Wall clock time and date at job start Tue Mar 31 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86795 * 120.00311 * 2 1 4 4 H 1.48507 * 109.46982 * 274.75582 * 3 2 1 5 5 H 1.48496 * 109.47305 * 34.75183 * 3 2 1 6 6 H 1.48496 * 109.47282 * 154.75946 * 3 2 1 7 7 C 1.38822 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00305 * 197.55170 * 7 2 1 9 9 N 1.36937 * 119.99729 * 17.55506 * 7 2 1 10 10 C 1.47209 * 121.37919 * 27.42521 * 9 7 2 11 11 C 1.53119 * 111.02849 * 244.49327 * 10 9 7 12 12 N 1.46985 * 109.54065 * 316.07844 * 11 10 9 13 13 C 1.36573 * 129.14770 * 194.72589 * 12 11 10 14 14 C 1.39282 * 131.76928 * 4.08437 * 13 12 11 15 15 C 1.38336 * 117.20737 * 180.82895 * 14 13 12 16 16 C 1.38526 * 122.15025 * 359.47516 * 15 14 13 17 17 C 1.50700 * 118.94592 * 180.10811 * 16 15 14 18 18 C 1.53006 * 109.47181 * 60.00499 * 17 16 15 19 19 C 1.52998 * 109.47116 * 179.97438 * 18 17 16 20 20 C 1.53004 * 109.47138 * 59.99637 * 19 18 17 21 21 C 1.52997 * 109.47165 * 299.99838 * 20 19 18 22 22 C 1.52995 * 109.47444 * 300.00086 * 17 16 15 23 23 C 1.37182 * 122.10398 * 0.08698 * 16 15 14 24 24 C 1.39914 * 117.21416 * 0.02562 * 23 16 15 25 25 C 1.43685 * 133.10825 * 180.47093 * 24 23 16 26 26 C 1.34853 * 106.38251 * 179.20003 * 25 24 23 27 27 C 1.47692 * 121.38004 * 207.41840 * 9 7 2 28 28 H 1.08997 * 110.76613 * 253.25973 * 27 9 7 29 29 C 1.51869 * 111.30620 * 17.58741 * 27 9 7 30 30 C 1.51104 * 115.77185 * 154.82332 * 29 27 9 31 31 C 1.50343 * 134.92965 * 357.72989 * 25 24 23 32 32 H 0.97003 * 119.99693 * 0.02562 * 1 2 3 33 33 H 1.09006 * 109.17015 * 124.09707 * 10 9 7 34 34 H 1.09003 * 109.16994 * 4.89629 * 10 9 7 35 35 H 1.08995 * 109.46159 * 196.05598 * 11 10 9 36 36 H 1.09003 * 109.44633 * 76.08823 * 11 10 9 37 37 H 1.07994 * 121.39632 * 0.59776 * 14 13 12 38 38 H 1.08002 * 118.92383 * 179.75534 * 15 14 13 39 39 H 1.09000 * 109.47012 * 179.97438 * 17 16 15 40 40 H 1.09000 * 109.46605 * 299.99584 * 18 17 16 41 41 H 1.08998 * 109.46961 * 59.99633 * 18 17 16 42 42 H 1.09000 * 109.47344 * 299.99499 * 19 18 17 43 43 H 1.09001 * 109.47051 * 179.97438 * 19 18 17 44 44 H 1.08997 * 109.47283 * 179.97438 * 20 19 18 45 45 H 1.09007 * 109.46697 * 60.00247 * 20 19 18 46 46 H 1.08993 * 109.47266 * 300.00254 * 21 20 19 47 47 H 1.08998 * 109.46712 * 179.97438 * 21 20 19 48 48 H 1.08999 * 109.47318 * 299.99745 * 22 17 16 49 49 H 1.08993 * 109.47342 * 60.00265 * 22 17 16 50 50 H 1.08000 * 121.39269 * 180.02562 * 23 16 15 51 51 H 1.09003 * 108.22098 * 276.45610 * 29 27 9 52 52 H 1.09001 * 108.22268 * 33.18538 * 29 27 9 53 53 H 1.08999 * 107.98135 * 122.07641 * 30 29 27 54 54 H 1.09002 * 107.97524 * 238.36293 * 30 29 27 55 55 H 1.09000 * 109.51956 * 342.66077 * 31 25 24 56 56 H 1.09000 * 109.51635 * 102.82909 * 31 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3972 2.1044 -1.3953 5 1 1.5016 2.6215 0.7980 6 1 3.5944 1.4131 0.5970 7 6 2.0102 -1.2023 0.0005 8 1 3.0525 -1.2240 0.2826 9 7 1.3733 -2.3607 -0.3567 10 6 0.2244 -2.3513 -1.2770 11 6 -1.0484 -2.8282 -0.5719 12 7 -0.7442 -4.0125 0.2437 13 6 -1.6011 -4.9119 0.8112 14 6 -2.9862 -5.0431 0.7446 15 6 -3.5592 -6.0748 1.4665 16 6 -2.8019 -6.9563 2.2204 17 6 -3.5013 -8.0560 2.9771 18 6 -4.2627 -8.9473 1.9938 19 6 -4.9722 -10.0642 2.7619 20 6 -5.9553 -9.4510 3.7612 21 6 -5.1938 -8.5599 4.7445 22 6 -4.4844 -7.4425 3.9759 23 6 -1.4358 -6.8605 2.2998 24 6 -0.8241 -5.8262 1.5831 25 6 0.5447 -5.4218 1.4179 26 6 0.5295 -4.3564 0.5914 27 6 1.8106 -3.6712 0.1654 28 1 2.3185 -4.2458 -0.6091 29 6 2.6867 -3.5107 1.3955 30 6 2.7103 -4.6872 2.3433 31 6 1.8644 -5.8946 1.9612 32 1 -0.4850 0.8401 -0.0004 33 1 0.4351 -3.0103 -2.1193 34 1 0.0703 -1.3375 -1.6468 35 1 -1.8020 -3.0840 -1.3166 36 1 -1.4274 -2.0329 0.0700 37 1 -3.5879 -4.3656 0.1571 38 1 -4.6316 -6.1996 1.4378 39 1 -2.7641 -8.6540 3.5129 40 1 -4.9999 -8.3496 1.4576 41 1 -3.5623 -9.3844 1.2822 42 1 -4.2348 -10.6618 3.2978 43 1 -5.5151 -10.6988 2.0615 44 1 -6.4611 -10.2467 4.3082 45 1 -6.6928 -8.8534 3.2252 46 1 -4.4564 -9.1575 5.2803 47 1 -5.8943 -8.1228 5.4560 48 1 -3.9419 -6.8077 4.6765 49 1 -5.2216 -6.8449 3.4398 50 1 -0.8566 -7.5544 2.8909 51 1 3.7074 -3.3194 1.0642 52 1 2.3431 -2.6355 1.9469 53 1 3.7440 -5.0184 2.4430 54 1 2.3767 -4.3385 3.3207 55 1 1.6949 -6.5140 2.8419 56 1 2.3840 -6.4768 1.2001 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019201934.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:40 Heat of formation + Delta-G solvation = 46.162451 kcal Electronic energy + Delta-G solvation = -33858.819721 eV Core-core repulsion = 29924.548949 eV Total energy + Delta-G solvation = -3934.270771 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 364.221 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.62574 -40.17302 -38.58923 -37.13646 -36.76688 -33.86059 -32.78112 -32.39818 -31.52901 -31.48019 -29.90176 -29.21796 -27.71084 -25.81674 -25.37320 -23.83804 -23.36802 -23.33019 -21.98713 -21.53843 -21.04785 -20.14106 -19.15468 -18.54485 -17.56103 -17.31743 -16.81608 -16.60436 -16.11437 -16.01389 -15.89334 -15.39291 -15.05977 -14.98262 -14.90629 -14.80377 -14.46872 -14.28805 -14.06462 -13.84761 -13.77136 -13.63649 -13.50231 -13.26607 -13.07660 -12.97444 -12.85084 -12.73332 -12.47443 -12.43818 -12.14639 -12.08803 -12.02589 -11.93415 -11.68574 -11.55018 -11.53352 -11.40817 -11.20606 -11.07787 -10.84625 -10.83011 -10.65178 -10.31813 -8.84767 -8.69730 -8.20712 -7.95418 -5.39629 0.27497 0.81398 1.45026 1.47354 1.55182 1.86453 2.06094 2.47511 3.01555 3.22616 3.35140 3.71591 3.78381 3.88177 3.91654 4.00857 4.03059 4.06959 4.16327 4.17318 4.31484 4.35893 4.39601 4.41210 4.46804 4.49271 4.58147 4.62982 4.65499 4.70216 4.71692 4.72230 4.76051 4.83511 4.89597 4.98637 4.99218 5.06470 5.11519 5.16060 5.19488 5.24835 5.28425 5.31141 5.32767 5.34337 5.38584 5.42170 5.43527 5.46926 5.55477 5.56221 5.63352 5.65266 5.71395 5.92902 6.03815 6.16224 6.30411 6.45848 6.60889 7.02448 7.67886 8.24960 9.12331 Molecular weight = 364.22amu Principal moments of inertia in cm(-1) A = 0.016690 B = 0.002496 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.218852 B =11215.115088 C =11986.939804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.045 4.045 3 Si 0.967 3.033 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.251 4.251 8 H 0.075 0.925 9 N -0.605 5.605 10 C 0.161 3.839 11 C 0.111 3.889 12 N -0.462 5.462 13 C 0.060 3.940 14 C -0.142 4.142 15 C -0.099 4.099 16 C -0.109 4.109 17 C -0.033 4.033 18 C -0.108 4.108 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.116 4.116 22 C -0.110 4.110 23 C -0.076 4.076 24 C -0.104 4.104 25 C -0.206 4.206 26 C 0.048 3.952 27 C 0.225 3.775 28 H 0.063 0.937 29 C -0.099 4.099 30 C -0.103 4.103 31 C -0.025 4.025 32 H 0.250 0.750 33 H 0.022 0.978 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.123 0.877 38 H 0.134 0.866 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.051 0.949 49 H 0.059 0.941 50 H 0.141 0.859 51 H 0.069 0.931 52 H 0.041 0.959 53 H 0.089 0.911 54 H 0.047 0.953 55 H 0.084 0.916 56 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.014 -19.028 5.824 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.241 4.241 3 Si 0.796 3.204 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.194 1.194 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.328 5.328 10 C 0.035 3.965 11 C -0.012 4.012 12 N -0.142 5.142 13 C -0.047 4.047 14 C -0.162 4.162 15 C -0.119 4.119 16 C -0.110 4.110 17 C -0.052 4.052 18 C -0.145 4.145 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.147 4.147 23 C -0.094 4.094 24 C -0.109 4.109 25 C -0.212 4.212 26 C -0.064 4.064 27 C 0.119 3.881 28 H 0.080 0.920 29 C -0.138 4.138 30 C -0.141 4.141 31 C -0.063 4.063 32 H 0.059 0.941 33 H 0.040 0.960 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.141 0.859 38 H 0.152 0.848 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.070 0.930 49 H 0.078 0.922 50 H 0.159 0.841 51 H 0.087 0.913 52 H 0.060 0.940 53 H 0.107 0.893 54 H 0.066 0.934 55 H 0.103 0.897 56 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.169 -18.543 5.595 20.653 hybrid contribution 0.039 1.944 -0.362 1.978 sum -7.130 -16.599 5.232 18.808 Atomic orbital electron populations 1.70078 1.06360 1.25775 1.54999 1.25710 0.96082 1.01168 1.01147 0.85255 0.78213 0.79716 0.77252 1.21277 1.22675 1.19414 1.19347 0.93206 0.84892 1.40578 0.90772 1.44677 1.34847 1.01937 1.51383 1.20847 0.85165 1.00508 0.89994 1.22319 1.00368 0.84328 0.94153 1.43728 1.05276 1.22313 1.42832 1.19102 0.92614 0.92927 1.00079 1.20518 0.90159 1.01453 1.04116 1.20701 0.99955 0.94218 0.96979 1.19481 0.92857 0.98443 1.00238 1.20071 0.96688 0.93319 0.95085 1.21570 0.98860 0.96786 0.97334 1.21531 0.98484 0.97209 0.98143 1.21540 0.97789 0.99081 0.97170 1.21536 0.99345 0.96765 0.97738 1.21587 0.97789 0.97843 0.97517 1.20622 0.93968 0.96348 0.98466 1.18912 0.91959 0.98387 1.01645 1.20037 0.94476 1.01107 1.05625 1.21790 0.87568 0.97240 0.99812 1.19693 0.88793 0.85189 0.94392 0.91994 1.20880 0.98947 0.98827 0.95100 1.20886 1.01120 0.94157 0.97891 1.19608 0.89236 0.96728 1.00694 0.94074 0.96019 0.89623 0.90400 0.91632 0.85865 0.84784 0.90337 0.92169 0.92540 0.91667 0.91415 0.91185 0.92241 0.91668 0.91645 0.93006 0.92232 0.84089 0.91274 0.94031 0.89286 0.93381 0.89734 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.64 10.20 21.65 0.22 -51.42 16 2 C -0.05 -2.41 4.94 84.87 0.42 -1.99 16 3 Si 0.97 43.63 29.59 68.60 2.03 45.66 16 4 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.25 -13.14 8.22 84.04 0.69 -12.45 16 8 H 0.07 3.79 7.29 -2.91 -0.02 3.77 16 9 N -0.61 -29.80 2.99 -678.13 -2.02 -31.82 16 10 C 0.16 7.63 5.39 86.28 0.47 8.09 16 11 C 0.11 4.96 7.15 86.33 0.62 5.58 16 12 N -0.46 -20.37 3.19 -497.97 -1.59 -21.96 16 13 C 0.06 2.42 6.87 39.76 0.27 2.70 16 14 C -0.14 -4.86 10.23 22.54 0.23 -4.63 16 15 C -0.10 -2.81 8.55 22.36 0.19 -2.62 16 16 C -0.11 -2.90 4.77 -20.04 -0.10 -2.99 16 17 C -0.03 -0.66 2.32 -11.54 -0.03 -0.68 16 18 C -0.11 -1.88 5.01 30.60 0.15 -1.72 16 19 C -0.12 -1.58 5.92 30.59 0.18 -1.40 16 20 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 21 C -0.12 -1.67 5.93 30.61 0.18 -1.49 16 22 C -0.11 -2.02 5.01 30.61 0.15 -1.87 16 23 C -0.08 -2.27 9.79 22.43 0.22 -2.05 16 24 C -0.10 -3.88 6.27 -20.39 -0.13 -4.00 16 25 C -0.21 -7.74 6.31 -19.38 -0.12 -7.87 16 26 C 0.05 2.04 6.08 41.29 0.25 2.29 16 27 C 0.23 9.57 3.65 43.87 0.16 9.73 16 28 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 29 C -0.10 -3.75 4.41 29.60 0.13 -3.62 16 30 C -0.10 -3.05 5.78 29.74 0.17 -2.87 16 31 C -0.03 -0.73 6.16 29.50 0.18 -0.55 16 32 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 33 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.09 4.42 5.97 -2.39 -0.01 4.41 16 35 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 36 H 0.07 3.35 7.19 -2.39 -0.02 3.34 16 37 H 0.12 3.94 8.06 -2.91 -0.02 3.92 16 38 H 0.13 3.10 6.84 -2.91 -0.02 3.08 16 39 H 0.08 1.46 7.83 -2.39 -0.02 1.44 16 40 H 0.06 1.08 7.26 -2.39 -0.02 1.06 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 46 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.06 1.13 7.27 -2.39 -0.02 1.12 16 50 H 0.14 3.49 7.93 -2.91 -0.02 3.46 16 51 H 0.07 2.39 8.08 -2.39 -0.02 2.37 16 52 H 0.04 1.88 7.09 -2.39 -0.02 1.86 16 53 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 54 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 55 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 56 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -61.77 413.20 3.97 -57.80 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.85 Total: 27.51 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 4.48 Total: -25.77 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -3.39 Total: -105.20 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -61.77 3.97 -57.80 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019201934.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.963 kcal (2) G-P(sol) polarization free energy of solvation -61.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds