Wall clock time and date at job start Tue Mar 31 2020 06:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99399 * 2 1 4 4 H 1.48499 * 109.47244 * 269.72297 * 3 2 1 5 5 H 1.48497 * 109.47129 * 29.72575 * 3 2 1 6 6 H 1.48505 * 109.46806 * 149.72428 * 3 2 1 7 7 C 1.38806 * 120.00510 * 179.72319 * 2 1 3 8 8 H 1.07998 * 120.00135 * 155.26438 * 7 2 1 9 9 N 1.36935 * 119.99901 * 335.27507 * 7 2 1 10 10 C 1.46923 * 120.62889 * 332.09815 * 9 7 2 11 11 C 1.52759 * 109.01237 * 233.58434 * 10 9 7 12 12 C 1.53040 * 109.38545 * 305.59084 * 11 10 9 13 13 C 1.50696 * 109.46247 * 181.25500 * 12 11 10 14 14 C 1.39505 * 125.70103 * 324.93398 * 13 12 11 15 15 C 1.36643 * 107.84797 * 180.02562 * 14 13 12 16 16 C 1.47961 * 126.33988 * 180.02562 * 15 14 13 17 17 C 1.39513 * 120.13044 * 319.72196 * 16 15 14 18 18 C 1.37931 * 119.88570 * 179.67910 * 17 16 15 19 19 C 1.38499 * 120.15159 * 0.61830 * 18 17 16 20 20 Cl 1.73595 * 119.86775 * 179.70060 * 19 18 17 21 21 C 1.38414 * 120.26402 * 359.68103 * 19 18 17 22 22 C 1.38101 * 120.10879 * 359.97438 * 21 19 18 23 23 Cl 1.73608 * 120.07515 * 180.02562 * 22 21 19 24 24 N 1.36299 * 107.31932 * 0.02562 * 15 14 13 25 25 H 0.96993 * 126.13227 * 180.02562 * 24 15 14 26 26 N 1.30895 * 125.70147 * 144.62810 * 13 12 11 27 27 C 1.53051 * 109.53536 * 61.23641 * 12 11 10 28 28 C 1.46923 * 120.63374 * 152.38349 * 9 7 2 29 29 H 0.97000 * 119.99468 * 174.24935 * 1 2 3 30 30 H 1.09000 * 109.59189 * 353.42211 * 10 9 7 31 31 H 1.09006 * 109.58862 * 113.85065 * 10 9 7 32 32 H 1.08998 * 109.57125 * 185.55519 * 11 10 9 33 33 H 1.09008 * 109.38350 * 65.51618 * 11 10 9 34 34 H 1.08990 * 109.45979 * 301.21912 * 12 11 10 35 35 H 1.07994 * 126.07762 * 359.97438 * 14 13 12 36 36 H 1.08004 * 120.05644 * 359.97438 * 17 16 15 37 37 H 1.08003 * 119.92635 * 180.30337 * 18 17 16 38 38 H 1.07999 * 119.94623 * 180.02562 * 21 19 18 39 39 H 1.09002 * 109.49549 * 178.68448 * 27 12 11 40 40 H 1.09002 * 109.52407 * 58.60242 * 27 12 11 41 41 H 1.09006 * 109.58528 * 246.15354 * 28 9 7 42 42 H 1.09001 * 109.58720 * 6.57645 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.5034 2.0432 -1.4000 5 1 1.4445 2.6544 0.6942 6 1 3.5447 1.4420 0.7059 7 6 2.0104 -1.2020 0.0058 8 1 3.0160 -1.2468 -0.3853 9 7 1.4199 -2.3312 0.5073 10 6 0.3882 -2.2368 1.5490 11 6 0.7870 -3.1246 2.7264 12 6 1.0461 -4.5471 2.2250 13 6 1.4098 -5.4316 3.3896 14 6 2.1475 -5.0427 4.5080 15 6 2.2617 -6.1267 5.3320 16 6 2.9646 -6.1686 6.6334 17 6 4.1825 -5.5072 6.7931 18 6 4.8302 -5.5440 8.0104 19 6 4.2804 -6.2465 9.0699 20 17 5.1056 -6.2944 10.5964 21 6 3.0754 -6.9101 8.9166 22 6 2.4142 -6.8745 7.7046 23 17 0.9026 -7.7066 7.5135 24 7 1.6083 -7.1622 4.7333 25 1 1.5196 -8.0620 5.0843 26 7 1.0816 -6.6916 3.5236 27 6 2.1976 -4.5326 1.2168 28 6 1.8105 -3.6605 0.0183 29 1 -0.4849 -0.8359 -0.0842 30 1 0.3017 -1.2035 1.8852 31 1 -0.5678 -2.5740 1.1482 32 1 -0.0174 -3.1390 3.4618 33 1 1.6933 -2.7302 3.1862 34 1 0.1471 -4.9320 1.7439 35 1 2.5564 -4.0598 4.6898 36 1 4.6152 -4.9633 5.9664 37 1 5.7706 -5.0282 8.1362 38 1 2.6512 -7.4559 9.7463 39 1 2.3970 -5.5492 0.8777 40 1 3.0910 -4.1251 1.6899 41 1 0.9729 -4.1161 -0.5099 42 1 2.6623 -3.5663 -0.6552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020405648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:57 Heat of formation + Delta-G solvation = 94.411658 kcal Electronic energy + Delta-G solvation = -27070.937695 eV Core-core repulsion = 23104.110287 eV Total energy + Delta-G solvation = -3966.827408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 365.076 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.38242 -39.72449 -37.69115 -37.31706 -36.84423 -34.02581 -32.62158 -31.68770 -31.25662 -30.10376 -29.30747 -28.84829 -25.27501 -23.91116 -23.45844 -22.52936 -22.19894 -20.79264 -19.78195 -18.80695 -18.48156 -17.42492 -17.20660 -16.36579 -15.77973 -14.87902 -14.80493 -14.54584 -14.37678 -14.25878 -14.10560 -13.77003 -13.46500 -13.38623 -13.23128 -12.94793 -12.79732 -12.53149 -12.47811 -12.17398 -11.69859 -11.58039 -11.51846 -11.48943 -11.06006 -10.70332 -10.67045 -10.43516 -10.32567 -10.09166 -10.02833 -9.81115 -9.71173 -9.52493 -9.23264 -8.97035 -8.48164 -8.32198 -6.83108 -6.01858 -3.17664 0.11563 0.48175 1.23768 1.68417 1.80055 2.64337 2.75095 3.01494 3.52594 3.56565 3.71872 3.95844 4.10990 4.35307 4.54338 4.63593 4.67584 4.70939 5.09983 5.13851 5.27801 5.34769 5.45656 5.49119 5.55550 5.56679 5.64649 5.71382 5.83299 5.92054 6.01470 6.05597 6.25803 6.43003 6.52516 6.56099 6.60986 6.69481 6.79623 6.89304 7.14154 7.14719 7.25776 7.70420 8.05683 8.62950 9.17512 9.90184 10.35440 11.26680 Molecular weight = 365.08amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.002212 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.064126 B =12654.315968 C =14055.495882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.026 4.026 3 Si 1.064 2.936 4 H -0.295 1.295 5 H -0.286 1.286 6 H -0.293 1.293 7 C -0.346 4.346 8 H 0.055 0.945 9 N -0.599 5.599 10 C 0.151 3.849 11 C -0.123 4.123 12 C -0.003 4.003 13 C 0.097 3.903 14 C -0.220 4.220 15 C 0.100 3.900 16 C -0.008 4.008 17 C -0.067 4.067 18 C -0.099 4.099 19 C -0.022 4.022 20 Cl -0.055 7.055 21 C -0.099 4.099 22 C -0.021 4.021 23 Cl -0.049 7.049 24 N -0.470 5.470 25 H 0.434 0.566 26 N -0.280 5.280 27 C -0.119 4.119 28 C 0.148 3.852 29 H 0.269 0.731 30 H 0.082 0.918 31 H 0.016 0.984 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.017 0.983 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.387 -16.410 20.554 27.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.227 4.227 3 Si 0.894 3.106 4 H -0.223 1.223 5 H -0.212 1.212 6 H -0.219 1.219 7 C -0.476 4.476 8 H 0.073 0.927 9 N -0.323 5.323 10 C 0.024 3.976 11 C -0.163 4.163 12 C -0.023 4.023 13 C -0.068 4.068 14 C -0.250 4.250 15 C -0.027 4.027 16 C -0.011 4.011 17 C -0.087 4.087 18 C -0.118 4.118 19 C -0.049 4.049 20 Cl -0.025 7.025 21 C -0.118 4.118 22 C -0.049 4.049 23 Cl -0.020 7.020 24 N -0.180 5.180 25 H 0.279 0.721 26 N -0.103 5.103 27 C -0.159 4.159 28 C 0.022 3.978 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.170 0.830 36 H 0.171 0.829 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.539 -15.808 20.182 26.721 hybrid contribution 0.465 -1.732 0.751 1.944 sum 8.004 -17.540 20.933 28.458 Atomic orbital electron populations 1.70748 1.06611 1.30374 1.48068 1.25813 0.96538 1.01412 0.98966 0.83555 0.74693 0.75980 0.76343 1.22259 1.21227 1.21914 1.19969 0.97272 0.88572 1.41740 0.92704 1.44119 1.45928 1.01224 1.41067 1.20872 0.90444 0.99046 0.87191 1.22036 1.01121 0.93702 0.99468 1.19599 0.99280 0.93032 0.90421 1.22534 0.95939 0.91665 0.96675 1.21403 1.08880 0.99412 0.95286 1.19205 0.99626 0.90292 0.93588 1.18048 0.94665 0.98343 0.90031 1.21257 0.92341 0.97281 0.97783 1.21168 1.01029 0.98421 0.91175 1.20872 0.94454 1.00976 0.88626 1.98403 1.77790 1.97363 1.28993 1.20805 0.93866 1.00340 0.96804 1.20875 0.89860 0.99495 0.94669 1.98405 1.29888 1.76464 1.97254 1.46715 1.43389 1.11366 1.16519 0.72118 1.77333 1.20725 1.12824 0.99382 1.22010 0.97250 0.99333 0.97287 1.20897 0.97581 0.86359 0.92984 0.91971 0.90018 0.96554 0.92871 0.91847 0.90369 0.83005 0.82920 0.83458 0.83423 0.92952 0.91944 0.96531 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.31 12.40 55.49 0.69 -26.62 16 2 C -0.03 -0.72 4.69 -17.43 -0.08 -0.80 16 3 Si 1.06 25.01 29.99 -169.99 -5.10 19.91 16 4 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.35 -9.55 9.49 -15.06 -0.14 -9.69 16 8 H 0.06 1.52 7.94 -52.49 -0.42 1.10 16 9 N -0.60 -14.80 2.86 -172.59 -0.49 -15.29 16 10 C 0.15 3.46 4.66 -3.93 -0.02 3.44 16 11 C -0.12 -2.28 4.90 -26.83 -0.13 -2.41 16 12 C 0.00 -0.05 2.61 -91.73 -0.24 -0.29 16 13 C 0.10 1.53 6.10 -82.52 -0.50 1.03 16 14 C -0.22 -3.04 9.69 -39.69 -0.38 -3.42 16 15 C 0.10 1.21 6.24 -82.47 -0.51 0.69 16 16 C -0.01 -0.08 5.83 -104.93 -0.61 -0.69 16 17 C -0.07 -0.53 9.61 -39.22 -0.38 -0.90 16 18 C -0.10 -0.66 9.81 -39.60 -0.39 -1.05 16 19 C -0.02 -0.16 6.32 -39.42 -0.25 -0.41 16 20 Cl -0.05 -0.37 28.95 -51.86 -1.50 -1.87 16 21 C -0.10 -0.73 9.60 -39.57 -0.38 -1.11 16 22 C -0.02 -0.19 6.35 -39.12 -0.25 -0.43 16 23 Cl -0.05 -0.44 26.20 -51.86 -1.36 -1.80 16 24 N -0.47 -5.92 6.65 33.28 0.22 -5.70 16 25 H 0.43 4.51 7.60 -182.62 -1.39 3.12 16 26 N -0.28 -4.37 12.68 33.61 0.43 -3.94 16 27 C -0.12 -2.09 5.34 -26.61 -0.14 -2.23 16 28 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 29 H 0.27 8.09 6.71 -40.82 -0.27 7.81 16 30 H 0.08 2.11 6.30 -51.93 -0.33 1.78 16 31 H 0.02 0.39 7.87 -51.93 -0.41 -0.02 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.17 7.36 -51.92 -0.38 0.79 16 34 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.15 1.94 7.44 -52.49 -0.39 1.55 16 36 H 0.15 1.02 8.03 -52.48 -0.42 0.60 16 37 H 0.15 0.69 8.06 -52.48 -0.42 0.27 16 38 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -30.95 372.81 -12.11 -43.06 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.18 Total: 1.83 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -4.44 Total: -15.20 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.84 Total: -51.55 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.10 Total: 19.91 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -2.86 Total: -3.67 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.95 -12.11 -43.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020405648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.473 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds