Wall clock time and date at job start Tue Mar 31 2020 06:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34857 * 117.00474 * 2 1 4 4 O 1.21613 * 119.99860 * 359.97438 * 3 2 1 5 5 C 1.46647 * 120.00373 * 179.97438 * 3 2 1 6 6 C 1.37857 * 122.77444 * 89.95708 * 5 3 2 7 7 N 1.37373 * 125.37121 * 0.02562 * 6 5 3 8 8 C 1.34769 * 120.00068 * 179.97438 * 7 6 5 9 9 O 1.21888 * 119.99905 * 0.02562 * 8 7 6 10 10 C 1.41038 * 120.00257 * 180.02562 * 8 7 6 11 11 H 1.07995 * 119.99584 * 359.97438 * 10 8 7 12 12 C 1.40159 * 120.00233 * 180.02562 * 10 8 7 13 13 N 1.30626 * 119.99806 * 0.02562 * 12 10 8 14 14 Si 1.86792 * 120.00118 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47039 * 59.99930 * 14 12 10 16 16 H 1.48502 * 109.47228 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47212 * 300.00025 * 14 12 10 18 18 S 1.75621 * 109.25379 * 180.02562 * 6 5 3 19 19 C 1.75785 * 91.57703 * 0.02562 * 18 6 5 20 20 C 1.34754 * 110.77388 * 0.02562 * 19 18 6 21 21 C 1.52350 * 122.94732 * 179.71517 * 20 19 18 22 22 C 1.53116 * 108.75164 * 17.81585 * 21 20 19 23 23 C 1.53154 * 109.09077 * 308.55327 * 22 21 20 24 24 H 1.09002 * 109.64945 * 310.93212 * 23 22 21 25 25 C 1.52997 * 109.55277 * 190.67003 * 23 22 21 26 26 C 1.53008 * 109.47210 * 300.53003 * 25 23 22 27 27 C 1.53000 * 109.47586 * 60.52854 * 25 23 22 28 28 C 1.53004 * 109.47176 * 180.53353 * 25 23 22 29 29 C 1.51635 * 124.71771 * 180.02562 * 19 18 6 30 30 H 1.09003 * 109.47284 * 300.00354 * 1 2 3 31 31 H 1.09000 * 109.46899 * 59.99727 * 1 2 3 32 32 H 1.08996 * 109.47354 * 180.02562 * 1 2 3 33 33 H 0.96998 * 119.99587 * 0.02562 * 7 6 5 34 34 H 0.96999 * 119.99590 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.57496 * 137.21849 * 21 20 19 36 36 H 1.08995 * 109.57584 * 257.60917 * 21 20 19 37 37 H 1.09002 * 109.45484 * 188.74211 * 22 21 20 38 38 H 1.08990 * 109.73482 * 68.53592 * 22 21 20 39 39 H 1.08992 * 109.46743 * 59.99982 * 26 25 23 40 40 H 1.09003 * 109.47248 * 180.02562 * 26 25 23 41 41 H 1.09000 * 109.46784 * 300.00412 * 26 25 23 42 42 H 1.09005 * 109.46464 * 60.00170 * 27 25 23 43 43 H 1.08998 * 109.47628 * 180.02562 * 27 25 23 44 44 H 1.08998 * 109.46940 * 300.00134 * 27 25 23 45 45 H 1.08992 * 109.47352 * 59.99655 * 28 25 23 46 46 H 1.08998 * 109.47134 * 180.02562 * 28 25 23 47 47 H 1.08997 * 109.46524 * 299.99465 * 28 25 23 48 48 H 1.09001 * 109.59071 * 316.30762 * 29 19 18 49 49 H 1.09001 * 109.58772 * 76.59423 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2015 0.0000 4 8 1.4020 2.2215 -0.0005 5 6 3.5288 1.2783 0.0006 6 6 4.2745 1.3162 -1.1583 7 7 3.7644 1.2887 -2.4335 8 6 4.5961 1.3317 -3.4930 9 8 5.8010 1.3945 -3.3199 10 6 4.0724 1.3041 -4.8023 11 1 3.0048 1.2480 -4.9557 12 6 4.9374 1.3483 -5.9042 13 7 6.2287 1.4146 -5.7186 14 14 4.2437 1.3109 -7.6382 15 1 3.3479 2.4784 -7.8382 16 1 5.3579 1.3675 -8.6184 17 1 3.4739 0.0566 -7.8365 18 16 5.9796 1.4052 -0.7470 19 6 5.6156 1.3867 0.9727 20 6 4.2858 1.3169 1.1790 21 6 3.6639 1.2784 2.5693 22 6 4.6981 1.7716 3.5849 23 6 6.0035 0.9952 3.3878 24 1 5.7917 -0.0732 3.3449 25 6 6.9514 1.2829 4.5538 26 6 7.2433 2.7836 4.6155 27 6 6.2991 0.8360 5.8637 28 6 8.2599 0.5169 4.3483 29 6 6.6544 1.4417 2.0759 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 2.8055 1.2391 -2.5712 34 1 6.8273 1.4448 -6.4812 35 1 2.7917 1.9316 2.5974 36 1 3.3659 0.2575 2.8079 37 1 4.3238 1.6040 4.5948 38 1 4.8814 2.8357 3.4365 39 1 6.3113 3.3292 4.7619 40 1 7.9190 2.9884 5.4460 41 1 7.7080 3.1019 3.6824 42 1 6.0912 -0.2332 5.8197 43 1 6.9742 1.0413 6.6944 44 1 5.3670 1.3817 6.0101 45 1 8.7246 0.8353 3.4152 46 1 8.9350 0.7214 5.1792 47 1 8.0519 -0.5522 4.3044 48 1 7.4815 0.7748 1.8327 49 1 7.0253 2.4616 2.1781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017070493.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:29 Heat of formation + Delta-G solvation = -123.355811 kcal Electronic energy + Delta-G solvation = -31430.918538 eV Core-core repulsion = 27255.356003 eV Total energy + Delta-G solvation = -4175.562535 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.149 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.27521 -39.46968 -38.46147 -36.85170 -35.91005 -34.35451 -32.89577 -32.03320 -30.66277 -28.26089 -27.81386 -27.39101 -27.31936 -26.36903 -24.20746 -23.08296 -22.06442 -20.68450 -20.07490 -18.87263 -18.18966 -17.53864 -17.21960 -16.80750 -16.19077 -15.92287 -15.45046 -15.13708 -14.68293 -14.34967 -14.25684 -14.10943 -13.92656 -13.81510 -13.65511 -13.28286 -12.99797 -12.74251 -12.67467 -12.59924 -12.30008 -12.05516 -11.92333 -11.83211 -11.66939 -11.63816 -11.46528 -11.34424 -11.21785 -11.06571 -10.93742 -10.84112 -10.60511 -10.57528 -10.52629 -10.32112 -10.15005 -10.00152 -9.72342 -9.46853 -9.11555 -8.05659 -7.69082 -6.91859 -6.63951 -5.18531 1.68408 2.03249 2.42582 2.74429 2.91845 2.96667 3.01402 3.03380 3.39367 3.79964 4.15733 4.31915 4.60043 4.70425 4.75193 5.08815 5.17760 5.19854 5.21674 5.26180 5.33562 5.39887 5.40738 5.53133 5.54602 5.58188 5.59464 5.65336 5.68963 5.74433 5.80226 5.86182 5.90688 5.94732 5.99720 6.03748 6.06133 6.11610 6.21488 6.26758 6.32490 6.41460 6.57296 6.57695 6.79248 6.99797 7.07150 7.37234 7.60715 7.75587 8.06309 8.52934 8.80681 10.00357 10.23563 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.003023 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.427143 B = 9261.617193 C =11257.478314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.548 3.452 4 O -0.507 6.507 5 C -0.264 4.264 6 C 0.145 3.855 7 N -0.644 5.644 8 C 0.525 3.475 9 O -0.545 6.545 10 C -0.523 4.523 11 H 0.075 0.925 12 C 0.087 3.913 13 N -0.735 5.735 14 Si 0.919 3.081 15 H -0.263 1.263 16 H -0.275 1.275 17 H -0.263 1.263 18 S 0.268 5.732 19 C -0.292 4.292 20 C -0.035 4.035 21 C -0.060 4.060 22 C -0.111 4.111 23 C -0.070 4.070 24 H 0.073 0.927 25 C -0.064 4.064 26 C -0.147 4.147 27 C -0.143 4.143 28 C -0.144 4.144 29 C -0.029 4.029 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.399 0.601 34 H 0.279 0.721 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.069 0.931 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.052 -2.419 16.738 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.270 6.270 3 C 0.390 3.610 4 O -0.395 6.395 5 C -0.281 4.281 6 C -0.081 4.081 7 N -0.283 5.283 8 C 0.337 3.663 9 O -0.431 6.431 10 C -0.557 4.557 11 H 0.093 0.907 12 C -0.139 4.139 13 N -0.361 5.361 14 Si 0.743 3.257 15 H -0.188 1.188 16 H -0.200 1.200 17 H -0.188 1.188 18 S 0.529 5.471 19 C -0.409 4.409 20 C -0.046 4.046 21 C -0.099 4.099 22 C -0.149 4.149 23 C -0.090 4.090 24 H 0.091 0.909 25 C -0.064 4.064 26 C -0.204 4.204 27 C -0.200 4.200 28 C -0.201 4.201 29 C -0.067 4.067 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.234 0.766 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.086 -1.997 15.724 15.851 hybrid contribution -2.658 -0.089 -0.284 2.675 sum -2.573 -2.087 15.440 15.791 Atomic orbital electron populations 1.23230 0.77381 1.03321 1.02289 1.86780 1.22480 1.33664 1.84095 1.20740 0.88532 0.80920 0.70776 1.90824 1.67195 1.36223 1.45242 1.17421 0.89140 1.29076 0.92462 1.22502 0.99418 0.97985 0.88178 1.43633 1.11209 1.71264 1.02185 1.17176 0.85813 0.79428 0.83929 1.90612 1.13908 1.55844 1.82689 1.19825 0.95079 1.51466 0.89367 0.90686 1.25795 0.94360 0.92327 1.01382 1.69960 1.03218 1.29959 1.32966 0.86212 0.79383 0.79961 0.80179 1.18800 1.20024 1.18800 1.85401 0.97618 1.71616 0.92489 1.25268 0.96890 1.17163 1.01608 1.18612 0.91385 1.01827 0.92790 1.20566 0.97593 1.01131 0.90657 1.21682 0.94679 1.00312 0.98185 1.21183 0.94377 1.00213 0.93215 0.90890 1.20546 0.95268 0.95684 0.94928 1.21995 1.01534 0.95125 1.01702 1.21932 1.00523 1.01140 0.96379 1.21920 0.96495 1.00016 1.01680 1.20220 0.94812 1.01401 0.90315 0.92220 0.92019 0.88399 0.76597 0.91009 0.91622 0.91009 0.91565 0.91482 0.92381 0.93154 0.92090 0.92771 0.93030 0.92316 0.92176 0.93039 0.92718 0.91255 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.57 101.05 1.07 1.46 16 2 O -0.35 -5.92 10.58 -40.92 -0.43 -6.36 16 3 C 0.55 10.45 6.22 34.12 0.21 10.66 16 4 O -0.51 -10.47 16.91 -19.35 -0.33 -10.80 16 5 C -0.26 -5.27 5.73 -105.94 -0.61 -5.88 16 6 C 0.14 3.18 7.16 -15.21 -0.11 3.08 16 7 N -0.64 -14.96 5.31 -13.27 -0.07 -15.03 16 8 C 0.52 14.05 7.50 -15.20 -0.11 13.93 16 9 O -0.55 -15.84 12.33 5.02 0.06 -15.78 16 10 C -0.52 -13.67 9.27 -37.80 -0.35 -14.02 16 11 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 12 C 0.09 2.20 5.50 -17.34 -0.10 2.11 16 13 N -0.73 -19.94 11.71 55.56 0.65 -19.29 16 14 Si 0.92 18.46 29.56 -169.99 -5.02 13.44 16 15 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 16 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16 17 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 18 S 0.27 5.52 20.31 -107.50 -2.18 3.34 16 19 C -0.29 -5.00 6.34 -35.08 -0.22 -5.22 16 20 C -0.03 -0.61 5.80 -104.33 -0.60 -1.22 16 21 C -0.06 -0.85 5.64 -27.00 -0.15 -1.01 16 22 C -0.11 -1.29 4.39 -26.59 -0.12 -1.41 16 23 C -0.07 -0.79 1.54 -90.49 -0.14 -0.93 16 24 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 25 C -0.06 -0.59 0.57 -154.50 -0.09 -0.68 16 26 C -0.15 -1.33 7.80 37.16 0.29 -1.04 16 27 C -0.14 -1.17 8.16 37.16 0.30 -0.87 16 28 C -0.14 -1.28 8.14 37.16 0.30 -0.98 16 29 C -0.03 -0.38 4.74 -27.37 -0.13 -0.51 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.40 8.45 8.12 -40.82 -0.33 8.12 16 34 H 0.28 6.81 8.29 -40.82 -0.34 6.47 16 35 H 0.07 0.96 7.97 -51.93 -0.41 0.55 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.65 5.97 -51.93 -0.31 0.34 16 38 H 0.07 0.81 7.00 -51.93 -0.36 0.45 16 39 H 0.06 0.53 6.67 -51.93 -0.35 0.18 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.58 6.23 -51.93 -0.32 0.26 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.47 6.23 -51.93 -0.32 0.15 16 45 H 0.06 0.56 6.68 -51.93 -0.35 0.21 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.89 7.04 -51.93 -0.37 0.52 16 49 H 0.07 0.93 5.98 -51.93 -0.31 0.62 16 LS Contribution 398.51 15.07 6.01 6.01 Total: -1.00 -31.18 398.51 -9.08 -40.26 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -7.21 Total: 6.72 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.55 Total: -2.50 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.58 Total: -34.32 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.70 Total: -32.93 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.44 kcal Atomic # 16 Polarization: 5.52 SS G_CDS: -2.18 Total: 3.34 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.18 -9.08 -40.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017070493.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.093 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds