Wall clock time and date at job start Tue Mar 31 2020 06:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00299 * 2 1 4 4 H 1.48497 * 109.47557 * 270.00276 * 3 2 1 5 5 H 1.48499 * 109.47086 * 30.00619 * 3 2 1 6 6 H 1.48508 * 109.47189 * 150.00398 * 3 2 1 7 7 C 1.38814 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00003 * 197.36724 * 7 2 1 9 9 N 1.36940 * 119.99669 * 17.36334 * 7 2 1 10 10 C 1.46934 * 120.62726 * 207.68792 * 9 7 2 11 11 C 1.53193 * 108.77121 * 233.58651 * 10 9 7 12 12 C 1.53039 * 109.31589 * 305.36292 * 11 10 9 13 13 C 1.50700 * 109.46066 * 181.38793 * 12 11 10 14 14 C 1.39500 * 125.70063 * 275.00103 * 13 12 11 15 15 C 1.36634 * 107.84817 * 179.75549 * 14 13 12 16 16 C 1.47974 * 126.33647 * 180.25065 * 15 14 13 17 17 C 1.39529 * 120.13507 * 359.72122 * 16 15 14 18 18 C 1.37960 * 119.85661 * 179.74445 * 17 16 15 19 19 C 1.38375 * 120.13703 * 0.51333 * 18 17 16 20 20 C 1.38320 * 120.27751 * 359.76419 * 19 18 17 21 21 C 1.50701 * 119.92866 * 179.97438 * 20 19 18 22 22 F 1.39906 * 109.46780 * 270.01608 * 21 20 19 23 23 F 1.39893 * 109.47502 * 30.01939 * 21 20 19 24 24 F 1.39904 * 109.46915 * 150.02138 * 21 20 19 25 25 C 1.38000 * 120.13930 * 359.97438 * 20 19 18 26 26 N 1.36288 * 107.32177 * 0.22572 * 15 14 13 27 27 H 0.96996 * 126.13921 * 179.97438 * 26 15 14 28 28 N 1.30897 * 125.70285 * 95.16318 * 13 12 11 29 29 C 1.53045 * 109.53588 * 61.36752 * 12 11 10 30 30 C 1.46923 * 120.63593 * 27.66415 * 9 7 2 31 31 H 0.97003 * 119.99658 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.58473 * 113.79791 * 10 9 7 33 33 H 1.09003 * 109.58830 * 353.37212 * 10 9 7 34 34 H 1.09006 * 109.49472 * 185.41135 * 11 10 9 35 35 H 1.09001 * 109.50043 * 65.31838 * 11 10 9 36 36 H 1.09000 * 109.45850 * 301.36159 * 12 11 10 37 37 H 1.08000 * 126.07314 * 0.02562 * 14 13 12 38 38 H 1.07991 * 120.07264 * 0.02562 * 17 16 15 39 39 H 1.08001 * 119.93336 * 180.25371 * 18 17 16 40 40 H 1.07995 * 119.86144 * 179.74202 * 19 18 17 41 41 H 1.08000 * 120.07198 * 179.97438 * 25 20 19 42 42 H 1.09002 * 109.49454 * 58.58597 * 29 12 11 43 43 H 1.08995 * 109.49737 * 178.68092 * 29 12 11 44 44 H 1.08993 * 109.58630 * 246.20327 * 30 9 7 45 45 H 1.09004 * 109.58112 * 6.62513 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2237 0.2786 9 7 1.3722 -2.3609 -0.3550 10 6 1.8191 -3.6549 0.1787 11 6 2.0739 -4.6095 -0.9920 12 6 0.8182 -4.6888 -1.8631 13 6 1.0537 -5.6533 -2.9968 14 6 1.6616 -5.3459 -4.2141 15 6 1.6920 -6.4859 -4.9667 16 6 2.2534 -6.6224 -6.3290 17 6 2.8174 -5.5178 -6.9682 18 6 3.3439 -5.6529 -8.2362 19 6 3.3040 -6.8780 -8.8782 20 6 2.7410 -7.9754 -8.2521 21 6 2.7012 -9.3059 -8.9588 22 9 1.5145 -9.4087 -9.6926 23 9 3.7952 -9.4070 -9.8247 24 9 2.7566 -10.3371 -8.0149 25 6 2.2159 -7.8545 -6.9817 26 7 1.1101 -7.4740 -4.2302 27 1 0.9881 -8.3961 -4.5052 28 7 0.7192 -6.9188 -3.0051 29 6 0.5003 -3.3032 -2.4301 30 6 0.2276 -2.3338 -1.2757 31 1 -0.4850 0.8401 0.0004 32 1 1.0468 -4.0692 0.8267 33 1 2.7399 -3.5180 0.7457 34 1 2.3132 -5.6010 -0.6074 35 1 2.9077 -4.2393 -1.5885 36 1 -0.0209 -5.0353 -1.2598 37 1 2.0446 -4.3797 -4.5076 38 1 2.8458 -4.5603 -6.4697 39 1 3.7844 -4.7996 -8.7305 40 1 3.7137 -6.9777 -9.8725 41 1 1.7762 -8.7120 -6.4939 42 1 1.3490 -2.9453 -3.0130 43 1 -0.3805 -3.3650 -3.0692 44 1 -0.6745 -2.6404 -0.7464 45 1 0.0984 -1.3252 -1.6683 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020390528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:15 Heat of formation + Delta-G solvation = -39.691088 kcal Electronic energy + Delta-G solvation = -31775.553100 eV Core-core repulsion = 26958.610600 eV Total energy + Delta-G solvation = -4816.942500 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.141 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -50.61089 -48.13027 -48.06689 -41.38329 -39.60807 -37.48656 -33.91285 -33.09099 -32.31700 -31.31694 -29.95576 -29.51383 -29.04087 -26.51019 -25.41088 -23.86762 -22.88539 -22.44755 -22.06169 -20.73472 -19.74086 -19.10116 -18.93095 -18.86494 -18.59189 -17.34460 -16.73239 -16.57816 -15.58099 -15.09269 -14.97752 -14.89482 -14.81443 -14.72921 -14.52637 -14.33406 -14.22496 -14.11590 -13.95143 -13.78511 -13.48977 -13.42801 -13.18327 -13.02045 -12.83067 -12.53057 -12.33274 -12.03497 -11.73563 -11.36708 -11.02042 -10.86770 -10.71562 -10.47418 -10.39431 -10.22875 -10.11913 -9.93436 -9.77588 -9.61397 -9.46908 -8.96407 -8.43405 -8.38381 -6.64566 -5.76051 -3.17754 0.22970 0.48135 1.91815 2.16693 2.67765 2.74498 3.19083 3.21368 3.39241 3.46352 3.47504 3.51575 3.95538 4.06247 4.20198 4.46782 4.52018 4.57279 4.69018 4.75874 4.95810 5.17190 5.30382 5.39110 5.47812 5.56040 5.60442 5.65220 5.66366 5.72704 5.82561 5.93963 6.08829 6.14228 6.18027 6.36174 6.54532 6.59641 6.67585 6.70312 6.79830 6.88176 7.02961 7.15601 7.40660 7.67817 7.72419 7.82765 8.48087 9.24518 9.88121 10.45068 11.32498 Molecular weight = 365.14amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.001873 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.487178 B =14947.517202 C =15854.521560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.146 3.854 11 C -0.119 4.119 12 C -0.004 4.004 13 C 0.100 3.900 14 C -0.224 4.224 15 C 0.104 3.896 16 C -0.017 4.017 17 C -0.061 4.061 18 C -0.111 4.111 19 C -0.070 4.070 20 C -0.178 4.178 21 C 0.509 3.491 22 F -0.175 7.175 23 F -0.176 7.176 24 F -0.177 7.177 25 C -0.068 4.068 26 N -0.480 5.480 27 H 0.434 0.566 28 N -0.281 5.281 29 C -0.128 4.128 30 C 0.171 3.829 31 H 0.253 0.747 32 H 0.019 0.981 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.019 0.981 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.599 -17.135 -20.155 27.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.019 3.981 11 C -0.159 4.159 12 C -0.025 4.025 13 C -0.066 4.066 14 C -0.253 4.253 15 C -0.023 4.023 16 C -0.019 4.019 17 C -0.080 4.080 18 C -0.129 4.129 19 C -0.088 4.088 20 C -0.180 4.180 21 C 0.455 3.545 22 F -0.157 7.157 23 F -0.157 7.157 24 F -0.158 7.158 25 C -0.088 4.088 26 N -0.190 5.190 27 H 0.278 0.722 28 N -0.104 5.104 29 C -0.168 4.168 30 C 0.045 3.955 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.170 0.830 38 H 0.163 0.837 39 H 0.161 0.839 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.037 0.963 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.935 -17.967 -19.456 26.939 hybrid contribution 0.658 0.579 -0.842 1.216 sum 5.593 -17.388 -20.298 27.307 Atomic orbital electron populations 1.70037 1.05223 1.25427 1.54085 1.25031 0.95273 0.98363 1.01103 0.86302 0.79117 0.83781 0.77649 1.21493 1.21854 1.20483 1.19202 0.92701 0.84879 1.41142 0.91658 1.44082 1.35841 1.01382 1.50244 1.20909 0.97727 0.86800 0.92630 1.22020 0.96288 0.99222 0.98364 1.19649 0.99339 0.92155 0.91324 1.22641 0.95729 0.91918 0.96284 1.21405 1.10320 0.98660 0.94936 1.19331 1.00653 0.90269 0.92012 1.17986 0.99373 0.93480 0.91093 1.21529 0.93621 0.98557 0.94312 1.21165 0.99536 0.97418 0.94773 1.21062 0.95990 0.91649 1.00113 1.19793 1.08175 0.93086 0.96922 1.18269 0.73863 0.85315 0.77033 1.93243 1.47474 1.96628 1.78329 1.93196 1.54681 1.96609 1.71215 1.93202 1.96079 1.61848 1.64704 1.20825 0.97348 0.97503 0.93077 1.46513 1.48842 1.10896 1.12714 0.72242 1.77357 1.22893 1.10538 0.99566 1.22238 1.00361 0.94099 1.00143 1.20799 0.88669 0.98248 0.87815 0.93672 0.96337 0.92637 0.93092 0.92043 0.90316 0.82985 0.83746 0.83908 0.84354 0.85107 0.92205 0.93114 0.96330 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.85 11.19 55.49 0.62 -25.23 16 2 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 3 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.25 -6.71 9.59 -15.06 -0.14 -6.86 16 8 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 9 N -0.59 -14.52 3.00 -172.32 -0.52 -15.04 16 10 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 11 C -0.12 -2.08 5.34 -26.61 -0.14 -2.22 16 12 C 0.00 -0.07 2.61 -91.73 -0.24 -0.31 16 13 C 0.10 1.56 6.10 -82.52 -0.50 1.06 16 14 C -0.22 -3.02 9.36 -39.69 -0.37 -3.39 16 15 C 0.10 1.21 6.97 -82.48 -0.58 0.64 16 16 C -0.02 -0.16 5.87 -104.96 -0.62 -0.78 16 17 C -0.06 -0.47 9.57 -39.20 -0.38 -0.85 16 18 C -0.11 -0.68 10.03 -39.63 -0.40 -1.08 16 19 C -0.07 -0.45 9.39 -39.50 -0.37 -0.83 16 20 C -0.18 -1.39 5.45 -104.68 -0.57 -1.96 16 21 C 0.51 4.10 3.36 36.01 0.12 4.22 16 22 F -0.18 -1.53 17.30 2.25 0.04 -1.49 16 23 F -0.18 -1.42 16.45 2.25 0.04 -1.38 16 24 F -0.18 -1.52 16.46 2.25 0.04 -1.48 16 25 C -0.07 -0.56 9.05 -39.21 -0.35 -0.92 16 26 N -0.48 -5.74 7.30 33.28 0.24 -5.50 16 27 H 0.43 3.80 8.12 -182.62 -1.48 2.31 16 28 N -0.28 -4.32 12.68 33.61 0.43 -3.90 16 29 C -0.13 -2.36 4.92 -26.61 -0.13 -2.49 16 30 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.15 1.85 6.67 -52.49 -0.35 1.50 16 38 H 0.14 0.98 7.02 -52.49 -0.37 0.61 16 39 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.14 0.65 7.59 -52.49 -0.40 0.25 16 41 H 0.13 0.90 6.76 -52.49 -0.35 0.55 16 42 H 0.06 1.08 7.36 -51.93 -0.38 0.70 16 43 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.09 2.33 6.04 -51.93 -0.31 2.01 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -30.93 380.23 -9.78 -40.71 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.57 Total: 0.16 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -4.80 Total: -8.90 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: 0.77 Total: -49.66 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.11 Total: -4.35 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.93 -9.78 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020390528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.020 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds