Wall clock time and date at job start Tue Mar 31 2020 07:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47031 * 2 1 4 4 C 1.35955 * 116.99910 * 180.02562 * 3 2 1 5 5 C 1.38188 * 120.00851 * 0.25248 * 4 3 2 6 6 C 1.39767 * 119.85357 * 180.31949 * 5 4 3 7 7 C 1.47348 * 120.06651 * 179.68199 * 6 5 4 8 8 N 1.29828 * 120.00111 * 180.02562 * 7 6 5 9 9 N 1.40102 * 120.00245 * 185.04249 * 8 7 6 10 10 C 1.32245 * 119.36940 * 60.74954 * 9 8 7 11 11 O 1.21269 * 123.09842 * 359.95979 * 10 9 8 12 12 C 1.51305 * 113.79994 * 179.97438 * 10 9 8 13 13 S 1.82471 * 103.00541 * 359.97438 * 12 10 9 14 14 C 1.33470 * 119.36774 * 240.47894 * 9 8 7 15 15 S 1.71198 * 126.16604 * 0.02562 * 14 9 8 16 16 C 1.39833 * 119.86836 * 359.70201 * 6 5 4 17 17 C 1.37755 * 120.01705 * 359.97438 * 16 6 5 18 18 C 1.38970 * 120.14334 * 0.02562 * 17 16 6 19 19 O 1.35693 * 119.93277 * 179.97438 * 18 17 16 20 20 C 1.34785 * 117.00048 * 354.18035 * 19 18 17 21 21 H 1.08003 * 119.99762 * 5.09275 * 20 19 18 22 22 C 1.38631 * 120.00014 * 185.08488 * 20 19 18 23 23 N 1.31569 * 119.99825 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00179 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47069 * 89.99549 * 24 22 20 26 26 H 1.48502 * 109.47270 * 210.00103 * 24 22 20 27 27 H 1.48506 * 109.46882 * 330.00175 * 24 22 20 28 28 H 1.09001 * 109.46527 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46680 * 299.99865 * 1 2 3 30 30 H 1.09001 * 109.46470 * 60.00108 * 1 2 3 31 31 H 1.09001 * 109.47378 * 240.00025 * 2 1 3 32 32 H 1.08999 * 109.47334 * 120.00179 * 2 1 3 33 33 H 1.07999 * 120.06928 * 0.02562 * 5 4 3 34 34 H 1.07996 * 119.99756 * 0.02562 * 7 6 5 35 35 H 1.08996 * 110.70824 * 118.38170 * 12 10 9 36 36 H 1.09003 * 110.70233 * 241.61894 * 12 10 9 37 37 H 1.08000 * 119.99108 * 179.97438 * 16 6 5 38 38 H 1.07999 * 119.93046 * 179.97438 * 17 16 6 39 39 H 0.97000 * 119.99764 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3542 1.5254 -0.0005 5 6 4.1961 0.4297 -0.0063 6 6 5.5812 0.6165 -0.0001 7 6 6.4833 -0.5486 0.0008 8 7 7.7697 -0.3736 0.0071 9 7 8.6273 -1.4764 -0.0986 10 6 8.5716 -2.2403 -1.1767 11 8 7.8056 -2.0358 -2.0943 12 6 9.5515 -3.3930 -1.1595 13 16 10.4076 -3.1804 0.4378 14 6 9.4886 -1.7328 0.8882 15 16 9.6713 -0.8282 2.3302 16 6 6.1092 1.9113 0.0056 17 6 5.2650 2.9998 0.0046 18 6 3.8877 2.8147 -0.0016 19 8 3.0600 3.8900 -0.0020 20 6 3.6330 5.1033 0.1255 21 1 4.7092 5.1935 0.1392 22 6 2.8410 6.2355 0.2388 23 7 3.4004 7.4199 0.3627 24 14 0.9797 6.0795 0.2155 25 1 0.4811 5.8948 1.6020 26 1 0.3869 7.3116 -0.3639 27 1 0.5915 4.9077 -0.6102 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.7847 -0.5689 -0.0109 34 1 6.0743 -1.5481 -0.0037 35 1 9.0250 -4.3469 -1.1912 36 1 10.2557 -3.3126 -1.9876 37 1 7.1792 2.0580 0.0109 38 1 5.6743 3.9992 0.0095 39 1 2.8462 8.2120 0.4424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000016688883.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:16 Heat of formation + Delta-G solvation = 7.971236 kcal Electronic energy + Delta-G solvation = -26983.953841 eV Core-core repulsion = 22919.746846 eV Total energy + Delta-G solvation = -4064.206995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 366.054 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.85271 -41.50985 -39.58561 -38.95986 -38.25220 -35.78316 -34.52503 -32.73281 -31.96291 -31.12189 -30.18283 -28.22151 -27.31301 -25.33367 -24.82502 -23.15260 -22.55449 -21.42071 -20.16496 -19.98906 -19.54890 -19.41892 -18.39448 -17.88072 -17.58791 -17.06105 -16.96656 -16.38179 -16.27713 -15.98491 -15.71798 -15.58445 -15.31376 -14.85853 -14.70869 -14.30178 -14.24692 -14.04729 -13.91782 -13.52308 -13.38094 -13.30852 -13.13040 -12.90010 -12.85923 -12.75480 -12.24987 -12.11353 -12.07989 -11.97864 -11.65820 -11.49519 -11.41941 -10.95717 -10.27387 -9.69567 -9.33701 -9.15386 -8.86757 -8.57302 -6.26295 -1.54161 -0.72218 -0.50190 0.02696 0.41551 0.47569 0.68747 0.79166 1.14149 1.29730 1.35344 1.51992 2.24830 2.32050 2.39068 2.66142 2.81408 2.95087 3.01623 3.35490 3.81200 3.86708 4.07710 4.11485 4.12411 4.12768 4.17711 4.36702 4.37624 4.44257 4.73237 4.83922 4.89671 4.98304 5.02861 5.19564 5.27305 5.39198 5.52792 5.57966 5.64430 5.92108 6.28356 6.52841 6.75619 7.45614 8.53110 Molecular weight = 366.05amu Principal moments of inertia in cm(-1) A = 0.012909 B = 0.002383 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.542774 B =11744.743740 C =13065.753105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.039 3.961 3 O -0.334 6.334 4 C 0.057 3.943 5 C -0.104 4.104 6 C -0.128 4.128 7 C 0.238 3.762 8 N -0.315 5.315 9 N -0.389 5.389 10 C 0.500 3.500 11 O -0.473 6.473 12 C -0.150 4.150 13 S 0.093 5.907 14 C 0.294 3.706 15 S -0.458 6.458 16 C -0.038 4.038 17 C -0.217 4.217 18 C 0.131 3.869 19 O -0.218 6.218 20 C -0.401 4.401 21 H 0.089 0.911 22 C 0.018 3.982 23 N -0.911 5.911 24 Si 0.966 3.034 25 H -0.266 1.266 26 H -0.265 1.265 27 H -0.263 1.263 28 H 0.109 0.891 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.176 0.824 34 H 0.151 0.849 35 H 0.208 0.792 36 H 0.201 0.799 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 -30.087 -4.140 31.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.035 4.035 3 O -0.249 6.249 4 C 0.011 3.989 5 C -0.125 4.125 6 C -0.133 4.133 7 C 0.033 3.967 8 N -0.119 5.119 9 N -0.193 5.193 10 C 0.284 3.716 11 O -0.344 6.344 12 C -0.303 4.303 13 S 0.323 5.677 14 C -0.058 4.058 15 S -0.326 6.326 16 C -0.058 4.058 17 C -0.236 4.236 18 C 0.078 3.922 19 O -0.123 6.123 20 C -0.477 4.477 21 H 0.106 0.894 22 C -0.182 4.182 23 N -0.550 5.550 24 Si 0.788 3.212 25 H -0.191 1.191 26 H -0.189 1.189 27 H -0.187 1.187 28 H 0.128 0.872 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.193 0.807 34 H 0.168 0.832 35 H 0.225 0.775 36 H 0.218 0.782 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.726 -29.151 -3.249 30.332 hybrid contribution -1.708 0.656 -1.139 2.155 sum 6.018 -28.495 -4.388 29.452 Atomic orbital electron populations 1.21814 0.92036 1.04214 1.02661 1.23153 0.96783 0.80852 1.02688 1.86190 1.17720 1.31345 1.89664 1.18001 0.83758 0.90442 1.06690 1.21102 0.91173 0.98183 1.02022 1.17769 0.91481 0.90581 1.13431 1.25034 0.90312 0.99071 0.82256 1.76225 1.04750 1.06497 1.24467 1.46562 1.30548 1.25066 1.17131 1.21458 0.85502 0.83584 0.81016 1.90926 1.38892 1.70686 1.33936 1.25191 1.01307 1.01850 1.01952 1.87659 1.42467 1.20270 1.17278 1.28262 0.87760 0.97442 0.92329 1.93312 1.74568 1.54238 1.10523 1.21076 0.99632 0.90912 0.94188 1.20987 0.91589 1.00485 1.10554 1.19227 0.89966 0.86192 0.96827 1.83577 1.34940 1.13335 1.80425 1.20816 0.94183 0.80886 1.51831 0.89367 1.25240 1.04822 0.93140 0.95013 1.69722 1.38689 0.98670 1.47942 0.85283 0.77912 0.78453 0.79578 1.19065 1.18904 1.18690 0.87224 0.92597 0.92617 0.90393 0.90392 0.80665 0.83215 0.77520 0.78240 0.85037 0.85666 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 10.28 71.98 0.74 -2.14 16 2 C 0.04 0.88 5.46 71.98 0.39 1.28 16 3 O -0.33 -12.04 9.92 -79.06 -0.78 -12.83 16 4 C 0.06 2.13 6.70 22.57 0.15 2.28 16 5 C -0.10 -2.97 8.77 22.63 0.20 -2.77 16 6 C -0.13 -3.92 5.87 -20.12 -0.12 -4.04 16 7 C 0.24 6.01 9.64 87.39 0.84 6.85 16 8 N -0.32 -8.93 9.55 -52.23 -0.50 -9.43 16 9 N -0.39 -8.45 3.13 -311.55 -0.97 -9.43 16 10 C 0.50 7.80 7.69 88.24 0.68 8.48 16 11 O -0.47 -10.40 16.89 -3.00 -0.05 -10.45 16 12 C -0.15 -0.38 7.41 71.43 0.53 0.15 16 13 S 0.09 0.84 23.40 -56.49 -1.32 -0.48 16 14 C 0.29 6.33 7.68 129.99 1.00 7.33 16 15 S -0.46 -14.26 30.65 -56.49 -1.73 -15.99 16 16 C -0.04 -1.38 9.57 22.54 0.22 -1.17 16 17 C -0.22 -9.49 9.14 22.33 0.20 -9.28 16 18 C 0.13 6.06 6.67 22.76 0.15 6.21 16 19 O -0.22 -11.81 8.36 -7.68 -0.06 -11.87 16 20 C -0.40 -23.37 9.94 67.91 0.68 -22.70 16 21 H 0.09 5.33 5.42 -2.91 -0.02 5.32 16 22 C 0.02 1.04 5.49 84.83 0.47 1.51 16 23 N -0.91 -53.85 13.96 21.61 0.30 -53.54 16 24 Si 0.97 45.49 28.62 68.60 1.96 47.45 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 26 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 27 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 28 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.40 7.65 -2.39 -0.02 1.38 16 32 H 0.08 1.41 7.67 -2.39 -0.02 1.39 16 33 H 0.18 3.27 6.28 -2.91 -0.02 3.25 16 34 H 0.15 2.64 8.05 -2.91 -0.02 2.62 16 35 H 0.21 -1.05 8.14 -2.39 -0.02 -1.07 16 36 H 0.20 -0.66 8.14 -2.39 -0.02 -0.68 16 37 H 0.13 4.71 7.54 -2.91 -0.02 4.69 16 38 H 0.13 5.96 5.62 -2.91 -0.02 5.95 16 39 H 0.29 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -81.55 373.36 4.09 -77.46 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.12 Total: 7.11 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 6.13 Total: -8.00 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -1.17 Total: -72.40 kcal Atomic # 8 Polarization: -34.26 SS G_CDS: -0.90 Total: -35.16 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.96 Total: 47.45 kcal Atomic # 16 Polarization: -13.42 SS G_CDS: -3.05 Total: -16.47 kcal Total: -81.55 4.09 -77.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000016688883.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.435 kcal (2) G-P(sol) polarization free energy of solvation -81.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds