Wall clock time and date at job start Tue Mar 31 2020 05:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47420 * 2 1 4 4 C 1.38773 * 120.16029 * 269.05788 * 3 2 1 5 5 C 1.50693 * 119.06354 * 0.04039 * 4 3 2 6 6 N 1.31300 * 121.87283 * 180.02562 * 4 3 2 7 7 C 1.33837 * 121.69331 * 359.97438 * 6 4 3 8 8 C 1.40558 * 120.97893 * 179.97438 * 7 6 4 9 9 C 1.36123 * 119.76828 * 180.02562 * 8 7 6 10 10 C 1.39338 * 121.02081 * 359.95749 * 9 8 7 11 11 Br 1.89104 * 119.60725 * 180.02562 * 10 9 8 12 12 C 1.36350 * 120.78784 * 0.06164 * 10 9 8 13 13 C 1.40127 * 119.62351 * 359.95841 * 12 10 9 14 14 C 1.38691 * 120.15864 * 89.07774 * 3 2 1 15 15 S 1.76201 * 121.06176 * 0.02562 * 14 3 2 16 16 C 1.80992 * 100.00340 * 92.27120 * 15 14 3 17 17 C 1.50695 * 109.47378 * 175.58624 * 16 15 14 18 18 H 1.07998 * 120.00114 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99935 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00428 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47379 * 59.99118 * 21 19 17 23 23 H 1.48497 * 109.47593 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47029 * 299.99542 * 21 19 17 25 25 H 1.08998 * 109.46521 * 63.77199 * 1 2 3 26 26 H 1.09003 * 109.47116 * 183.77044 * 1 2 3 27 27 H 1.09001 * 109.46838 * 303.77466 * 1 2 3 28 28 H 1.09006 * 109.47288 * 240.00126 * 2 1 3 29 29 H 1.09000 * 109.47133 * 120.00729 * 2 1 3 30 30 H 1.09002 * 109.47510 * 269.97418 * 5 4 3 31 31 H 1.09001 * 109.47088 * 29.98471 * 5 4 3 32 32 H 1.09005 * 109.46997 * 149.97467 * 5 4 3 33 33 H 1.07998 * 120.11063 * 359.74747 * 8 7 6 34 34 H 1.08000 * 119.49076 * 179.97438 * 9 8 7 35 35 H 1.07998 * 120.18840 * 179.97438 * 12 10 9 36 36 H 1.09004 * 109.47277 * 295.58102 * 16 15 14 37 37 H 1.08997 * 109.47305 * 55.58023 * 16 15 14 38 38 H 0.96998 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2834 2.0715 -1.1997 5 6 2.0456 1.3377 -2.4943 6 7 2.7221 3.3084 -1.2389 7 6 2.9504 4.0093 -0.1218 8 6 3.4205 5.3326 -0.1813 9 6 3.6450 6.0225 0.9705 10 6 3.4150 5.4378 2.2142 11 35 3.7396 6.4332 3.7889 12 6 2.9595 4.1562 2.3093 13 6 2.7187 3.4182 1.1427 14 6 2.2465 2.0841 1.1990 15 16 1.9409 1.2924 2.7432 16 6 3.5856 0.6166 3.0810 17 6 3.5926 -0.0319 4.4412 18 1 2.6953 -0.0359 5.0422 19 6 4.7448 -0.6193 4.9191 20 7 5.8378 -0.6141 4.1875 21 14 4.7533 -1.4239 6.6048 22 1 3.7524 -2.5205 6.6351 23 1 6.1028 -1.9782 6.8821 24 1 4.4113 -0.4130 7.6375 25 1 -0.3632 0.4542 -0.9219 26 1 -0.3633 -1.0255 0.0676 27 1 -0.3633 0.5713 0.8542 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.9569 0.8180 -2.7902 31 1 1.2419 0.6139 -2.3592 32 1 1.7658 2.0507 -3.2699 33 1 3.6073 5.7987 -1.1374 34 1 4.0066 7.0389 0.9195 35 1 2.7849 3.7124 3.2783 36 1 3.8360 -0.1259 2.3232 37 1 4.3207 1.4211 3.0582 38 1 6.6483 -1.0276 4.5234 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000017353878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:22 Heat of formation + Delta-G solvation = 21.097827 kcal Electronic energy + Delta-G solvation = -21839.186779 eV Core-core repulsion = 18624.503514 eV Total energy + Delta-G solvation = -3214.683265 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 365.014 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04192 -38.95846 -35.81625 -35.33840 -34.12135 -33.05872 -31.30028 -30.75950 -30.23648 -28.40324 -25.75488 -25.34205 -23.65959 -23.44243 -22.65929 -19.33801 -18.72834 -18.13259 -17.86417 -16.95407 -16.31109 -16.08634 -15.97856 -15.34030 -15.12341 -14.92299 -14.60110 -14.43528 -14.34179 -14.24319 -14.10610 -13.54193 -13.12638 -13.01607 -12.91328 -12.75549 -12.74593 -12.71445 -12.42056 -12.19535 -12.05704 -11.78378 -11.59289 -11.38556 -11.36013 -10.89462 -10.77257 -10.55716 -9.62169 -9.29152 -8.61842 -8.36004 -6.51373 -1.02666 -0.43743 0.45793 0.52900 0.89124 1.39269 1.41882 1.50253 1.55237 1.87998 2.34170 2.83182 2.98604 3.05288 3.43501 3.49937 3.71149 3.80013 3.96928 4.07414 4.21291 4.32476 4.46195 4.53917 4.64409 4.72173 4.76345 4.77830 4.82524 4.87224 4.94503 5.00655 5.03356 5.05661 5.12381 5.29409 5.36046 5.45633 5.51898 5.62406 5.79718 6.56005 6.68806 7.17809 8.75391 Molecular weight = 365.01amu Principal moments of inertia in cm(-1) A = 0.006702 B = 0.005256 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4177.130986 B = 5325.695586 C = 8689.286863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 C -0.088 4.088 4 C 0.160 3.840 5 C -0.106 4.106 6 N -0.475 5.475 7 C 0.115 3.885 8 C -0.082 4.082 9 C -0.078 4.078 10 C -0.090 4.090 11 Br -0.037 7.037 12 C -0.075 4.075 13 C -0.095 4.095 14 C -0.073 4.073 15 S -0.153 6.153 16 C 0.089 3.911 17 C -0.538 4.538 18 H 0.068 0.932 19 C 0.019 3.981 20 N -0.923 5.923 21 Si 0.974 3.026 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.266 1.266 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.039 0.961 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.172 0.828 34 H 0.172 0.828 35 H 0.134 0.866 36 H 0.015 0.985 37 H 0.005 0.995 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.084 10.786 -10.740 16.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.128 4.128 3 C -0.093 4.093 4 C 0.006 3.994 5 C -0.163 4.163 6 N -0.184 5.184 7 C -0.008 4.008 8 C -0.101 4.101 9 C -0.099 4.099 10 C -0.170 4.170 11 Br 0.049 6.951 12 C -0.096 4.096 13 C -0.101 4.101 14 C -0.192 4.192 15 S 0.081 5.919 16 C -0.058 4.058 17 C -0.576 4.576 18 H 0.086 0.914 19 C -0.182 4.182 20 N -0.562 5.562 21 Si 0.797 3.203 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.191 1.191 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.058 0.942 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.189 0.811 34 H 0.190 0.810 35 H 0.152 0.848 36 H 0.034 0.966 37 H 0.023 0.977 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.573 11.527 -10.243 17.180 hybrid contribution 1.370 -0.879 0.935 1.877 sum -6.203 10.648 -9.308 15.443 Atomic orbital electron populations 1.21653 0.92356 1.03117 1.01948 1.20779 0.98087 0.89706 1.04249 1.21459 0.97098 0.98790 0.91918 1.22001 0.91423 0.89849 0.96117 1.21012 1.04333 1.00203 0.90704 1.67988 1.12941 1.07920 1.29546 1.19235 0.98366 0.95864 0.87326 1.21041 0.97954 0.90811 1.00305 1.21103 0.98039 1.01701 0.89025 1.21704 1.06113 0.95309 0.93836 1.96703 1.94893 1.71130 1.32392 1.21242 0.96448 0.93121 0.98796 1.19036 1.01608 0.94367 0.95058 1.22729 1.01904 0.95704 0.98847 1.85152 1.20871 1.67003 1.18865 1.20843 0.88524 0.96559 0.99865 1.20904 0.97975 1.37872 1.00893 0.91425 1.25894 0.94354 0.95906 1.02076 1.70066 1.02038 1.44532 1.39526 0.85360 0.77785 0.78934 0.78224 1.18702 1.20277 1.19105 0.90962 0.90198 0.94191 0.87761 0.91617 0.88688 0.87902 0.88946 0.81063 0.81010 0.84838 0.96648 0.97689 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 9.78 71.98 0.70 -2.35 16 2 C -0.09 -2.50 4.94 29.85 0.15 -2.36 16 3 C -0.09 -2.87 5.17 -19.63 -0.10 -2.98 16 4 C 0.16 4.61 6.77 42.76 0.29 4.90 16 5 C -0.11 -1.93 9.31 71.23 0.66 -1.27 16 6 N -0.47 -14.83 10.23 -177.14 -1.81 -16.64 16 7 C 0.12 3.80 6.60 40.21 0.27 4.07 16 8 C -0.08 -2.12 9.98 22.34 0.22 -1.90 16 9 C -0.08 -1.91 9.67 22.04 0.21 -1.70 16 10 C -0.09 -2.73 6.18 22.09 0.14 -2.60 16 11 Br -0.04 -1.00 33.66 -20.37 -0.69 -1.69 16 12 C -0.07 -2.75 9.13 22.29 0.20 -2.54 16 13 C -0.09 -3.58 5.75 -21.18 -0.12 -3.70 16 14 C -0.07 -2.84 5.60 23.22 0.13 -2.71 16 15 S -0.15 -6.67 18.67 -56.49 -1.05 -7.72 16 16 C 0.09 4.75 5.45 71.23 0.39 5.14 16 17 C -0.54 -30.12 9.13 25.60 0.23 -29.88 16 18 H 0.07 3.70 7.71 -2.91 -0.02 3.68 16 19 C 0.02 1.06 5.46 84.65 0.46 1.53 16 20 N -0.92 -54.26 13.29 21.45 0.28 -53.97 16 21 Si 0.97 43.03 29.54 68.60 2.03 45.05 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 25 H 0.07 1.32 7.39 -2.39 -0.02 1.30 16 26 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.10 2.24 6.61 -2.38 -0.02 2.23 16 29 H 0.07 2.26 6.91 -2.39 -0.02 2.25 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.10 1.45 5.77 -2.39 -0.01 1.44 16 32 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 34 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 35 H 0.13 5.40 6.95 -2.91 -0.02 5.38 16 36 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.00 0.28 8.14 -2.40 -0.02 0.26 16 38 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -65.97 350.24 3.68 -62.30 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 1.08 Total: 11.02 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 3.84 Total: -38.35 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -1.53 Total: -70.61 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: -6.67 SS G_CDS: -1.05 Total: -7.72 kcal Atomic # 35 Polarization: -1.00 SS G_CDS: -0.69 Total: -1.69 kcal Total: -65.97 3.68 -62.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017353878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.395 kcal (2) G-P(sol) polarization free energy of solvation -65.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds