Wall clock time and date at job start Tue Mar 31 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00299 * 2 1 4 4 H 1.48497 * 109.47557 * 270.00276 * 3 2 1 5 5 H 1.48499 * 109.47086 * 30.00619 * 3 2 1 6 6 H 1.48508 * 109.47189 * 150.00398 * 3 2 1 7 7 C 1.38814 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00003 * 197.36724 * 7 2 1 9 9 N 1.36940 * 119.99669 * 17.36334 * 7 2 1 10 10 C 1.46934 * 120.62726 * 207.68792 * 9 7 2 11 11 C 1.53193 * 108.77121 * 233.58651 * 10 9 7 12 12 C 1.53039 * 109.31589 * 305.36292 * 11 10 9 13 13 C 1.50700 * 109.46066 * 181.38793 * 12 11 10 14 14 C 1.39500 * 125.70063 * 275.00103 * 13 12 11 15 15 C 1.36634 * 107.84817 * 179.75549 * 14 13 12 16 16 C 1.47974 * 126.33647 * 180.25065 * 15 14 13 17 17 C 1.39529 * 120.13507 * 359.72122 * 16 15 14 18 18 C 1.37960 * 119.85661 * 179.74445 * 17 16 15 19 19 C 1.38375 * 120.13703 * 0.51333 * 18 17 16 20 20 C 1.38320 * 120.27751 * 359.76419 * 19 18 17 21 21 C 1.50701 * 119.92866 * 179.97438 * 20 19 18 22 22 F 1.39906 * 109.46780 * 270.01608 * 21 20 19 23 23 F 1.39893 * 109.47502 * 30.01939 * 21 20 19 24 24 F 1.39904 * 109.46915 * 150.02138 * 21 20 19 25 25 C 1.38000 * 120.13930 * 359.97438 * 20 19 18 26 26 N 1.36288 * 107.32177 * 0.22572 * 15 14 13 27 27 H 0.96996 * 126.13921 * 179.97438 * 26 15 14 28 28 N 1.30897 * 125.70285 * 95.16318 * 13 12 11 29 29 C 1.53045 * 109.53588 * 61.36752 * 12 11 10 30 30 C 1.46923 * 120.63593 * 27.66415 * 9 7 2 31 31 H 0.97003 * 119.99658 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.58473 * 113.79791 * 10 9 7 33 33 H 1.09003 * 109.58830 * 353.37212 * 10 9 7 34 34 H 1.09006 * 109.49472 * 185.41135 * 11 10 9 35 35 H 1.09001 * 109.50043 * 65.31838 * 11 10 9 36 36 H 1.09000 * 109.45850 * 301.36159 * 12 11 10 37 37 H 1.08000 * 126.07314 * 0.02562 * 14 13 12 38 38 H 1.07991 * 120.07264 * 0.02562 * 17 16 15 39 39 H 1.08001 * 119.93336 * 180.25371 * 18 17 16 40 40 H 1.07995 * 119.86144 * 179.74202 * 19 18 17 41 41 H 1.08000 * 120.07198 * 179.97438 * 25 20 19 42 42 H 1.09002 * 109.49454 * 58.58597 * 29 12 11 43 43 H 1.08995 * 109.49737 * 178.68092 * 29 12 11 44 44 H 1.08993 * 109.58630 * 246.20327 * 30 9 7 45 45 H 1.09004 * 109.58112 * 6.62513 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2237 0.2786 9 7 1.3722 -2.3609 -0.3550 10 6 1.8191 -3.6549 0.1787 11 6 2.0739 -4.6095 -0.9920 12 6 0.8182 -4.6888 -1.8631 13 6 1.0537 -5.6533 -2.9968 14 6 1.6616 -5.3459 -4.2141 15 6 1.6920 -6.4859 -4.9667 16 6 2.2534 -6.6224 -6.3290 17 6 2.8174 -5.5178 -6.9682 18 6 3.3439 -5.6529 -8.2362 19 6 3.3040 -6.8780 -8.8782 20 6 2.7410 -7.9754 -8.2521 21 6 2.7012 -9.3059 -8.9588 22 9 1.5145 -9.4087 -9.6926 23 9 3.7952 -9.4070 -9.8247 24 9 2.7566 -10.3371 -8.0149 25 6 2.2159 -7.8545 -6.9817 26 7 1.1101 -7.4740 -4.2302 27 1 0.9881 -8.3961 -4.5052 28 7 0.7192 -6.9188 -3.0051 29 6 0.5003 -3.3032 -2.4301 30 6 0.2276 -2.3338 -1.2757 31 1 -0.4850 0.8401 0.0004 32 1 1.0468 -4.0692 0.8267 33 1 2.7399 -3.5180 0.7457 34 1 2.3132 -5.6010 -0.6074 35 1 2.9077 -4.2393 -1.5885 36 1 -0.0209 -5.0353 -1.2598 37 1 2.0446 -4.3797 -4.5076 38 1 2.8458 -4.5603 -6.4697 39 1 3.7844 -4.7996 -8.7305 40 1 3.7137 -6.9777 -9.8725 41 1 1.7762 -8.7120 -6.4939 42 1 1.3490 -2.9453 -3.0130 43 1 -0.3805 -3.3650 -3.0692 44 1 -0.6745 -2.6404 -0.7464 45 1 0.0984 -1.3252 -1.6683 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020390528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:10 Heat of formation + Delta-G solvation = -55.124237 kcal Electronic energy + Delta-G solvation = -31776.222332 eV Core-core repulsion = 26958.610600 eV Total energy + Delta-G solvation = -4817.611732 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.141 amu Computer time = 3.95 seconds Orbital eigenvalues (eV) -51.24002 -48.75943 -48.70574 -42.36839 -40.25016 -39.09003 -35.49247 -33.94807 -33.26663 -32.60392 -31.51639 -30.98035 -29.96566 -27.33026 -27.00823 -24.63245 -24.30060 -23.69963 -23.26012 -21.60388 -21.21066 -20.10658 -19.81798 -19.56309 -19.38945 -18.61076 -18.04759 -17.25841 -16.81237 -16.19264 -15.96225 -15.85652 -15.66673 -15.57023 -15.43542 -15.27366 -15.17078 -15.04424 -14.89566 -14.86220 -14.72740 -14.63155 -14.30833 -14.06226 -13.94272 -13.89552 -13.64583 -13.07236 -12.89493 -12.71798 -12.54950 -12.34388 -12.26688 -12.00709 -11.94979 -11.77007 -11.60892 -11.35445 -11.16295 -10.95198 -10.49308 -10.31382 -10.03851 -9.25529 -8.63980 -7.81874 -5.26684 -0.41052 -0.08707 1.04243 1.51736 1.52641 1.55962 1.61608 1.73795 1.77004 2.52735 2.56387 2.61108 2.89830 3.28008 3.33984 3.34230 3.57214 3.67327 3.75314 3.94118 3.99236 4.07118 4.16347 4.21173 4.36507 4.45459 4.55431 4.59171 4.66071 4.75184 4.76683 4.81091 4.96126 5.01321 5.06224 5.16458 5.23214 5.26017 5.26761 5.32904 5.42243 5.54514 5.61364 5.63452 5.71640 5.81864 6.29250 6.44780 6.65767 7.20470 7.91591 8.43941 9.24747 Molecular weight = 365.14amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.001873 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.487178 B =14947.517202 C =15854.521560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.966 3.034 4 H -0.283 1.283 5 H -0.298 1.298 6 H -0.269 1.269 7 C -0.258 4.258 8 H 0.068 0.932 9 N -0.609 5.609 10 C 0.142 3.858 11 C -0.104 4.104 12 C 0.004 3.996 13 C 0.088 3.912 14 C -0.246 4.246 15 C 0.126 3.874 16 C -0.039 4.039 17 C -0.062 4.062 18 C -0.106 4.106 19 C -0.063 4.063 20 C -0.189 4.189 21 C 0.512 3.488 22 F -0.180 7.180 23 F -0.175 7.175 24 F -0.182 7.182 25 C -0.069 4.069 26 N -0.470 5.470 27 H 0.447 0.553 28 N -0.310 5.310 29 C -0.110 4.110 30 C 0.177 3.823 31 H 0.249 0.751 32 H 0.012 0.988 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.162 0.838 38 H 0.153 0.847 39 H 0.172 0.828 40 H 0.159 0.841 41 H 0.139 0.861 42 H 0.066 0.934 43 H 0.063 0.937 44 H -0.007 1.007 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.396 -17.781 -22.490 29.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.795 3.205 4 H -0.209 1.209 5 H -0.225 1.225 6 H -0.194 1.194 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.333 5.333 10 C 0.017 3.983 11 C -0.143 4.143 12 C -0.016 4.016 13 C -0.077 4.077 14 C -0.274 4.274 15 C -0.002 4.002 16 C -0.041 4.041 17 C -0.081 4.081 18 C -0.123 4.123 19 C -0.081 4.081 20 C -0.190 4.190 21 C 0.458 3.542 22 F -0.162 7.162 23 F -0.157 7.157 24 F -0.163 7.163 25 C -0.088 4.088 26 N -0.181 5.181 27 H 0.293 0.707 28 N -0.134 5.134 29 C -0.150 4.150 30 C 0.051 3.949 31 H 0.058 0.942 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.180 0.820 38 H 0.171 0.829 39 H 0.190 0.810 40 H 0.177 0.823 41 H 0.156 0.844 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.011 0.989 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.746 -18.656 -21.792 29.469 hybrid contribution 0.125 0.668 -0.207 0.711 sum 6.871 -17.988 -21.999 29.236 Atomic orbital electron populations 1.70197 1.06676 1.25766 1.55623 1.25786 0.96011 1.01462 1.01475 0.85276 0.78026 0.79567 0.77639 1.20944 1.22515 1.19412 1.19528 0.92982 0.85974 1.40359 0.91449 1.44342 1.35895 1.02120 1.50942 1.21040 0.97396 0.85947 0.93955 1.21822 0.96518 0.98963 0.97037 1.19385 0.98606 0.91808 0.91849 1.22282 0.97052 0.91915 0.96466 1.21502 1.11506 0.99860 0.94578 1.19587 0.98708 0.89352 0.92537 1.17951 1.01262 0.94589 0.90266 1.21761 0.92952 0.98448 0.94924 1.21488 0.98641 0.98177 0.94038 1.21412 0.94590 0.91268 1.00828 1.19850 1.08922 0.93317 0.96924 1.18295 0.73653 0.85384 0.76907 1.93234 1.47813 1.96662 1.78473 1.93196 1.54631 1.96619 1.71223 1.93192 1.96087 1.62151 1.64866 1.20919 0.97105 0.97482 0.93317 1.46495 1.48095 1.11691 1.11816 0.70675 1.77265 1.24084 1.10650 1.01355 1.21969 1.01164 0.93674 0.98180 1.20611 0.87639 0.97794 0.88878 0.94173 0.96991 0.92391 0.91414 0.91821 0.91607 0.82004 0.82924 0.81011 0.82316 0.84355 0.91526 0.91852 0.98856 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.19 11.19 21.65 0.24 -54.95 16 2 C -0.05 -2.89 4.91 84.86 0.42 -2.47 16 3 Si 0.97 44.28 29.59 68.60 2.03 46.31 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.26 -14.04 9.59 84.03 0.81 -13.24 16 8 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 9 N -0.61 -30.42 3.00 -699.09 -2.09 -32.51 16 10 C 0.14 5.92 6.52 86.36 0.56 6.49 16 11 C -0.10 -3.55 5.34 30.67 0.16 -3.39 16 12 C 0.00 0.14 2.61 -11.51 -0.03 0.11 16 13 C 0.09 2.66 6.10 43.00 0.26 2.92 16 14 C -0.25 -6.24 9.36 22.20 0.21 -6.04 16 15 C 0.13 2.71 6.97 40.66 0.28 2.99 16 16 C -0.04 -0.63 5.87 -20.09 -0.12 -0.75 16 17 C -0.06 -0.78 9.57 22.52 0.22 -0.56 16 18 C -0.11 -0.92 10.03 22.24 0.22 -0.69 16 19 C -0.06 -0.61 9.39 22.32 0.21 -0.40 16 20 C -0.19 -2.49 5.45 -19.90 -0.11 -2.60 16 21 C 0.51 7.26 3.36 71.24 0.24 7.50 16 22 F -0.18 -2.85 17.30 44.97 0.78 -2.07 16 23 F -0.18 -2.46 16.45 44.97 0.74 -1.72 16 24 F -0.18 -2.83 16.46 44.97 0.74 -2.09 16 25 C -0.07 -0.99 9.05 22.51 0.20 -0.79 16 26 N -0.47 -10.54 7.30 -48.61 -0.35 -10.90 16 27 H 0.45 7.12 8.12 -213.34 -1.73 5.39 16 28 N -0.31 -9.26 12.68 -47.58 -0.60 -9.86 16 29 C -0.11 -4.05 4.92 30.67 0.15 -3.90 16 30 C 0.18 8.45 5.31 86.36 0.46 8.91 16 31 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16 34 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.16 3.64 6.67 -2.91 -0.02 3.62 16 38 H 0.15 1.64 7.02 -2.92 -0.02 1.62 16 39 H 0.17 0.48 8.06 -2.91 -0.02 0.46 16 40 H 0.16 0.88 7.59 -2.91 -0.02 0.86 16 41 H 0.14 1.65 6.76 -2.91 -0.02 1.63 16 42 H 0.07 2.36 7.36 -2.39 -0.02 2.34 16 43 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 44 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 45 H 0.06 3.19 6.04 -2.38 -0.01 3.17 16 Total: -1.00 -67.47 380.23 4.95 -62.53 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -0.68 Total: 11.16 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 4.15 Total: -5.90 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -2.81 Total: -108.22 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 2.26 Total: -5.89 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -67.47 4.95 -62.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020390528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.401 kcal (2) G-P(sol) polarization free energy of solvation -67.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.95 seconds