Wall clock time and date at job start Tue Mar 31 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86795 * 120.00331 * 2 1 4 4 H 1.48495 * 109.47436 * 270.00191 * 3 2 1 5 5 H 1.48502 * 109.47145 * 29.99962 * 3 2 1 6 6 H 1.48498 * 109.47294 * 149.99471 * 3 2 1 7 7 C 1.38688 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99816 * 0.02562 * 7 2 1 9 9 O 1.34776 * 120.00096 * 180.02562 * 7 2 1 10 10 C 1.35576 * 117.00008 * 174.89273 * 9 7 2 11 11 C 1.39193 * 119.89084 * 5.65419 * 10 9 7 12 12 C 1.37106 * 120.11250 * 179.97438 * 11 10 9 13 13 C 1.40114 * 119.88255 * 0.02562 * 12 11 10 14 14 C 1.46771 * 120.10376 * 179.97438 * 13 12 11 15 15 C 1.35816 * 119.99480 * 141.78837 * 14 13 12 16 16 S 1.77485 * 127.96444 * 172.06025 * 15 14 13 17 17 C 1.77219 * 94.57325 * 179.97438 * 16 15 14 18 18 S 1.71202 * 126.55728 * 179.97438 * 17 16 15 19 19 N 1.33792 * 106.89540 * 359.76516 * 17 16 15 20 20 C 1.46498 * 120.24637 * 180.23662 * 19 17 16 21 21 C 1.50703 * 109.47131 * 270.22286 * 20 19 17 22 22 O 1.20828 * 119.99650 * 359.97438 * 21 20 19 23 23 O 1.34228 * 119.99989 * 180.02562 * 21 20 19 24 24 C 1.32262 * 119.51857 * 0.45136 * 19 17 16 25 25 O 1.21716 * 122.52585 * 179.78357 * 24 19 17 26 26 C 1.40108 * 119.78556 * 0.27215 * 13 12 11 27 27 C 1.37106 * 119.88940 * 359.44555 * 26 13 12 28 28 H 0.97008 * 119.99829 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.94263 * 359.95717 * 11 10 9 30 30 H 1.08000 * 120.05476 * 180.02562 * 12 11 10 31 31 H 1.07997 * 120.00201 * 321.79064 * 14 13 12 32 32 H 1.09005 * 109.46540 * 30.21455 * 20 19 17 33 33 H 1.08993 * 109.47767 * 150.21699 * 20 19 17 34 34 H 0.96703 * 116.99972 * 179.97438 * 23 21 20 35 35 H 1.07999 * 120.05749 * 179.70678 * 26 13 12 36 36 H 1.07994 * 119.94515 * 180.27300 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0086 -1.2011 -0.0005 8 1 1.4686 -2.1364 -0.0014 9 8 3.3564 -1.2012 0.0000 10 6 3.9718 -2.4045 0.1070 11 6 3.2167 -3.5736 0.0910 12 6 3.8343 -4.7930 0.1983 13 6 5.2281 -4.8607 0.3248 14 6 5.8943 -6.1634 0.4406 15 6 7.0862 -6.3736 -0.1758 16 16 8.1613 -7.7776 -0.0239 17 6 9.3778 -7.1463 -1.1473 18 16 10.8383 -7.9132 -1.6054 19 7 8.9346 -5.9577 -1.5726 20 6 9.7230 -5.1747 -2.5274 21 6 10.6700 -4.2738 -1.7774 22 8 10.6845 -4.2843 -0.5692 23 8 11.4967 -3.4589 -2.4515 24 6 7.7815 -5.4927 -1.1215 25 8 7.3288 -4.4175 -1.4684 26 6 5.9832 -3.6807 0.3466 27 6 5.3567 -2.4665 0.2328 28 1 -0.4850 0.8401 -0.0004 29 1 2.1423 -3.5202 -0.0058 30 1 3.2476 -5.6996 0.1854 31 1 5.4368 -6.9547 1.0158 32 1 10.2928 -5.8488 -3.1670 33 1 9.0551 -4.5699 -3.1406 34 1 12.0856 -2.8993 -1.9269 35 1 7.0573 -3.7276 0.4486 36 1 5.9382 -1.5566 0.2451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000017473631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:17 Heat of formation + Delta-G solvation = -46.581646 kcal Electronic energy + Delta-G solvation = -26924.548607 eV Core-core repulsion = 22787.568837 eV Total energy + Delta-G solvation = -4136.979770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 365.027 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.11311 -40.26686 -39.53855 -37.75828 -36.88889 -36.42802 -33.83923 -32.73630 -30.96604 -30.64863 -28.78106 -27.10375 -25.85900 -24.49571 -22.44494 -22.22884 -21.31256 -19.99173 -19.22454 -18.75566 -18.26267 -18.09297 -17.54857 -17.24977 -16.29528 -16.17339 -15.83952 -15.61257 -15.31653 -14.74348 -14.50397 -14.30280 -14.06796 -13.69026 -13.51284 -13.14802 -13.11604 -12.71803 -12.66157 -12.50929 -12.34219 -11.93795 -11.90769 -11.67396 -11.49713 -11.31394 -11.10241 -10.99915 -10.78964 -10.39884 -10.30139 -9.73561 -9.38981 -9.17343 -8.54048 -8.31253 -8.21809 -7.37277 -6.79196 -4.39049 -0.65987 0.34508 0.59505 1.16262 1.37964 1.74871 1.84087 1.99497 2.05012 2.43676 2.79391 3.03020 3.05956 3.18916 3.70338 3.95054 4.20285 4.41571 4.45995 4.54623 4.64341 4.77771 4.79153 4.93422 5.20293 5.26450 5.45941 5.55212 5.83038 5.98443 6.05541 6.09188 6.25087 6.51155 6.75767 6.90154 6.94467 7.07591 7.26361 7.41580 7.45684 7.65982 8.52654 9.12628 10.25742 Molecular weight = 365.03amu Principal moments of inertia in cm(-1) A = 0.015780 B = 0.002524 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.012211 B =11090.738837 C =12526.494014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.256 1.256 7 C -0.387 4.387 8 H 0.114 0.886 9 O -0.190 6.190 10 C 0.186 3.814 11 C -0.238 4.238 12 C -0.018 4.018 13 C -0.222 4.222 14 C 0.150 3.850 15 C -0.327 4.327 16 S 0.127 5.873 17 C 0.278 3.722 18 S -0.416 6.416 19 N -0.500 5.500 20 C 0.097 3.903 21 C 0.478 3.522 22 O -0.501 6.501 23 O -0.506 6.506 24 C 0.543 3.457 25 O -0.443 6.443 26 C 0.015 3.985 27 C -0.204 4.204 28 H 0.286 0.714 29 H 0.139 0.861 30 H 0.119 0.881 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.418 0.582 35 H 0.115 0.885 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.663 -11.242 -2.300 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.180 1.180 7 C -0.461 4.461 8 H 0.132 0.868 9 O -0.091 6.091 10 C 0.130 3.870 11 C -0.257 4.257 12 C -0.037 4.037 13 C -0.226 4.226 14 C 0.125 3.875 15 C -0.444 4.444 16 S 0.369 5.631 17 C -0.074 4.074 18 S -0.282 6.282 19 N -0.220 5.220 20 C -0.029 4.029 21 C 0.317 3.683 22 O -0.387 6.387 23 O -0.318 6.318 24 C 0.332 3.668 25 O -0.315 6.315 26 C -0.004 4.004 27 C -0.223 4.223 28 H 0.097 0.903 29 H 0.157 0.843 30 H 0.137 0.863 31 H 0.164 0.836 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.278 0.722 35 H 0.133 0.867 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.833 -12.010 -2.052 19.195 hybrid contribution -0.115 2.590 -0.184 2.600 sum 14.718 -9.419 -2.236 17.617 Atomic orbital electron populations 1.69616 1.05783 1.29428 1.44173 1.24592 0.95144 0.99355 0.94894 0.86137 0.80451 0.80787 0.79457 1.19407 1.20274 1.18011 1.20975 0.76531 0.97141 1.51500 0.86844 1.83502 1.23141 1.26685 1.75794 1.19427 0.91724 0.85155 0.90718 1.21029 1.01359 0.91569 1.11742 1.20796 0.92139 0.97248 0.93477 1.18277 0.93507 0.90975 1.19838 1.22054 0.86971 0.95099 0.83411 1.23421 1.05618 1.01455 1.13892 1.85828 1.10903 1.20797 1.45587 1.28394 1.00396 0.87525 0.91105 1.92966 1.08089 1.63091 1.64047 1.44949 1.20080 1.16926 1.40065 1.21400 0.94890 0.95689 0.90897 1.23099 0.79566 0.78901 0.86747 1.90789 1.66964 1.65577 1.15402 1.84443 1.50106 1.52135 1.45148 1.18059 0.79563 0.87017 0.82203 1.91018 1.64245 1.19357 1.56910 1.20653 0.97960 0.90761 0.91041 1.19962 0.91679 0.98180 1.12495 0.90306 0.84300 0.86307 0.83596 0.82862 0.83398 0.72220 0.86743 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.53 13.96 55.48 0.77 -21.76 16 2 C 0.07 1.72 5.49 -17.52 -0.10 1.62 16 3 Si 0.91 19.83 28.62 -169.99 -4.86 14.97 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16 7 C -0.39 -9.86 9.94 30.90 0.31 -9.55 16 8 H 0.11 2.91 5.41 -52.48 -0.28 2.63 16 9 O -0.19 -4.57 8.57 0.74 0.01 -4.56 16 10 C 0.19 3.91 6.66 -38.87 -0.26 3.65 16 11 C -0.24 -4.48 9.12 -39.64 -0.36 -4.85 16 12 C -0.02 -0.27 9.77 -39.29 -0.38 -0.65 16 13 C -0.22 -3.29 5.36 -105.04 -0.56 -3.86 16 14 C 0.15 1.70 9.87 -37.00 -0.37 1.33 16 15 C -0.33 -3.94 6.32 -37.00 -0.23 -4.17 16 16 S 0.13 1.35 23.18 -107.50 -2.49 -1.14 16 17 C 0.28 3.43 7.58 53.62 0.41 3.84 16 18 S -0.42 -5.59 29.73 -107.50 -3.20 -8.79 16 19 N -0.50 -6.11 1.97 -118.93 -0.23 -6.34 16 20 C 0.10 0.97 5.69 -5.19 -0.03 0.94 16 21 C 0.48 5.35 8.39 36.01 0.30 5.65 16 22 O -0.50 -7.38 17.19 -18.75 -0.32 -7.70 16 23 O -0.51 -4.07 13.42 -39.25 -0.53 -4.60 16 24 C 0.54 7.43 6.96 -13.92 -0.10 7.33 16 25 O -0.44 -7.04 12.48 5.17 0.06 -6.98 16 26 C 0.01 0.25 6.90 -39.29 -0.27 -0.02 16 27 C -0.20 -3.85 9.95 -39.64 -0.39 -4.24 16 28 H 0.29 6.92 8.31 -40.82 -0.34 6.59 16 29 H 0.14 2.71 5.62 -52.49 -0.29 2.42 16 30 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 32 H 0.15 1.25 7.09 -51.93 -0.37 0.88 16 33 H 0.15 1.26 7.50 -51.93 -0.39 0.87 16 34 H 0.42 1.72 9.10 45.56 0.41 2.14 16 35 H 0.11 1.88 6.24 -52.49 -0.33 1.55 16 36 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -31.01 351.90 -9.18 -40.18 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -1.65 Total: 4.39 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -2.04 Total: -2.99 kcal Atomic # 7 Polarization: -28.64 SS G_CDS: 0.54 Total: -28.10 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.78 Total: -23.84 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.86 Total: 14.97 kcal Atomic # 16 Polarization: -4.24 SS G_CDS: -5.69 Total: -9.92 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.01 -9.18 -40.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017473631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.397 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds