Wall clock time and date at job start Tue Mar 31 2020 06:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34861 * 116.99412 * 2 1 4 4 O 1.21610 * 120.00517 * 0.02562 * 3 2 1 5 5 C 1.46656 * 119.99881 * 180.02562 * 3 2 1 6 6 C 1.37851 * 122.77248 * 270.02663 * 5 3 2 7 7 N 1.37368 * 125.37013 * 359.96176 * 6 5 3 8 8 C 1.34776 * 119.99743 * 180.02562 * 7 6 5 9 9 O 1.21887 * 120.00224 * 359.97438 * 8 7 6 10 10 C 1.41040 * 120.00198 * 180.02562 * 8 7 6 11 11 H 1.07999 * 119.99766 * 359.97438 * 10 8 7 12 12 C 1.40159 * 120.00323 * 180.02562 * 10 8 7 13 13 N 1.30623 * 119.99863 * 359.97438 * 12 10 8 14 14 Si 1.86801 * 120.00431 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47208 * 89.99617 * 14 12 10 16 16 H 1.48496 * 109.47337 * 209.99562 * 14 12 10 17 17 H 1.48502 * 109.46932 * 329.99824 * 14 12 10 18 18 S 1.75614 * 109.25187 * 179.97438 * 6 5 3 19 19 C 1.75791 * 91.57977 * 0.02562 * 18 6 5 20 20 C 1.34742 * 110.76729 * 359.75778 * 19 18 6 21 21 C 1.52356 * 122.94137 * 179.73291 * 20 19 18 22 22 C 1.52955 * 108.89065 * 343.02693 * 21 20 19 23 23 C 1.53158 * 109.21985 * 50.95320 * 22 21 20 24 24 H 1.09003 * 109.55981 * 49.15962 * 23 22 21 25 25 C 1.53002 * 109.55509 * 169.47085 * 23 22 21 26 26 C 1.52995 * 109.47244 * 179.47125 * 25 23 22 27 27 C 1.53004 * 109.47332 * 299.47563 * 25 23 22 28 28 C 1.53006 * 109.46923 * 59.47488 * 25 23 22 29 29 C 1.51635 * 124.71839 * 179.97438 * 19 18 6 30 30 H 1.09000 * 109.46448 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46780 * 299.99566 * 1 2 3 32 32 H 1.08996 * 109.47674 * 59.99835 * 1 2 3 33 33 H 0.96997 * 120.00602 * 359.97438 * 7 6 5 34 34 H 0.97001 * 120.00273 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.70867 * 223.11488 * 21 20 19 36 36 H 1.08999 * 109.49615 * 102.82434 * 21 20 19 37 37 H 1.09001 * 109.51477 * 291.03505 * 22 21 20 38 38 H 1.08994 * 109.51412 * 170.87254 * 22 21 20 39 39 H 1.09006 * 109.47309 * 60.00394 * 26 25 23 40 40 H 1.08999 * 109.47302 * 179.97438 * 26 25 23 41 41 H 1.08994 * 109.47373 * 300.00247 * 26 25 23 42 42 H 1.08997 * 109.46704 * 59.99858 * 27 25 23 43 43 H 1.08999 * 109.47320 * 180.02562 * 27 25 23 44 44 H 1.08996 * 109.46440 * 299.99752 * 27 25 23 45 45 H 1.08994 * 109.47191 * 60.00061 * 28 25 23 46 46 H 1.08999 * 109.46877 * 179.97438 * 28 25 23 47 47 H 1.09001 * 109.46646 * 299.99772 * 28 25 23 48 48 H 1.09002 * 109.59051 * 283.29473 * 29 19 18 49 49 H 1.09003 * 109.58950 * 43.58620 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2017 0.0000 4 8 1.4018 2.2216 0.0005 5 6 3.5287 1.2786 -0.0006 6 6 4.2744 1.3169 1.1582 7 7 3.7642 1.2900 2.4334 8 6 4.5959 1.3333 3.4930 9 8 5.8008 1.3960 3.3199 10 6 4.0722 1.3052 4.8022 11 1 3.0046 1.2493 4.9556 12 6 4.9371 1.3508 5.9042 13 7 6.2283 1.4189 5.7186 14 14 4.2434 1.3142 7.6383 15 1 4.1333 -0.0936 8.0978 16 1 5.1467 2.0628 8.5487 17 1 2.8987 1.9443 7.6469 18 16 5.9794 1.4059 0.7470 19 6 5.6154 1.3885 -0.9727 20 6 4.2859 1.3142 -1.1790 21 6 3.6634 1.2877 -2.5693 22 6 4.6980 1.7761 -3.5845 23 6 6.0030 0.9988 -3.3883 24 1 5.7888 -0.0691 -3.3458 25 6 6.9510 1.2871 -4.5540 26 6 8.2589 0.5202 -4.3494 27 6 6.2984 0.8421 -5.8644 28 6 7.2439 2.7877 -4.6141 29 6 6.6542 1.4441 -2.0760 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.8053 1.2405 2.5712 34 1 6.8269 1.4501 6.4812 35 1 2.7910 1.9407 -2.5940 36 1 3.3639 0.2687 -2.8144 37 1 4.8818 2.8399 -3.4340 38 1 4.3236 1.6099 -4.5946 39 1 8.0504 -0.5489 -4.3067 40 1 8.9342 0.7252 -5.1801 41 1 8.7239 0.8372 -3.4160 42 1 5.3666 1.3886 -6.0100 43 1 6.9740 1.0471 -6.6948 44 1 6.0898 -0.2269 -5.8215 45 1 7.7089 3.1048 -3.6807 46 1 7.9197 2.9931 -5.4443 47 1 6.3120 3.3341 -4.7599 48 1 7.0238 2.4643 -2.1789 49 1 7.4821 0.7783 -1.8322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000017070494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:31 Heat of formation + Delta-G solvation = -140.341233 kcal Electronic energy + Delta-G solvation = -31431.798278 eV Core-core repulsion = 27255.499201 eV Total energy + Delta-G solvation = -4176.299078 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.149 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.72171 -40.52967 -40.28998 -38.18331 -37.34031 -35.96722 -34.78119 -33.46700 -31.81116 -29.76615 -29.17553 -28.20208 -28.04966 -27.75767 -25.59658 -24.37577 -23.24669 -22.40338 -21.53642 -20.24887 -19.52669 -18.88409 -18.63978 -18.32390 -17.91098 -17.51391 -16.72936 -16.50579 -16.06822 -15.70726 -15.50884 -15.27433 -15.15002 -14.97735 -14.71897 -14.59654 -14.46465 -14.11281 -13.95941 -13.76940 -13.39278 -13.35105 -13.06759 -13.01850 -12.91335 -12.82285 -12.64000 -12.56320 -12.47028 -12.44784 -12.16787 -12.08931 -11.89602 -11.84234 -11.72155 -11.53359 -11.19867 -11.10734 -10.97620 -10.93383 -10.89165 -9.99884 -9.30838 -8.55784 -8.54919 -7.19732 0.06641 0.43257 0.90426 1.29454 1.35822 1.37302 1.43159 1.53209 1.98653 2.12287 2.27136 2.59078 3.41194 3.69719 3.79861 3.89664 3.99288 4.01474 4.23755 4.27389 4.29464 4.34276 4.39038 4.45692 4.56111 4.64332 4.65803 4.68337 4.79441 4.86857 4.90709 4.94374 5.02586 5.04450 5.07434 5.11238 5.16528 5.18303 5.21694 5.24910 5.31835 5.35230 5.45583 5.53524 5.59063 5.65177 5.71380 5.71565 5.77555 5.85935 6.56243 6.60311 6.92481 8.04248 8.35529 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.003022 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.425639 B = 9261.838010 C =11257.689542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.359 6.359 3 C 0.552 3.448 4 O -0.528 6.528 5 C -0.253 4.253 6 C 0.105 3.895 7 N -0.647 5.647 8 C 0.512 3.488 9 O -0.581 6.581 10 C -0.550 4.550 11 H 0.090 0.910 12 C 0.036 3.964 13 N -0.783 5.783 14 Si 1.003 2.997 15 H -0.257 1.257 16 H -0.266 1.266 17 H -0.251 1.251 18 S 0.214 5.786 19 C -0.262 4.262 20 C -0.053 4.053 21 C -0.056 4.056 22 C -0.107 4.107 23 C -0.064 4.064 24 H 0.071 0.929 25 C -0.058 4.058 26 C -0.145 4.145 27 C -0.141 4.141 28 C -0.148 4.148 29 C -0.031 4.031 30 H 0.135 0.865 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.405 0.595 34 H 0.286 0.714 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.051 0.949 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.082 0.918 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.261 -2.990 -18.631 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.275 6.275 3 C 0.395 3.605 4 O -0.417 6.417 5 C -0.271 4.271 6 C -0.118 4.118 7 N -0.287 5.287 8 C 0.324 3.676 9 O -0.469 6.469 10 C -0.584 4.584 11 H 0.109 0.891 12 C -0.185 4.185 13 N -0.410 5.410 14 Si 0.821 3.179 15 H -0.181 1.181 16 H -0.191 1.191 17 H -0.175 1.175 18 S 0.476 5.524 19 C -0.379 4.379 20 C -0.063 4.063 21 C -0.095 4.095 22 C -0.144 4.144 23 C -0.084 4.084 24 H 0.090 0.910 25 C -0.058 4.058 26 C -0.202 4.202 27 C -0.198 4.198 28 C -0.205 4.205 29 C -0.070 4.070 30 H 0.153 0.847 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.240 0.760 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.100 0.900 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.146 -2.581 -17.658 17.882 hybrid contribution -2.317 0.050 0.668 2.412 sum -3.463 -2.531 -16.989 17.522 Atomic orbital electron populations 1.23656 0.74531 1.05982 1.02847 1.86747 1.25243 1.32068 1.83402 1.20553 0.88163 0.81365 0.70388 1.90810 1.67433 1.37006 1.46501 1.17882 0.90135 1.26438 0.92635 1.22675 0.99810 1.01049 0.88217 1.43193 1.10974 1.72253 1.02266 1.17495 0.85819 0.79231 0.85060 1.90582 1.15236 1.57221 1.83861 1.20356 0.96212 1.52007 0.89860 0.89139 1.26992 0.94405 0.90939 1.06143 1.70086 1.05035 1.31053 1.34790 0.84923 0.79300 0.79770 0.73889 1.18128 1.19079 1.17465 1.85433 0.98579 1.72343 0.96004 1.25606 0.97851 1.14597 0.99880 1.19084 0.91421 1.01858 0.93957 1.20617 0.97972 1.02028 0.88901 1.21664 0.94013 0.99957 0.98725 1.21160 0.94618 0.99953 0.92634 0.91046 1.20492 0.94881 0.95910 0.94550 1.21933 0.96530 0.99978 1.01797 1.21917 1.00820 1.01309 0.95745 1.22006 1.01821 0.94886 1.01745 1.20435 0.94078 1.02339 0.90104 0.84723 0.92082 0.91116 0.75979 0.90352 0.91944 0.89818 0.91882 0.88822 0.92676 0.91897 0.92955 0.91852 0.92040 0.92578 0.92984 0.91982 0.92269 0.89958 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.57 113.37 1.20 1.71 16 2 O -0.36 -11.67 10.58 -57.74 -0.61 -12.28 16 3 C 0.55 21.02 6.22 70.02 0.44 21.46 16 4 O -0.53 -21.76 16.91 19.48 0.33 -21.43 16 5 C -0.25 -10.27 5.73 -20.72 -0.12 -10.39 16 6 C 0.11 4.84 7.16 83.73 0.60 5.44 16 7 N -0.65 -31.58 5.31 -314.03 -1.67 -33.25 16 8 C 0.51 28.84 7.50 84.93 0.64 29.48 16 9 O -0.58 -35.81 12.33 -4.95 -0.06 -35.87 16 10 C -0.55 -29.68 9.28 23.42 0.22 -29.46 16 11 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 12 C 0.04 1.86 5.50 85.34 0.47 2.33 16 13 N -0.78 -44.01 11.71 21.86 0.26 -43.76 16 14 Si 1.00 37.96 29.56 68.60 2.03 39.98 16 15 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 16 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 17 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 18 S 0.21 9.30 20.31 -56.49 -1.15 8.16 16 19 C -0.26 -8.99 6.34 25.18 0.16 -8.83 16 20 C -0.05 -1.83 5.80 -19.68 -0.11 -1.95 16 21 C -0.06 -1.48 5.63 30.37 0.17 -1.31 16 22 C -0.11 -2.18 4.39 30.63 0.13 -2.05 16 23 C -0.06 -1.29 1.55 -10.70 -0.02 -1.30 16 24 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 25 C -0.06 -0.91 0.57 -52.18 -0.03 -0.94 16 26 C -0.15 -2.25 8.14 71.98 0.59 -1.66 16 27 C -0.14 -1.81 8.16 71.98 0.59 -1.23 16 28 C -0.15 -2.29 7.80 71.98 0.56 -1.73 16 29 C -0.03 -0.79 4.74 30.19 0.14 -0.64 16 30 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.40 17.98 8.12 -92.71 -0.75 17.22 16 34 H 0.29 14.37 8.29 -92.71 -0.77 13.60 16 35 H 0.06 1.72 7.97 -2.39 -0.02 1.70 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.06 1.37 7.00 -2.39 -0.02 1.35 16 38 H 0.09 1.47 5.97 -2.39 -0.01 1.45 16 39 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.05 0.88 6.68 -2.39 -0.02 0.87 16 42 H 0.06 0.76 6.23 -2.39 -0.01 0.75 16 43 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.05 0.90 6.23 -2.39 -0.01 0.88 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 0.91 6.68 -2.39 -0.02 0.90 16 48 H 0.08 2.01 5.97 -2.39 -0.01 2.00 16 49 H 0.08 1.88 7.05 -2.39 -0.02 1.86 16 Total: -1.00 -71.19 398.49 4.99 -66.20 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: 0.24 Total: 33.30 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 5.62 Total: -1.07 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -1.41 Total: -77.01 kcal Atomic # 8 Polarization: -69.24 SS G_CDS: -0.34 Total: -69.58 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.98 kcal Atomic # 16 Polarization: 9.30 SS G_CDS: -1.15 Total: 8.16 kcal Total: -71.19 4.99 -66.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017070494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.136 kcal (2) G-P(sol) polarization free energy of solvation -71.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds