Wall clock time and date at job start Tue Mar 31 2020 06:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34857 * 117.00474 * 2 1 4 4 O 1.21613 * 119.99860 * 359.97438 * 3 2 1 5 5 C 1.46647 * 120.00373 * 179.97438 * 3 2 1 6 6 C 1.37857 * 122.77444 * 89.95708 * 5 3 2 7 7 N 1.37373 * 125.37121 * 0.02562 * 6 5 3 8 8 C 1.34769 * 120.00068 * 179.97438 * 7 6 5 9 9 O 1.21888 * 119.99905 * 0.02562 * 8 7 6 10 10 C 1.41038 * 120.00257 * 180.02562 * 8 7 6 11 11 H 1.07995 * 119.99584 * 359.97438 * 10 8 7 12 12 C 1.40159 * 120.00233 * 180.02562 * 10 8 7 13 13 N 1.30626 * 119.99806 * 0.02562 * 12 10 8 14 14 Si 1.86792 * 120.00118 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47039 * 59.99930 * 14 12 10 16 16 H 1.48502 * 109.47228 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47212 * 300.00025 * 14 12 10 18 18 S 1.75621 * 109.25379 * 180.02562 * 6 5 3 19 19 C 1.75785 * 91.57703 * 0.02562 * 18 6 5 20 20 C 1.34754 * 110.77388 * 0.02562 * 19 18 6 21 21 C 1.52350 * 122.94732 * 179.71517 * 20 19 18 22 22 C 1.53116 * 108.75164 * 17.81585 * 21 20 19 23 23 C 1.53154 * 109.09077 * 308.55327 * 22 21 20 24 24 H 1.09002 * 109.64945 * 310.93212 * 23 22 21 25 25 C 1.52997 * 109.55277 * 190.67003 * 23 22 21 26 26 C 1.53008 * 109.47210 * 300.53003 * 25 23 22 27 27 C 1.53000 * 109.47586 * 60.52854 * 25 23 22 28 28 C 1.53004 * 109.47176 * 180.53353 * 25 23 22 29 29 C 1.51635 * 124.71771 * 180.02562 * 19 18 6 30 30 H 1.09003 * 109.47284 * 300.00354 * 1 2 3 31 31 H 1.09000 * 109.46899 * 59.99727 * 1 2 3 32 32 H 1.08996 * 109.47354 * 180.02562 * 1 2 3 33 33 H 0.96998 * 119.99587 * 0.02562 * 7 6 5 34 34 H 0.96999 * 119.99590 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.57496 * 137.21849 * 21 20 19 36 36 H 1.08995 * 109.57584 * 257.60917 * 21 20 19 37 37 H 1.09002 * 109.45484 * 188.74211 * 22 21 20 38 38 H 1.08990 * 109.73482 * 68.53592 * 22 21 20 39 39 H 1.08992 * 109.46743 * 59.99982 * 26 25 23 40 40 H 1.09003 * 109.47248 * 180.02562 * 26 25 23 41 41 H 1.09000 * 109.46784 * 300.00412 * 26 25 23 42 42 H 1.09005 * 109.46464 * 60.00170 * 27 25 23 43 43 H 1.08998 * 109.47628 * 180.02562 * 27 25 23 44 44 H 1.08998 * 109.46940 * 300.00134 * 27 25 23 45 45 H 1.08992 * 109.47352 * 59.99655 * 28 25 23 46 46 H 1.08998 * 109.47134 * 180.02562 * 28 25 23 47 47 H 1.08997 * 109.46524 * 299.99465 * 28 25 23 48 48 H 1.09001 * 109.59071 * 316.30762 * 29 19 18 49 49 H 1.09001 * 109.58772 * 76.59423 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2015 0.0000 4 8 1.4020 2.2215 -0.0005 5 6 3.5288 1.2783 0.0006 6 6 4.2745 1.3162 -1.1583 7 7 3.7644 1.2887 -2.4335 8 6 4.5961 1.3317 -3.4930 9 8 5.8010 1.3945 -3.3199 10 6 4.0724 1.3041 -4.8023 11 1 3.0048 1.2480 -4.9557 12 6 4.9374 1.3483 -5.9042 13 7 6.2287 1.4146 -5.7186 14 14 4.2437 1.3109 -7.6382 15 1 3.3479 2.4784 -7.8382 16 1 5.3579 1.3675 -8.6184 17 1 3.4739 0.0566 -7.8365 18 16 5.9796 1.4052 -0.7470 19 6 5.6156 1.3867 0.9727 20 6 4.2858 1.3169 1.1790 21 6 3.6639 1.2784 2.5693 22 6 4.6981 1.7716 3.5849 23 6 6.0035 0.9952 3.3878 24 1 5.7917 -0.0732 3.3449 25 6 6.9514 1.2829 4.5538 26 6 7.2433 2.7836 4.6155 27 6 6.2991 0.8360 5.8637 28 6 8.2599 0.5169 4.3483 29 6 6.6544 1.4417 2.0759 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 2.8055 1.2391 -2.5712 34 1 6.8273 1.4448 -6.4812 35 1 2.7917 1.9316 2.5974 36 1 3.3659 0.2575 2.8079 37 1 4.3238 1.6040 4.5948 38 1 4.8814 2.8357 3.4365 39 1 6.3113 3.3292 4.7619 40 1 7.9190 2.9884 5.4460 41 1 7.7080 3.1019 3.6824 42 1 6.0912 -0.2332 5.8197 43 1 6.9742 1.0413 6.6944 44 1 5.3670 1.3817 6.0101 45 1 8.7246 0.8353 3.4152 46 1 8.9350 0.7214 5.1792 47 1 8.0519 -0.5522 4.3044 48 1 7.4815 0.7748 1.8327 49 1 7.0253 2.4616 2.1781 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000017070493.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:25 Heat of formation + Delta-G solvation = -140.321034 kcal Electronic energy + Delta-G solvation = -31431.654205 eV Core-core repulsion = 27255.356003 eV Total energy + Delta-G solvation = -4176.298202 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.149 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.72154 -40.52731 -40.28951 -38.18309 -37.34009 -35.96529 -34.77998 -33.46256 -31.80581 -29.76580 -29.17575 -28.20253 -28.04896 -27.75770 -25.59641 -24.37316 -23.24786 -22.40218 -21.53737 -20.24936 -19.52471 -18.88241 -18.64170 -18.32330 -17.90821 -17.51369 -16.72978 -16.50454 -16.06958 -15.70818 -15.50831 -15.27184 -15.14959 -14.97453 -14.71451 -14.59574 -14.46176 -14.11247 -13.96244 -13.76882 -13.39539 -13.34904 -13.06804 -13.01392 -12.90995 -12.81661 -12.63362 -12.56473 -12.46861 -12.44837 -12.17219 -12.10878 -11.89709 -11.84214 -11.72250 -11.53394 -11.20175 -11.09890 -10.97087 -10.93467 -10.88847 -10.00033 -9.30873 -8.55753 -8.54721 -7.19781 0.06640 0.43314 0.90420 1.29974 1.35870 1.37911 1.43786 1.51630 1.98596 2.12398 2.27284 2.59132 3.41266 3.69665 3.79987 3.89982 3.99309 4.01538 4.23711 4.27402 4.29441 4.34499 4.38751 4.45598 4.55965 4.64629 4.65857 4.68300 4.79510 4.86762 4.90650 4.94348 5.02637 5.04439 5.07243 5.11312 5.16567 5.18350 5.21687 5.24904 5.31851 5.35247 5.45646 5.53509 5.59003 5.65192 5.71366 5.71549 5.77556 5.85822 6.56111 6.60319 6.92546 8.04290 8.35527 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.003023 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.427143 B = 9261.617193 C =11257.478314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.358 6.358 3 C 0.553 3.447 4 O -0.528 6.528 5 C -0.253 4.253 6 C 0.105 3.895 7 N -0.647 5.647 8 C 0.512 3.488 9 O -0.581 6.581 10 C -0.551 4.551 11 H 0.091 0.909 12 C 0.036 3.964 13 N -0.783 5.783 14 Si 1.003 2.997 15 H -0.255 1.255 16 H -0.267 1.267 17 H -0.252 1.252 18 S 0.214 5.786 19 C -0.262 4.262 20 C -0.053 4.053 21 C -0.056 4.056 22 C -0.106 4.106 23 C -0.064 4.064 24 H 0.071 0.929 25 C -0.058 4.058 26 C -0.148 4.148 27 C -0.141 4.141 28 C -0.145 4.145 29 C -0.031 4.031 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.135 0.865 33 H 0.405 0.595 34 H 0.286 0.714 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.075 0.925 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.268 -3.010 18.624 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.275 6.275 3 C 0.395 3.605 4 O -0.418 6.418 5 C -0.271 4.271 6 C -0.118 4.118 7 N -0.287 5.287 8 C 0.324 3.676 9 O -0.469 6.469 10 C -0.585 4.585 11 H 0.109 0.891 12 C -0.185 4.185 13 N -0.410 5.410 14 Si 0.821 3.179 15 H -0.179 1.179 16 H -0.191 1.191 17 H -0.176 1.176 18 S 0.476 5.524 19 C -0.379 4.379 20 C -0.063 4.063 21 C -0.095 4.095 22 C -0.143 4.143 23 C -0.084 4.084 24 H 0.090 0.910 25 C -0.058 4.058 26 C -0.205 4.205 27 C -0.198 4.198 28 C -0.202 4.202 29 C -0.069 4.069 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.153 0.847 33 H 0.240 0.760 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.094 0.906 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.148 -2.606 17.650 17.878 hybrid contribution -2.324 0.065 -0.666 2.419 sum -3.472 -2.541 16.984 17.521 Atomic orbital electron populations 1.23655 0.74530 1.05982 1.02848 1.86743 1.25240 1.32075 1.83398 1.20549 0.88161 0.81364 0.70387 1.90810 1.67437 1.37007 1.46507 1.17879 0.90143 1.26432 0.92639 1.22679 0.99810 1.01050 0.88216 1.43192 1.10973 1.72256 1.02266 1.17486 0.85818 0.79233 0.85053 1.90583 1.15237 1.57234 1.83859 1.20335 0.96226 1.52074 0.89876 0.89113 1.26991 0.94401 0.90934 1.06145 1.70082 1.05025 1.31010 1.34860 0.84976 0.78780 0.80472 0.73682 1.17907 1.19087 1.17614 1.85434 0.98583 1.72337 0.96006 1.25608 0.97835 1.14616 0.99877 1.19092 0.91418 1.01856 0.93969 1.20652 0.97979 1.01987 0.88888 1.21691 0.93995 0.99931 0.98729 1.21160 0.94633 0.99958 0.92627 0.91035 1.20496 0.94886 0.95907 0.94560 1.22006 1.01821 0.94891 1.01741 1.21917 1.00824 1.01303 0.95746 1.21933 0.96528 0.99984 1.01792 1.20431 0.94081 1.02322 0.90115 0.91126 0.92074 0.84721 0.75979 0.90344 0.92000 0.89718 0.88847 0.91847 0.92272 0.91986 0.92989 0.92569 0.92045 0.91858 0.92957 0.91901 0.92674 0.90628 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.57 113.37 1.20 1.71 16 2 O -0.36 -11.66 10.58 -57.70 -0.61 -12.27 16 3 C 0.55 21.02 6.22 70.02 0.44 21.46 16 4 O -0.53 -21.77 16.91 19.47 0.33 -21.44 16 5 C -0.25 -10.27 5.73 -20.72 -0.12 -10.39 16 6 C 0.11 4.84 7.16 83.73 0.60 5.44 16 7 N -0.65 -31.59 5.31 -314.02 -1.67 -33.25 16 8 C 0.51 28.86 7.50 84.93 0.64 29.49 16 9 O -0.58 -35.82 12.33 -4.95 -0.06 -35.88 16 10 C -0.55 -29.73 9.27 23.42 0.22 -29.51 16 11 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 12 C 0.04 1.87 5.50 85.34 0.47 2.34 16 13 N -0.78 -44.06 11.71 21.86 0.26 -43.80 16 14 Si 1.00 37.94 29.56 68.60 2.03 39.96 16 15 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 16 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 17 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 18 S 0.21 9.30 20.31 -56.49 -1.15 8.16 16 19 C -0.26 -8.99 6.34 25.18 0.16 -8.83 16 20 C -0.05 -1.84 5.80 -19.68 -0.11 -1.95 16 21 C -0.06 -1.48 5.64 30.42 0.17 -1.30 16 22 C -0.11 -2.18 4.39 30.68 0.13 -2.04 16 23 C -0.06 -1.29 1.54 -10.71 -0.02 -1.31 16 24 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 25 C -0.06 -0.91 0.57 -52.18 -0.03 -0.94 16 26 C -0.15 -2.29 7.80 71.98 0.56 -1.73 16 27 C -0.14 -1.81 8.16 71.98 0.59 -1.23 16 28 C -0.15 -2.25 8.14 71.98 0.59 -1.66 16 29 C -0.03 -0.78 4.74 30.18 0.14 -0.64 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.40 17.97 8.12 -92.71 -0.75 17.22 16 34 H 0.29 14.42 8.29 -92.71 -0.77 13.65 16 35 H 0.06 1.70 7.97 -2.39 -0.02 1.68 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.09 1.46 5.97 -2.39 -0.01 1.45 16 38 H 0.06 1.38 7.00 -2.39 -0.02 1.36 16 39 H 0.06 0.91 6.67 -2.39 -0.02 0.90 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.05 0.90 6.23 -2.39 -0.01 0.88 16 42 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.06 0.76 6.23 -2.39 -0.01 0.75 16 45 H 0.05 0.88 6.68 -2.39 -0.02 0.87 16 46 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.08 1.87 7.04 -2.39 -0.02 1.86 16 49 H 0.08 2.01 5.98 -2.39 -0.01 2.00 16 Total: -1.00 -71.20 398.51 4.99 -66.21 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: 0.24 Total: 33.41 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 5.62 Total: -1.09 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -1.41 Total: -77.05 kcal Atomic # 8 Polarization: -69.25 SS G_CDS: -0.34 Total: -69.60 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.96 kcal Atomic # 16 Polarization: 9.30 SS G_CDS: -1.15 Total: 8.16 kcal Total: -71.20 4.99 -66.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017070493.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.113 kcal (2) G-P(sol) polarization free energy of solvation -71.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds