Wall clock time and date at job start Tue Mar 31 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47420 * 2 1 4 4 C 1.38773 * 120.16029 * 269.05788 * 3 2 1 5 5 C 1.50693 * 119.06354 * 0.04039 * 4 3 2 6 6 N 1.31300 * 121.87283 * 180.02562 * 4 3 2 7 7 C 1.33837 * 121.69331 * 359.97438 * 6 4 3 8 8 C 1.40558 * 120.97893 * 179.97438 * 7 6 4 9 9 C 1.36123 * 119.76828 * 180.02562 * 8 7 6 10 10 C 1.39338 * 121.02081 * 359.95749 * 9 8 7 11 11 Br 1.89104 * 119.60725 * 180.02562 * 10 9 8 12 12 C 1.36350 * 120.78784 * 0.06164 * 10 9 8 13 13 C 1.40127 * 119.62351 * 359.95841 * 12 10 9 14 14 C 1.38691 * 120.15864 * 89.07774 * 3 2 1 15 15 S 1.76201 * 121.06176 * 0.02562 * 14 3 2 16 16 C 1.80992 * 100.00340 * 92.27120 * 15 14 3 17 17 C 1.50695 * 109.47378 * 175.58624 * 16 15 14 18 18 H 1.07998 * 120.00114 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99935 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00428 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47379 * 59.99118 * 21 19 17 23 23 H 1.48497 * 109.47593 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47029 * 299.99542 * 21 19 17 25 25 H 1.08998 * 109.46521 * 63.77199 * 1 2 3 26 26 H 1.09003 * 109.47116 * 183.77044 * 1 2 3 27 27 H 1.09001 * 109.46838 * 303.77466 * 1 2 3 28 28 H 1.09006 * 109.47288 * 240.00126 * 2 1 3 29 29 H 1.09000 * 109.47133 * 120.00729 * 2 1 3 30 30 H 1.09002 * 109.47510 * 269.97418 * 5 4 3 31 31 H 1.09001 * 109.47088 * 29.98471 * 5 4 3 32 32 H 1.09005 * 109.46997 * 149.97467 * 5 4 3 33 33 H 1.07998 * 120.11063 * 359.74747 * 8 7 6 34 34 H 1.08000 * 119.49076 * 179.97438 * 9 8 7 35 35 H 1.07998 * 120.18840 * 179.97438 * 12 10 9 36 36 H 1.09004 * 109.47277 * 295.58102 * 16 15 14 37 37 H 1.08997 * 109.47305 * 55.58023 * 16 15 14 38 38 H 0.96998 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2834 2.0715 -1.1997 5 6 2.0456 1.3377 -2.4943 6 7 2.7221 3.3084 -1.2389 7 6 2.9504 4.0093 -0.1218 8 6 3.4205 5.3326 -0.1813 9 6 3.6450 6.0225 0.9705 10 6 3.4150 5.4378 2.2142 11 35 3.7396 6.4332 3.7889 12 6 2.9595 4.1562 2.3093 13 6 2.7187 3.4182 1.1427 14 6 2.2465 2.0841 1.1990 15 16 1.9409 1.2924 2.7432 16 6 3.5856 0.6166 3.0810 17 6 3.5926 -0.0319 4.4412 18 1 2.6953 -0.0359 5.0422 19 6 4.7448 -0.6193 4.9191 20 7 5.8378 -0.6141 4.1875 21 14 4.7533 -1.4239 6.6048 22 1 3.7524 -2.5205 6.6351 23 1 6.1028 -1.9782 6.8821 24 1 4.4113 -0.4130 7.6375 25 1 -0.3632 0.4542 -0.9219 26 1 -0.3633 -1.0255 0.0676 27 1 -0.3633 0.5713 0.8542 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.9569 0.8180 -2.7902 31 1 1.2419 0.6139 -2.3592 32 1 1.7658 2.0507 -3.2699 33 1 3.6073 5.7987 -1.1374 34 1 4.0066 7.0389 0.9195 35 1 2.7849 3.7124 3.2783 36 1 3.8360 -0.1259 2.3232 37 1 4.3207 1.4211 3.0582 38 1 6.6483 -1.0276 4.5234 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017353878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:23 Heat of formation + Delta-G solvation = 34.490453 kcal Electronic energy + Delta-G solvation = -21838.606031 eV Core-core repulsion = 18624.503514 eV Total energy + Delta-G solvation = -3214.102517 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 365.014 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.81538 -37.78019 -34.61471 -33.26472 -32.92712 -31.91060 -30.20345 -29.07124 -28.66283 -27.31773 -24.54083 -23.41244 -22.47255 -22.09978 -21.49845 -18.09985 -17.02264 -16.79093 -16.29118 -15.33334 -14.92907 -14.86414 -14.62046 -14.10300 -13.85364 -13.66476 -13.23779 -13.19966 -12.78441 -12.59531 -12.47136 -12.32359 -12.14020 -11.95404 -11.79633 -11.61582 -11.13984 -10.96971 -10.91111 -10.80593 -10.62601 -10.32889 -10.24896 -10.20811 -9.68467 -9.39142 -9.11076 -8.69804 -8.42564 -7.99646 -6.95310 -6.27743 -4.34568 0.26125 0.78577 1.66287 1.88064 2.35908 2.75234 3.22762 3.26869 3.29836 3.62484 4.10462 4.16224 4.28009 4.62850 4.71735 4.90615 4.95884 5.07237 5.09217 5.21195 5.37577 5.42983 5.50274 5.57069 5.60290 5.73036 5.77886 5.87250 5.93895 6.08263 6.10240 6.16261 6.24428 6.40497 6.49855 6.56475 6.78171 6.93287 6.99068 7.63578 7.86321 7.93675 8.66613 9.29806 10.82893 Molecular weight = 365.01amu Principal moments of inertia in cm(-1) A = 0.006702 B = 0.005256 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4177.130986 B = 5325.695586 C = 8689.286863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 C -0.094 4.094 4 C 0.167 3.833 5 C -0.108 4.108 6 N -0.475 5.475 7 C 0.136 3.864 8 C -0.091 4.091 9 C -0.083 4.083 10 C -0.095 4.095 11 Br -0.050 7.050 12 C -0.043 4.043 13 C -0.078 4.078 14 C -0.034 4.034 15 S -0.174 6.174 16 C 0.083 3.917 17 C -0.520 4.520 18 H 0.068 0.932 19 C 0.070 3.930 20 N -0.888 5.888 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.273 1.273 25 H 0.048 0.952 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.157 0.843 36 H 0.040 0.960 37 H 0.038 0.962 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 10.209 -9.210 15.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.128 4.128 3 C -0.099 4.099 4 C 0.013 3.987 5 C -0.166 4.166 6 N -0.184 5.184 7 C 0.012 3.988 8 C -0.110 4.110 9 C -0.104 4.104 10 C -0.175 4.175 11 Br 0.035 6.965 12 C -0.064 4.064 13 C -0.084 4.084 14 C -0.153 4.153 15 S 0.061 5.939 16 C -0.063 4.063 17 C -0.559 4.559 18 H 0.086 0.914 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.733 3.267 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.198 1.198 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.174 0.826 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.890 10.937 -8.719 15.592 hybrid contribution 1.178 -0.804 0.578 1.538 sum -5.712 10.134 -8.141 14.199 Atomic orbital electron populations 1.21680 0.94192 1.02073 1.01749 1.20700 0.96607 0.91118 1.04339 1.21070 0.98745 0.97958 0.92131 1.21317 0.92445 0.89998 0.94935 1.20862 1.02979 0.99824 0.92912 1.67881 1.13090 1.07435 1.30004 1.18836 0.97606 0.94506 0.87815 1.20662 0.99564 0.92064 0.98720 1.20729 0.99054 1.00325 0.90320 1.21460 1.07692 0.96028 0.92300 1.96700 1.95087 1.71995 1.32669 1.21390 0.93592 0.91717 0.99731 1.18873 1.01073 0.94379 0.94033 1.22707 0.98419 0.94763 0.99379 1.85552 1.24914 1.67111 1.16359 1.21274 0.85769 0.98269 1.01028 1.20571 0.97714 1.37572 1.00046 0.91366 1.24947 0.94891 0.95571 0.98098 1.69943 1.01370 1.43651 1.37569 0.86413 0.77371 0.79721 0.83197 1.19816 1.20982 1.19776 0.93255 0.91985 0.92008 0.90713 0.88534 0.89983 0.89965 0.90367 0.84156 0.84615 0.82580 0.94151 0.94326 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.78 37.16 0.36 -1.34 16 2 C -0.09 -1.27 4.94 -27.89 -0.14 -1.40 16 3 C -0.09 -1.54 5.17 -104.26 -0.54 -2.08 16 4 C 0.17 2.51 6.77 -82.63 -0.56 1.95 16 5 C -0.11 -1.16 9.31 36.00 0.34 -0.83 16 6 N -0.47 -7.75 10.23 -7.34 -0.08 -7.83 16 7 C 0.14 2.28 6.60 -84.88 -0.56 1.72 16 8 C -0.09 -1.26 9.98 -39.47 -0.39 -1.66 16 9 C -0.08 -1.10 9.67 -39.93 -0.39 -1.48 16 10 C -0.10 -1.45 6.18 -39.85 -0.25 -1.70 16 11 Br -0.05 -0.69 33.66 -68.01 -2.29 -2.98 16 12 C -0.04 -0.76 9.13 -39.55 -0.36 -1.12 16 13 C -0.08 -1.41 5.75 -106.65 -0.61 -2.03 16 14 C -0.03 -0.63 5.60 -38.12 -0.21 -0.84 16 15 S -0.17 -3.55 18.67 -107.50 -2.01 -5.56 16 16 C 0.08 2.06 5.45 36.00 0.20 2.25 16 17 C -0.52 -13.93 9.13 -34.44 -0.31 -14.25 16 18 H 0.07 1.81 7.71 -52.49 -0.40 1.40 16 19 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 20 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 21 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H 0.05 0.52 7.39 -51.93 -0.38 0.14 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.88 6.61 -51.93 -0.34 0.54 16 29 H 0.10 1.60 6.91 -51.93 -0.36 1.25 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.74 5.77 -51.93 -0.30 0.44 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.16 2.91 6.95 -52.49 -0.36 2.54 16 36 H 0.04 1.05 8.14 -51.91 -0.42 0.63 16 37 H 0.04 1.03 8.14 -51.92 -0.42 0.61 16 38 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 350.24 15.07 5.28 5.28 Total: -1.00 -28.82 350.24 -11.58 -40.40 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.67 Total: 0.45 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -3.53 Total: -21.00 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.66 Total: -32.29 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.01 Total: -5.56 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -2.29 Total: -2.98 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.82 -11.58 -40.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017353878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.891 kcal (2) G-P(sol) polarization free energy of solvation -28.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds