.194 4.194 5 C 0.011 3.989 6 C -0.170 4.170 7 C -0.092 4.092 8 C -0.163 4.163 9 C -0.070 4.070 10 N -0.197 5.197 11 S 0.540 5.460 12 C -0.448 4.448 13 C 0.373 3.627 14 O -0.421 6.421 15 N -0.280 5.280 16 C -0.078 4.078 17 C -0.134 4.134 18 C -0.178 4.178 19 C 0.068 3.932 20 C -0.527 4.527 21 H 0.090 0.910 22 C -0.182 4.182 23 N -0.465 5.465 24 Si 0.809 3.191 25 H -0.186 1.186 26 H -0.188 1.188 27 H -0.192 1.192 28 C -0.239 4.239 29 C -0.112 4.112 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.173 0.827 34 H 0.199 0.801 35 H 0.197 0.803 36 H 0.200 0.800 37 H 0.247 0.753 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.377 24.080 0.488 27.551 hybrid contribution -0.302 -0.910 0.142 0.970 sum 13.075 23.169 0.631 26.612 Atomic orbital electron populations 1.20618 0.85411 1.04313 1.04066 1.21175 0.99311 0.84654 0.94503 1.66287 1.04597 1.31029 1.16692 1.25400 0.93097 0.97988 1.02902 1.18691 0.89684 0.89081 1.01488 1.22303 0.91403 1.02812 1.00504 1.22040 1.02104 0.91325 0.93738 1.22830 0.96545 0.99617 0.97335 1.23399 0.91042 0.97890 0.94649 1.67579 1.41894 0.99104 1.11105 1.83047 1.01912 0.97723 1.63327 1.25870 0.98478 0.97910 1.22511 1.16912 0.86063 0.82845 0.76926 1.90764 1.15598 1.84923 1.50856 1.42682 1.09785 1.03714 1.71860 1.17240 0.98698 0.83868 1.07976 1.20559 1.00159 0.93209 0.99445 1.21165 0.98999 0.95042 1.02580 1.18073 0.92659 0.93173 0.89340 1.19745 0.94690 0.91419 1.46801 0.91050 1.26707 0.94727 1.05299 0.91510 1.69815 1.03664 1.34809 1.38200 0.85070 0.79326 0.75886 0.78850 1.18610 1.18834 1.19194 1.20939 1.02617 0.94287 1.06035 1.20530 0.95977 0.95667 0.99033 0.89491 0.89528 0.89528 0.82688 0.80092 0.80281 0.79995 0.75298 0.85676 0.86179 0.90348 0.88395 0.87117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.41 9.71 71.23 0.69 -1.72 16 2 C 0.14 4.40 6.83 42.45 0.29 4.69 16 3 N -0.47 -14.09 10.43 -179.82 -1.87 -15.97 16 4 C 0.08 1.92 7.20 87.47 0.63 2.55 16 5 C 0.15 3.10 6.75 41.85 0.28 3.38 16 6 C -0.15 -1.84 9.60 22.62 0.22 -1.62 16 7 C -0.07 -0.44 10.16 22.44 0.23 -0.21 16 8 C -0.14 -0.91 10.11 22.43 0.23 -0.68 16 9 C 0.09 1.15 11.18 84.75 0.95 2.10 16 10 N -0.49 -10.77 10.24 -185.05 -1.89 -12.67 16 11 S 0.28 5.74 21.10 -56.49 -1.19 4.55 16 12 C -0.32 -9.57 6.52 24.17 0.16 -9.41 16 13 C 0.59 20.98 7.61 86.43 0.66 21.64 16 14 O -0.54 -22.90 11.74 -4.36 -0.05 -22.95 16 15 N -0.64 -22.16 5.29 -306.73 -1.62 -23.78 16 16 C 0.02 0.67 6.30 38.61 0.24 0.91 16 17 C -0.11 -5.05 9.90 22.14 0.22 -4.83 16 18 C -0.16 -8.15 8.61 22.48 0.19 -7.95 16 19 C 0.07 3.83 5.55 -21.27 -0.12 3.72 16 20 C -0.50 -27.11 9.02 23.38 0.21 -26.90 16 21 H 0.07 3.82 7.85 -2.91 -0.02 3.79 16 22 C 0.03 1.51 5.42 85.24 0.46 1.98 16 23 N -0.84 -43.13 10.61 21.82 0.23 -42.90 16 24 Si 0.99 38.69 29.56 68.60 2.03 40.72 16 25 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 26 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 27 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 28 C -0.22 -11.33 9.74 22.48 0.22 -11.11 16 29 C -0.09 -4.43 8.61 22.14 0.19 -4.24 16 30 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.09 2.76 6.06 -2.38 -0.01 2.74 16 33 H 0.16 1.27 7.21 -2.91 -0.02 1.25 16 34 H 0.18 -0.16 8.06 -2.91 -0.02 -0.18 16 35 H 0.18 -0.24 8.06 -2.91 -0.02 -0.26 16 36 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 37 H 0.41 11.16 8.01 -92.71 -0.74 10.42 16 38 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 39 H 0.12 6.43 6.15 -2.91 -0.02 6.42 16 40 H 0.29 13.28 8.30 -92.71 -0.77 12.51 16 41 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 42 H 0.11 5.25 6.22 -2.91 -0.02 5.23 16 Total: -1.00 -73.49 375.46 1.93 -71.56 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.36 Total: 29.16 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 5.95 Total: -27.73 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -5.16 Total: -95.31 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.05 Total: -22.95 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Atomic # 16 Polarization: 5.74 SS G_CDS: -1.19 Total: 4.55 kcal Total: -73.49 1.93 -71.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000015818210.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.781 kcal (2) G-P(sol) polarization free energy of solvation -73.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds