Wall clock time and date at job start Tue Mar 31 2020 06:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86796 * 120.00144 * 2 1 4 4 H 1.48500 * 109.47492 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46968 * 300.00169 * 3 2 1 6 6 H 1.48500 * 109.47289 * 60.00070 * 3 2 1 7 7 C 1.38636 * 120.00221 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00234 * 179.97438 * 7 2 1 9 9 O 1.34817 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.35774 * 116.99961 * 174.96424 * 9 7 2 11 11 C 1.38903 * 119.99923 * 5.34468 * 10 9 7 12 12 C 1.38006 * 120.00253 * 180.02562 * 11 10 9 13 13 C 1.38927 * 119.99481 * 359.97438 * 12 11 10 14 14 N 1.39990 * 119.99826 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00220 * 35.12444 * 14 13 12 16 16 O 1.21293 * 119.99869 * 355.48619 * 15 14 13 17 17 C 1.50701 * 120.00052 * 175.49145 * 15 14 13 18 18 C 1.50702 * 109.46961 * 179.97438 * 17 15 14 19 19 C 1.38235 * 119.99894 * 269.72365 * 18 17 15 20 20 C 1.38237 * 120.00103 * 179.74341 * 19 18 17 21 21 C 1.38236 * 119.99552 * 0.55859 * 20 19 18 22 22 C 1.50706 * 119.99967 * 179.72290 * 21 20 19 23 23 F 1.39899 * 109.46714 * 269.97659 * 22 21 20 24 24 F 1.39901 * 109.46953 * 29.97459 * 22 21 20 25 25 F 1.39892 * 109.47323 * 149.97251 * 22 21 20 26 26 C 1.38232 * 120.00098 * 359.69516 * 21 20 19 27 27 C 1.38231 * 120.00125 * 90.00012 * 18 17 15 28 28 C 1.38914 * 119.99806 * 0.25315 * 13 12 11 29 29 C 1.38001 * 120.00046 * 359.49099 * 28 13 12 30 30 H 0.96995 * 120.00343 * 359.97438 * 1 2 3 31 31 H 1.07995 * 120.00060 * 359.97438 * 11 10 9 32 32 H 1.07998 * 120.00519 * 179.97438 * 12 11 10 33 33 H 0.96998 * 119.99772 * 215.12124 * 14 13 12 34 34 H 1.09002 * 109.47152 * 60.00000 * 17 15 14 35 35 H 1.08997 * 109.46995 * 299.99522 * 17 15 14 36 36 H 1.08006 * 120.00146 * 0.02562 * 19 18 17 37 37 H 1.07996 * 120.00325 * 180.27843 * 20 19 18 38 38 H 1.08001 * 120.00142 * 180.02562 * 26 21 20 39 39 H 1.07996 * 119.99867 * 0.02562 * 27 18 17 40 40 H 1.08003 * 120.00112 * 179.74694 * 28 13 12 41 41 H 1.08001 * 120.00442 * 180.25111 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3464 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2006 -0.0010 9 8 1.3349 -2.3682 -0.0005 10 6 2.0703 -3.5045 -0.1073 11 6 3.4577 -3.4372 -0.0982 12 6 4.2053 -4.5921 -0.2072 13 6 3.5701 -5.8221 -0.3255 14 7 4.3284 -6.9935 -0.4366 15 6 5.4952 -7.1067 0.2285 16 8 5.9287 -6.1645 0.8573 17 6 6.2612 -8.4040 0.1908 18 6 7.5202 -8.2678 1.0078 19 6 8.6887 -7.8344 0.4099 20 6 9.8422 -7.7044 1.1604 21 6 9.8300 -8.0189 2.5065 22 6 11.0891 -7.8832 3.3234 23 9 11.7998 -9.0877 3.2883 24 9 11.8809 -6.8589 2.7932 25 9 10.7555 -7.5769 4.6470 26 6 8.6628 -8.4574 3.1033 27 6 7.5079 -8.5818 2.3539 28 6 2.1827 -5.8887 -0.3393 29 6 1.4352 -4.7343 -0.2250 30 1 -0.4850 0.8400 0.0004 31 1 3.9514 -2.4811 -0.0067 32 1 5.2840 -4.5399 -0.2006 33 1 4.0141 -7.7238 -0.9922 34 1 6.5217 -8.6423 -0.8405 35 1 5.6444 -9.2023 0.6035 36 1 8.6993 -7.5929 -0.6428 37 1 10.7541 -7.3614 0.6943 38 1 8.6532 -8.7027 4.1550 39 1 6.5962 -8.9251 2.8200 40 1 1.6889 -6.8445 -0.4353 41 1 0.3565 -4.7865 -0.2316 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016470193.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:32 Heat of formation + Delta-G solvation = -178.635391 kcal Electronic energy + Delta-G solvation = -30614.374608 eV Core-core repulsion = 25623.281184 eV Total energy + Delta-G solvation = -4991.093423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.103 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -51.22148 -48.74632 -48.68652 -41.58743 -40.64360 -39.95342 -38.11808 -35.35512 -34.48380 -34.13197 -32.09040 -31.84881 -30.59151 -28.99841 -27.29586 -26.05283 -24.01196 -23.95335 -23.34228 -22.31309 -21.19845 -19.95111 -19.56531 -19.48703 -19.42677 -19.16312 -18.09205 -17.97123 -16.80226 -16.54755 -16.31772 -16.16407 -15.76772 -15.66810 -15.53682 -15.50092 -15.36740 -15.28884 -15.15212 -14.95937 -14.93239 -14.85290 -14.64815 -14.40378 -14.18444 -13.71953 -13.60047 -13.47084 -13.29838 -13.20072 -12.92562 -12.70355 -12.42522 -12.31937 -12.12548 -12.10609 -11.41092 -11.13794 -10.83416 -10.50166 -10.02873 -10.02682 -9.82164 -8.59549 -8.47811 -6.14341 -0.13166 0.30945 0.52796 0.57804 1.34223 1.40742 1.51880 1.62132 1.70689 2.10973 2.17182 2.59974 2.68832 2.82353 2.98043 3.15347 3.38079 3.52616 3.58900 3.79242 3.89621 3.94444 4.13525 4.15872 4.28707 4.32205 4.49439 4.57764 4.59199 4.68129 4.74759 4.81699 4.95778 5.07846 5.14681 5.16834 5.17521 5.36812 5.45523 5.47136 5.61825 5.71495 5.79021 6.02175 6.19484 6.61140 6.97148 7.31770 7.77084 8.75090 Molecular weight = 365.10amu Principal moments of inertia in cm(-1) A = 0.012359 B = 0.001852 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.088969 B =15115.573894 C =16757.991809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.021 4.021 3 Si 1.016 2.984 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.096 0.904 9 O -0.229 6.229 10 C 0.104 3.896 11 C -0.232 4.232 12 C -0.076 4.076 13 C 0.064 3.936 14 N -0.648 5.648 15 C 0.505 3.495 16 O -0.567 6.567 17 C -0.093 4.093 18 C -0.042 4.042 19 C -0.113 4.113 20 C -0.080 4.080 21 C -0.200 4.200 22 C 0.510 3.490 23 F -0.179 7.179 24 F -0.182 7.182 25 F -0.182 7.182 26 C -0.080 4.080 27 C -0.113 4.113 28 C -0.077 4.077 29 C -0.182 4.182 30 H 0.273 0.727 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.429 0.571 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.153 0.847 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.170 0.830 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.757 -24.847 -0.130 31.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.835 3.165 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.488 4.488 8 H 0.113 0.887 9 O -0.135 6.135 10 C 0.054 3.946 11 C -0.252 4.252 12 C -0.096 4.096 13 C -0.030 4.030 14 N -0.295 5.295 15 C 0.294 3.706 16 O -0.445 6.445 17 C -0.132 4.132 18 C -0.043 4.043 19 C -0.130 4.130 20 C -0.098 4.098 21 C -0.202 4.202 22 C 0.456 3.544 23 F -0.160 7.160 24 F -0.163 7.163 25 F -0.164 7.164 26 C -0.098 4.098 27 C -0.131 4.131 28 C -0.096 4.096 29 C -0.202 4.202 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.143 0.857 33 H 0.268 0.732 34 H 0.163 0.837 35 H 0.162 0.838 36 H 0.170 0.830 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.187 0.813 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 18.725 -24.063 0.365 30.493 hybrid contribution 0.350 1.101 0.211 1.174 sum 19.074 -22.963 0.575 29.857 Atomic orbital electron populations 1.70175 1.07797 1.28713 1.48893 1.26512 0.96876 1.02521 0.95956 0.84571 0.78047 0.75132 0.78728 1.18039 1.19010 1.19255 1.21777 0.92309 0.81621 1.53096 0.88679 1.83932 1.35630 1.12438 1.81520 1.19968 0.91108 0.88433 0.95110 1.21103 0.93359 0.99381 1.11365 1.20933 0.99737 0.90820 0.98152 1.17374 0.90539 0.86101 1.08936 1.43148 1.21321 1.16616 1.48439 1.21374 0.80828 0.90744 0.77632 1.90769 1.68190 1.41976 1.43540 1.20817 0.93330 0.94504 1.04528 1.19821 0.94734 0.95460 0.94257 1.21310 0.91586 0.98618 1.01531 1.21119 1.00275 0.96551 0.91857 1.20057 0.93229 1.10886 0.95992 1.18394 0.84465 0.73614 0.77938 1.93213 1.80573 1.45913 1.96346 1.93181 1.76623 1.60366 1.86172 1.93179 1.92410 1.93035 1.37744 1.21109 0.91417 0.96268 1.01048 1.21301 0.98442 0.99884 0.93491 1.20812 0.91188 0.98256 0.99370 1.20354 1.00355 0.89732 1.09720 0.91788 0.86984 0.85653 0.73159 0.83679 0.83764 0.82963 0.83696 0.83783 0.83155 0.81297 0.85481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.42 13.67 21.61 0.30 -56.13 16 2 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 3 Si 1.02 43.89 29.55 68.60 2.03 45.91 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 7 C -0.41 -24.47 9.48 67.92 0.64 -23.82 16 8 H 0.10 5.33 5.20 -2.91 -0.02 5.31 16 9 O -0.23 -13.80 9.76 -22.87 -0.22 -14.03 16 10 C 0.10 5.20 6.65 22.59 0.15 5.35 16 11 C -0.23 -10.75 9.16 22.37 0.20 -10.54 16 12 C -0.08 -2.94 8.69 22.38 0.19 -2.74 16 13 C 0.06 1.94 6.30 38.17 0.24 2.18 16 14 N -0.65 -12.10 5.34 -303.37 -1.62 -13.72 16 15 C 0.51 10.05 7.67 87.66 0.67 10.72 16 16 O -0.57 -17.81 13.47 -3.07 -0.04 -17.86 16 17 C -0.09 -0.79 5.83 29.10 0.17 -0.62 16 18 C -0.04 -0.59 4.37 -19.87 -0.09 -0.68 16 19 C -0.11 -1.63 9.70 22.27 0.22 -1.42 16 20 C -0.08 -1.31 9.40 22.27 0.21 -1.10 16 21 C -0.20 -3.64 5.45 -19.86 -0.11 -3.75 16 22 C 0.51 9.64 3.36 71.24 0.24 9.88 16 23 F -0.18 -3.33 17.30 44.97 0.78 -2.56 16 24 F -0.18 -3.66 16.46 44.97 0.74 -2.92 16 25 F -0.18 -3.69 16.46 44.97 0.74 -2.95 16 26 C -0.08 -1.34 9.40 22.27 0.21 -1.13 16 27 C -0.11 -1.69 9.70 22.27 0.22 -1.47 16 28 C -0.08 -2.26 9.96 22.38 0.22 -2.04 16 29 C -0.18 -7.27 9.99 22.38 0.22 -7.05 16 30 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 31 H 0.11 5.44 5.63 -2.91 -0.02 5.43 16 32 H 0.13 4.82 6.22 -2.91 -0.02 4.80 16 33 H 0.43 3.77 8.82 -92.71 -0.82 2.96 16 34 H 0.15 0.26 8.08 -2.39 -0.02 0.24 16 35 H 0.14 0.31 8.09 -2.39 -0.02 0.29 16 36 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.15 1.93 7.60 -2.91 -0.02 1.91 16 38 H 0.14 1.98 7.60 -2.91 -0.02 1.96 16 39 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.17 3.22 8.06 -2.91 -0.02 3.19 16 41 H 0.13 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -82.05 371.74 7.09 -74.96 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.31 Total: 18.25 kcal Atomic # 6 Polarization: -33.04 SS G_CDS: 4.08 Total: -28.96 kcal Atomic # 7 Polarization: -68.53 SS G_CDS: -1.32 Total: -69.85 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.26 Total: -31.88 kcal Atomic # 9 Polarization: -10.69 SS G_CDS: 2.26 Total: -8.43 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -82.05 7.09 -74.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016470193.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.673 kcal (2) G-P(sol) polarization free energy of solvation -82.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds