Wall clock time and date at job start Tue Mar 31 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86795 * 120.00331 * 2 1 4 4 H 1.48495 * 109.47436 * 270.00191 * 3 2 1 5 5 H 1.48502 * 109.47145 * 29.99962 * 3 2 1 6 6 H 1.48498 * 109.47294 * 149.99471 * 3 2 1 7 7 C 1.38688 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99816 * 0.02562 * 7 2 1 9 9 O 1.34776 * 120.00096 * 180.02562 * 7 2 1 10 10 C 1.35576 * 117.00008 * 174.89273 * 9 7 2 11 11 C 1.39193 * 119.89084 * 5.65419 * 10 9 7 12 12 C 1.37106 * 120.11250 * 179.97438 * 11 10 9 13 13 C 1.40114 * 119.88255 * 0.02562 * 12 11 10 14 14 C 1.46771 * 120.10376 * 179.97438 * 13 12 11 15 15 C 1.35816 * 119.99480 * 141.78837 * 14 13 12 16 16 S 1.77485 * 127.96444 * 172.06025 * 15 14 13 17 17 C 1.77219 * 94.57325 * 179.97438 * 16 15 14 18 18 S 1.71202 * 126.55728 * 179.97438 * 17 16 15 19 19 N 1.33792 * 106.89540 * 359.76516 * 17 16 15 20 20 C 1.46498 * 120.24637 * 180.23662 * 19 17 16 21 21 C 1.50703 * 109.47131 * 270.22286 * 20 19 17 22 22 O 1.20828 * 119.99650 * 359.97438 * 21 20 19 23 23 O 1.34228 * 119.99989 * 180.02562 * 21 20 19 24 24 C 1.32262 * 119.51857 * 0.45136 * 19 17 16 25 25 O 1.21716 * 122.52585 * 179.78357 * 24 19 17 26 26 C 1.40108 * 119.78556 * 0.27215 * 13 12 11 27 27 C 1.37106 * 119.88940 * 359.44555 * 26 13 12 28 28 H 0.97008 * 119.99829 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.94263 * 359.95717 * 11 10 9 30 30 H 1.08000 * 120.05476 * 180.02562 * 12 11 10 31 31 H 1.07997 * 120.00201 * 321.79064 * 14 13 12 32 32 H 1.09005 * 109.46540 * 30.21455 * 20 19 17 33 33 H 1.08993 * 109.47767 * 150.21699 * 20 19 17 34 34 H 0.96703 * 116.99972 * 179.97438 * 23 21 20 35 35 H 1.07999 * 120.05749 * 179.70678 * 26 13 12 36 36 H 1.07994 * 119.94515 * 180.27300 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0086 -1.2011 -0.0005 8 1 1.4686 -2.1364 -0.0014 9 8 3.3564 -1.2012 0.0000 10 6 3.9718 -2.4045 0.1070 11 6 3.2167 -3.5736 0.0910 12 6 3.8343 -4.7930 0.1983 13 6 5.2281 -4.8607 0.3248 14 6 5.8943 -6.1634 0.4406 15 6 7.0862 -6.3736 -0.1758 16 16 8.1613 -7.7776 -0.0239 17 6 9.3778 -7.1463 -1.1473 18 16 10.8383 -7.9132 -1.6054 19 7 8.9346 -5.9577 -1.5726 20 6 9.7230 -5.1747 -2.5274 21 6 10.6700 -4.2738 -1.7774 22 8 10.6845 -4.2843 -0.5692 23 8 11.4967 -3.4589 -2.4515 24 6 7.7815 -5.4927 -1.1215 25 8 7.3288 -4.4175 -1.4684 26 6 5.9832 -3.6807 0.3466 27 6 5.3567 -2.4665 0.2328 28 1 -0.4850 0.8401 -0.0004 29 1 2.1423 -3.5202 -0.0058 30 1 3.2476 -5.6996 0.1854 31 1 5.4368 -6.9547 1.0158 32 1 10.2928 -5.8488 -3.1670 33 1 9.0551 -4.5699 -3.1406 34 1 12.0856 -2.8993 -1.9269 35 1 7.0573 -3.7276 0.4486 36 1 5.9382 -1.5566 0.2451 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000017473631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:16 Heat of formation + Delta-G solvation = -65.862422 kcal Electronic energy + Delta-G solvation = -26925.384684 eV Core-core repulsion = 22787.568837 eV Total energy + Delta-G solvation = -4137.815847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 365.027 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.13225 -41.24580 -40.96708 -39.03011 -38.15973 -37.28459 -35.08852 -34.43175 -32.15420 -31.86498 -30.04654 -28.22650 -27.42340 -25.62549 -23.83079 -23.40826 -22.40272 -21.15183 -20.27434 -19.87861 -19.59842 -19.40529 -18.78648 -18.27729 -17.22881 -17.16399 -16.96038 -16.80170 -16.62959 -16.01916 -15.96351 -15.81476 -15.50068 -14.91670 -14.55361 -14.47664 -14.24134 -14.09349 -13.92037 -13.72010 -13.56350 -13.18048 -12.93323 -12.78033 -12.76691 -12.57999 -12.56652 -12.23159 -12.03196 -11.87691 -11.47311 -11.36123 -10.97561 -10.39079 -9.92917 -9.47825 -9.26953 -8.67812 -8.58901 -6.29702 -1.68897 -0.63904 -0.43876 0.15884 0.35980 0.56705 0.69232 0.88267 0.95657 1.29275 1.30774 1.39531 1.47293 1.94251 2.21359 2.67738 2.68916 2.90670 3.04715 3.61485 3.67675 3.71454 3.90773 3.93628 3.96312 4.12300 4.30132 4.34899 4.49187 4.66373 4.81033 5.02175 5.13120 5.22854 5.34446 5.46369 5.51915 5.68980 5.76222 5.98154 6.06338 6.69073 6.74248 7.44533 8.51016 Molecular weight = 365.03amu Principal moments of inertia in cm(-1) A = 0.015780 B = 0.002524 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.012211 B =11090.738837 C =12526.494014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.019 3.981 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.402 4.402 8 H 0.095 0.905 9 O -0.231 6.231 10 C 0.158 3.842 11 C -0.251 4.251 12 C -0.007 4.007 13 C -0.199 4.199 14 C 0.169 3.831 15 C -0.327 4.327 16 S 0.203 5.797 17 C 0.270 3.730 18 S -0.445 6.445 19 N -0.501 5.501 20 C 0.091 3.909 21 C 0.481 3.519 22 O -0.541 6.541 23 O -0.496 6.496 24 C 0.538 3.462 25 O -0.468 6.468 26 C 0.013 3.987 27 C -0.212 4.212 28 H 0.288 0.712 29 H 0.124 0.876 30 H 0.167 0.833 31 H 0.204 0.796 32 H 0.172 0.828 33 H 0.162 0.838 34 H 0.435 0.565 35 H 0.121 0.879 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.222 -14.825 -2.035 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.182 4.182 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.478 4.478 8 H 0.112 0.888 9 O -0.137 6.137 10 C 0.106 3.894 11 C -0.270 4.270 12 C -0.026 4.026 13 C -0.202 4.202 14 C 0.143 3.857 15 C -0.444 4.444 16 S 0.445 5.555 17 C -0.083 4.083 18 S -0.311 6.311 19 N -0.221 5.221 20 C -0.034 4.034 21 C 0.322 3.678 22 O -0.432 6.432 23 O -0.310 6.310 24 C 0.327 3.673 25 O -0.343 6.343 26 C -0.006 4.006 27 C -0.231 4.231 28 H 0.098 0.902 29 H 0.142 0.858 30 H 0.184 0.816 31 H 0.220 0.780 32 H 0.189 0.811 33 H 0.180 0.820 34 H 0.298 0.702 35 H 0.139 0.861 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 17.479 -15.641 -1.804 23.525 hybrid contribution -0.304 3.061 -0.302 3.091 sum 17.175 -12.580 -2.107 21.394 Atomic orbital electron populations 1.69686 1.06777 1.29924 1.48414 1.25228 0.95815 1.01976 0.95176 0.85326 0.78920 0.77889 0.79343 1.19155 1.19016 1.18867 1.20828 0.77554 0.96622 1.52750 0.88805 1.83475 1.21949 1.27923 1.80315 1.19909 0.92676 0.85400 0.91381 1.21137 1.00876 0.92622 1.12386 1.21201 0.92619 0.97409 0.91332 1.18665 0.93485 0.92222 1.15868 1.22471 0.85995 0.94353 0.82836 1.23759 1.05633 1.02156 1.12860 1.85741 1.08331 1.17955 1.43490 1.28565 1.00685 0.87559 0.91460 1.93095 1.09384 1.63472 1.65187 1.44957 1.19909 1.17055 1.40166 1.21677 0.95115 0.96035 0.90613 1.23291 0.79512 0.78778 0.86223 1.90771 1.68364 1.67020 1.17012 1.84413 1.49796 1.51731 1.45013 1.18453 0.79813 0.86851 0.82162 1.91029 1.64994 1.20498 1.57740 1.20814 0.98385 0.90752 0.90630 1.20118 0.90968 0.99345 1.12713 0.90234 0.85829 0.81602 0.77966 0.81094 0.82034 0.70167 0.86075 0.86370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.20 13.96 21.62 0.30 -50.90 16 2 C 0.02 1.02 5.49 84.85 0.47 1.49 16 3 Si 0.96 43.28 28.62 68.60 1.96 45.24 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.40 -22.06 9.94 67.93 0.68 -21.38 16 8 H 0.09 5.26 5.41 -2.91 -0.02 5.25 16 9 O -0.23 -11.86 8.57 -20.28 -0.17 -12.03 16 10 C 0.16 6.88 6.66 22.73 0.15 7.03 16 11 C -0.25 -9.53 9.12 22.23 0.20 -9.33 16 12 C -0.01 -0.20 9.77 22.46 0.22 0.02 16 13 C -0.20 -5.06 5.36 -20.14 -0.11 -5.17 16 14 C 0.17 2.71 9.87 23.94 0.24 2.95 16 15 C -0.33 -6.11 6.32 23.94 0.15 -5.96 16 16 S 0.20 3.23 23.18 -56.49 -1.31 1.92 16 17 C 0.27 5.70 7.58 129.94 0.98 6.68 16 18 S -0.45 -10.85 29.73 -56.49 -1.68 -12.52 16 19 N -0.50 -10.66 1.97 -649.77 -1.28 -11.93 16 20 C 0.09 1.59 5.69 85.63 0.49 2.08 16 21 C 0.48 9.85 8.39 71.24 0.60 10.45 16 22 O -0.54 -15.10 17.19 21.96 0.38 -14.72 16 23 O -0.50 -6.95 13.42 -51.39 -0.69 -7.64 16 24 C 0.54 12.78 6.96 86.86 0.60 13.39 16 25 O -0.47 -13.69 12.48 -4.40 -0.05 -13.74 16 26 C 0.01 0.40 6.90 22.46 0.16 0.55 16 27 C -0.21 -8.06 9.95 22.23 0.22 -7.84 16 28 H 0.29 14.87 8.31 -92.70 -0.77 14.10 16 29 H 0.12 5.09 5.62 -2.91 -0.02 5.07 16 30 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.20 1.21 8.06 -2.91 -0.02 1.18 16 32 H 0.17 2.37 7.09 -2.38 -0.02 2.35 16 33 H 0.16 2.39 7.50 -2.39 -0.02 2.37 16 34 H 0.44 2.73 9.10 -74.06 -0.67 2.05 16 35 H 0.12 3.68 6.24 -2.91 -0.02 3.66 16 36 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -73.67 351.90 3.02 -70.65 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.52 Total: 10.73 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 5.05 Total: -5.04 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -0.98 Total: -62.83 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -0.54 Total: -48.14 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.96 Total: 45.24 kcal Atomic # 16 Polarization: -7.62 SS G_CDS: -2.99 Total: -10.61 kcal Total: -73.67 3.02 -70.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000017473631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.789 kcal (2) G-P(sol) polarization free energy of solvation -73.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds