Wall clock time and date at job start Tue Mar 31 2020 06:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34861 * 116.99412 * 2 1 4 4 O 1.21610 * 120.00517 * 0.02562 * 3 2 1 5 5 C 1.46656 * 119.99881 * 180.02562 * 3 2 1 6 6 C 1.37851 * 122.77248 * 270.02663 * 5 3 2 7 7 N 1.37368 * 125.37013 * 359.96176 * 6 5 3 8 8 C 1.34776 * 119.99743 * 180.02562 * 7 6 5 9 9 O 1.21887 * 120.00224 * 359.97438 * 8 7 6 10 10 C 1.41040 * 120.00198 * 180.02562 * 8 7 6 11 11 H 1.07999 * 119.99766 * 359.97438 * 10 8 7 12 12 C 1.40159 * 120.00323 * 180.02562 * 10 8 7 13 13 N 1.30623 * 119.99863 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 120.00431 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47208 * 89.99617 * 14 12 10 16 16 H 1.48496 * 109.47337 * 209.99562 * 14 12 10 17 17 H 1.48502 * 109.46932 * 329.99824 * 14 12 10 18 18 S 1.75614 * 109.25187 * 179.97438 * 6 5 3 19 19 C 1.75791 * 91.57977 * 0.02562 * 18 6 5 20 20 C 1.34742 * 110.76729 * 359.75778 * 19 18 6 21 21 C 1.52356 * 122.94137 * 179.73291 * 20 19 18 22 22 C 1.52955 * 108.89065 * 343.02693 * 21 20 19 23 23 C 1.53158 * 109.21985 * 50.95320 * 22 21 20 24 24 H 1.09003 * 109.55981 * 49.15962 * 23 22 21 25 25 C 1.53002 * 109.55509 * 169.47085 * 23 22 21 26 26 C 1.52995 * 109.47244 * 179.47125 * 25 23 22 27 27 C 1.53004 * 109.47332 * 299.47563 * 25 23 22 28 28 C 1.53006 * 109.46923 * 59.47488 * 25 23 22 29 29 C 1.51635 * 124.71839 * 179.97438 * 19 18 6 30 30 H 1.09000 * 109.46448 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46780 * 299.99566 * 1 2 3 32 32 H 1.08996 * 109.47674 * 59.99835 * 1 2 3 33 33 H 0.96997 * 120.00602 * 359.97438 * 7 6 5 34 34 H 0.97001 * 120.00273 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.70867 * 223.11488 * 21 20 19 36 36 H 1.08999 * 109.49615 * 102.82434 * 21 20 19 37 37 H 1.09001 * 109.51477 * 291.03505 * 22 21 20 38 38 H 1.08994 * 109.51412 * 170.87254 * 22 21 20 39 39 H 1.09006 * 109.47309 * 60.00394 * 26 25 23 40 40 H 1.08999 * 109.47302 * 179.97438 * 26 25 23 41 41 H 1.08994 * 109.47373 * 300.00247 * 26 25 23 42 42 H 1.08997 * 109.46704 * 59.99858 * 27 25 23 43 43 H 1.08999 * 109.47320 * 180.02562 * 27 25 23 44 44 H 1.08996 * 109.46440 * 299.99752 * 27 25 23 45 45 H 1.08994 * 109.47191 * 60.00061 * 28 25 23 46 46 H 1.08999 * 109.46877 * 179.97438 * 28 25 23 47 47 H 1.09001 * 109.46646 * 299.99772 * 28 25 23 48 48 H 1.09002 * 109.59051 * 283.29473 * 29 19 18 49 49 H 1.09003 * 109.58950 * 43.58620 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2017 0.0000 4 8 1.4018 2.2216 0.0005 5 6 3.5287 1.2786 -0.0006 6 6 4.2744 1.3169 1.1582 7 7 3.7642 1.2900 2.4334 8 6 4.5959 1.3333 3.4930 9 8 5.8008 1.3960 3.3199 10 6 4.0722 1.3052 4.8022 11 1 3.0046 1.2493 4.9556 12 6 4.9371 1.3508 5.9042 13 7 6.2283 1.4189 5.7186 14 14 4.2434 1.3142 7.6383 15 1 4.1333 -0.0936 8.0978 16 1 5.1467 2.0628 8.5487 17 1 2.8987 1.9443 7.6469 18 16 5.9794 1.4059 0.7470 19 6 5.6154 1.3885 -0.9727 20 6 4.2859 1.3142 -1.1790 21 6 3.6634 1.2877 -2.5693 22 6 4.6980 1.7761 -3.5845 23 6 6.0030 0.9988 -3.3883 24 1 5.7888 -0.0691 -3.3458 25 6 6.9510 1.2871 -4.5540 26 6 8.2589 0.5202 -4.3494 27 6 6.2984 0.8421 -5.8644 28 6 7.2439 2.7877 -4.6141 29 6 6.6542 1.4441 -2.0760 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.8053 1.2405 2.5712 34 1 6.8269 1.4501 6.4812 35 1 2.7910 1.9407 -2.5940 36 1 3.3639 0.2687 -2.8144 37 1 4.8818 2.8399 -3.4340 38 1 4.3236 1.6099 -4.5946 39 1 8.0504 -0.5489 -4.3067 40 1 8.9342 0.7252 -5.1801 41 1 8.7239 0.8372 -3.4160 42 1 5.3666 1.3886 -6.0100 43 1 6.9740 1.0471 -6.6948 44 1 6.0898 -0.2269 -5.8215 45 1 7.7089 3.1048 -3.6807 46 1 7.9197 2.9931 -5.4443 47 1 6.3120 3.3341 -4.7599 48 1 7.0238 2.4643 -2.1789 49 1 7.4821 0.7783 -1.8322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017070494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:32 Heat of formation + Delta-G solvation = -123.370382 kcal Electronic energy + Delta-G solvation = -31431.062367 eV Core-core repulsion = 27255.499201 eV Total energy + Delta-G solvation = -4175.563166 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.149 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -40.27566 -39.47150 -38.46196 -36.85230 -35.91033 -34.35735 -32.89766 -32.03678 -30.66762 -28.26080 -27.81358 -27.39084 -27.32041 -26.36908 -24.20706 -23.08673 -22.06175 -20.68577 -20.07369 -18.87466 -18.18919 -17.53853 -17.21992 -16.80737 -16.19245 -15.92486 -15.45133 -15.13958 -14.68244 -14.34824 -14.25998 -14.10582 -13.92588 -13.81450 -13.65761 -13.28580 -13.00264 -12.74064 -12.67707 -12.59884 -12.30115 -12.05590 -11.92356 -11.83139 -11.66833 -11.63509 -11.46538 -11.35322 -11.22095 -11.07456 -10.93621 -10.84124 -10.60333 -10.57534 -10.50029 -10.31727 -10.15364 -10.00517 -9.72271 -9.47141 -9.12203 -8.05525 -7.69072 -6.91905 -6.64184 -5.18512 1.68404 2.03174 2.42589 2.74458 2.91375 2.95017 3.01539 3.05281 3.39451 3.79909 4.15609 4.31865 4.59987 4.70388 4.75096 5.08589 5.17772 5.19877 5.21626 5.26180 5.33609 5.39814 5.40747 5.53208 5.54756 5.58147 5.59504 5.65372 5.68963 5.74418 5.80240 5.86149 5.90610 5.94761 5.99857 6.03767 6.06153 6.11475 6.21452 6.26593 6.32581 6.41417 6.57193 6.57652 6.79312 6.99832 7.07165 7.37254 7.60711 7.75881 8.06312 8.53036 8.80609 10.00250 10.23406 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.003022 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.425639 B = 9261.838010 C =11257.689542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.548 3.452 4 O -0.507 6.507 5 C -0.264 4.264 6 C 0.145 3.855 7 N -0.644 5.644 8 C 0.524 3.476 9 O -0.545 6.545 10 C -0.522 4.522 11 H 0.075 0.925 12 C 0.086 3.914 13 N -0.734 5.734 14 Si 0.919 3.081 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.261 1.261 18 S 0.268 5.732 19 C -0.292 4.292 20 C -0.035 4.035 21 C -0.060 4.060 22 C -0.111 4.111 23 C -0.070 4.070 24 H 0.073 0.927 25 C -0.064 4.064 26 C -0.144 4.144 27 C -0.143 4.143 28 C -0.147 4.147 29 C -0.029 4.029 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.399 0.601 34 H 0.278 0.722 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.049 0.951 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.054 -2.411 -16.744 17.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.270 6.270 3 C 0.390 3.610 4 O -0.395 6.395 5 C -0.281 4.281 6 C -0.081 4.081 7 N -0.283 5.283 8 C 0.336 3.664 9 O -0.430 6.430 10 C -0.557 4.557 11 H 0.094 0.906 12 C -0.139 4.139 13 N -0.361 5.361 14 Si 0.742 3.258 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.185 1.185 18 S 0.529 5.471 19 C -0.409 4.409 20 C -0.046 4.046 21 C -0.100 4.100 22 C -0.149 4.149 23 C -0.090 4.090 24 H 0.091 0.909 25 C -0.064 4.064 26 C -0.201 4.201 27 C -0.200 4.200 28 C -0.204 4.204 29 C -0.068 4.068 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.234 0.766 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.091 0.909 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.078 -1.984 -15.731 15.856 hybrid contribution -2.649 -0.098 0.285 2.667 sum -2.571 -2.083 -15.445 15.796 Atomic orbital electron populations 1.23231 0.77381 1.03321 1.02289 1.86784 1.22482 1.33656 1.84098 1.20743 0.88532 0.80921 0.70775 1.90823 1.67191 1.36224 1.45238 1.17424 0.89132 1.29081 0.92457 1.22498 0.99418 0.97985 0.88181 1.43634 1.11213 1.71260 1.02184 1.17188 0.85814 0.79426 0.83939 1.90611 1.13910 1.55827 1.82693 1.19858 0.95108 1.51386 0.89350 0.90646 1.25798 0.94359 0.92320 1.01390 1.69967 1.03229 1.30030 1.32857 0.86160 0.79888 0.79273 0.80447 1.19209 1.19916 1.18488 1.85401 0.97617 1.71624 0.92493 1.25265 0.96906 1.17142 1.01608 1.18606 0.91387 1.01826 0.92781 1.20533 0.97583 1.01173 0.90663 1.21655 0.94697 1.00339 0.98183 1.21183 0.94362 1.00212 0.93220 0.90892 1.20542 0.95263 0.95686 0.94919 1.21920 0.96498 1.00011 1.01682 1.21932 1.00518 1.01147 0.96377 1.21995 1.01535 0.95122 1.01704 1.20224 0.94809 1.01415 0.90306 0.88401 0.92024 0.92210 0.76592 0.91066 0.91563 0.91108 0.91516 0.91540 0.92717 0.93038 0.92176 0.92310 0.93029 0.92776 0.92088 0.93152 0.92377 0.90872 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.57 101.05 1.07 1.46 16 2 O -0.35 -5.92 10.58 -40.93 -0.43 -6.36 16 3 C 0.55 10.45 6.22 34.13 0.21 10.66 16 4 O -0.51 -10.47 16.91 -19.35 -0.33 -10.80 16 5 C -0.26 -5.27 5.73 -105.94 -0.61 -5.88 16 6 C 0.14 3.18 7.16 -15.21 -0.11 3.08 16 7 N -0.64 -14.95 5.31 -13.27 -0.07 -15.02 16 8 C 0.52 14.04 7.50 -15.20 -0.11 13.92 16 9 O -0.55 -15.84 12.33 5.02 0.06 -15.78 16 10 C -0.52 -13.65 9.28 -37.80 -0.35 -14.00 16 11 H 0.08 1.80 7.85 -52.49 -0.41 1.39 16 12 C 0.09 2.20 5.50 -17.34 -0.10 2.10 16 13 N -0.73 -19.92 11.71 55.56 0.65 -19.27 16 14 Si 0.92 18.46 29.56 -169.99 -5.02 13.43 16 15 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 16 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 17 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 18 S 0.27 5.52 20.31 -107.50 -2.18 3.33 16 19 C -0.29 -5.00 6.34 -35.09 -0.22 -5.22 16 20 C -0.03 -0.61 5.80 -104.33 -0.60 -1.21 16 21 C -0.06 -0.85 5.63 -27.08 -0.15 -1.01 16 22 C -0.11 -1.29 4.39 -26.67 -0.12 -1.41 16 23 C -0.07 -0.79 1.55 -90.48 -0.14 -0.93 16 24 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 25 C -0.06 -0.59 0.57 -154.50 -0.09 -0.68 16 26 C -0.14 -1.28 8.14 37.15 0.30 -0.98 16 27 C -0.14 -1.17 8.16 37.16 0.30 -0.87 16 28 C -0.15 -1.33 7.80 37.16 0.29 -1.04 16 29 C -0.03 -0.38 4.74 -27.36 -0.13 -0.51 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.40 8.45 8.12 -40.82 -0.33 8.12 16 34 H 0.28 6.77 8.29 -40.82 -0.34 6.44 16 35 H 0.07 0.97 7.97 -51.93 -0.41 0.56 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.81 7.00 -51.93 -0.36 0.44 16 38 H 0.07 0.65 5.97 -51.93 -0.31 0.34 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.56 6.68 -51.93 -0.35 0.21 16 42 H 0.06 0.47 6.23 -51.93 -0.32 0.15 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.58 6.23 -51.93 -0.32 0.26 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.53 6.68 -51.93 -0.35 0.18 16 48 H 0.07 0.93 5.97 -51.93 -0.31 0.62 16 49 H 0.07 0.89 7.05 -51.93 -0.37 0.52 16 LS Contribution 398.49 15.07 6.01 6.01 Total: -1.00 -31.19 398.49 -9.08 -40.28 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -7.21 Total: 6.68 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.56 Total: -2.50 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.58 Total: -34.30 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.70 Total: -32.93 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.43 kcal Atomic # 16 Polarization: 5.52 SS G_CDS: -2.18 Total: 3.33 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.19 -9.08 -40.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017070494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.094 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds