Wall clock time and date at job start Tue Mar 31 2020 06:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99399 * 2 1 4 4 H 1.48499 * 109.47244 * 269.72297 * 3 2 1 5 5 H 1.48497 * 109.47129 * 29.72575 * 3 2 1 6 6 H 1.48505 * 109.46806 * 149.72428 * 3 2 1 7 7 C 1.38806 * 120.00510 * 179.72319 * 2 1 3 8 8 H 1.07998 * 120.00135 * 155.26438 * 7 2 1 9 9 N 1.36935 * 119.99901 * 335.27507 * 7 2 1 10 10 C 1.46923 * 120.62889 * 332.09815 * 9 7 2 11 11 C 1.52759 * 109.01237 * 233.58434 * 10 9 7 12 12 C 1.53040 * 109.38545 * 305.59084 * 11 10 9 13 13 C 1.50696 * 109.46247 * 181.25500 * 12 11 10 14 14 C 1.39505 * 125.70103 * 324.93398 * 13 12 11 15 15 C 1.36643 * 107.84797 * 180.02562 * 14 13 12 16 16 C 1.47961 * 126.33988 * 180.02562 * 15 14 13 17 17 C 1.39513 * 120.13044 * 319.72196 * 16 15 14 18 18 C 1.37931 * 119.88570 * 179.67910 * 17 16 15 19 19 C 1.38499 * 120.15159 * 0.61830 * 18 17 16 20 20 Cl 1.73595 * 119.86775 * 179.70060 * 19 18 17 21 21 C 1.38414 * 120.26402 * 359.68103 * 19 18 17 22 22 C 1.38101 * 120.10879 * 359.97438 * 21 19 18 23 23 Cl 1.73608 * 120.07515 * 180.02562 * 22 21 19 24 24 N 1.36299 * 107.31932 * 0.02562 * 15 14 13 25 25 H 0.96993 * 126.13227 * 180.02562 * 24 15 14 26 26 N 1.30895 * 125.70147 * 144.62810 * 13 12 11 27 27 C 1.53051 * 109.53536 * 61.23641 * 12 11 10 28 28 C 1.46923 * 120.63374 * 152.38349 * 9 7 2 29 29 H 0.97000 * 119.99468 * 174.24935 * 1 2 3 30 30 H 1.09000 * 109.59189 * 353.42211 * 10 9 7 31 31 H 1.09006 * 109.58862 * 113.85065 * 10 9 7 32 32 H 1.08998 * 109.57125 * 185.55519 * 11 10 9 33 33 H 1.09008 * 109.38350 * 65.51618 * 11 10 9 34 34 H 1.08990 * 109.45979 * 301.21912 * 12 11 10 35 35 H 1.07994 * 126.07762 * 359.97438 * 14 13 12 36 36 H 1.08004 * 120.05644 * 359.97438 * 17 16 15 37 37 H 1.08003 * 119.92635 * 180.30337 * 18 17 16 38 38 H 1.07999 * 119.94623 * 180.02562 * 21 19 18 39 39 H 1.09002 * 109.49549 * 178.68448 * 27 12 11 40 40 H 1.09002 * 109.52407 * 58.60242 * 27 12 11 41 41 H 1.09006 * 109.58528 * 246.15354 * 28 9 7 42 42 H 1.09001 * 109.58720 * 6.57645 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.5034 2.0432 -1.4000 5 1 1.4445 2.6544 0.6942 6 1 3.5447 1.4420 0.7059 7 6 2.0104 -1.2020 0.0058 8 1 3.0160 -1.2468 -0.3853 9 7 1.4199 -2.3312 0.5073 10 6 0.3882 -2.2368 1.5490 11 6 0.7870 -3.1246 2.7264 12 6 1.0461 -4.5471 2.2250 13 6 1.4098 -5.4316 3.3896 14 6 2.1475 -5.0427 4.5080 15 6 2.2617 -6.1267 5.3320 16 6 2.9646 -6.1686 6.6334 17 6 4.1825 -5.5072 6.7931 18 6 4.8302 -5.5440 8.0104 19 6 4.2804 -6.2465 9.0699 20 17 5.1056 -6.2944 10.5964 21 6 3.0754 -6.9101 8.9166 22 6 2.4142 -6.8745 7.7046 23 17 0.9026 -7.7066 7.5135 24 7 1.6083 -7.1622 4.7333 25 1 1.5196 -8.0620 5.0843 26 7 1.0816 -6.6916 3.5236 27 6 2.1976 -4.5326 1.2168 28 6 1.8105 -3.6605 0.0183 29 1 -0.4849 -0.8359 -0.0842 30 1 0.3017 -1.2035 1.8852 31 1 -0.5678 -2.5740 1.1482 32 1 -0.0174 -3.1390 3.4618 33 1 1.6933 -2.7302 3.1862 34 1 0.1471 -4.9320 1.7439 35 1 2.5564 -4.0598 4.6898 36 1 4.6152 -4.9633 5.9664 37 1 5.7706 -5.0282 8.1362 38 1 2.6512 -7.4559 9.7463 39 1 2.3970 -5.5492 0.8777 40 1 3.0910 -4.1251 1.6899 41 1 0.9729 -4.1161 -0.5099 42 1 2.6623 -3.5663 -0.6552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020405648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:56 Heat of formation + Delta-G solvation = 79.204373 kcal Electronic energy + Delta-G solvation = -27071.597132 eV Core-core repulsion = 23104.110287 eV Total energy + Delta-G solvation = -3967.486845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 365.076 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.40945 -40.40611 -39.31872 -37.95366 -37.44338 -35.71691 -33.62845 -32.90653 -32.14528 -31.66346 -30.86734 -29.76909 -27.12134 -24.66580 -24.39369 -23.96674 -23.79570 -21.74412 -21.28004 -20.21974 -19.43507 -19.14266 -18.06201 -17.01897 -16.54860 -16.32632 -15.95778 -15.80211 -15.61119 -15.35645 -15.18097 -15.08193 -15.03423 -14.69208 -14.41048 -14.31043 -13.88711 -13.50511 -13.43437 -13.28254 -13.02758 -12.76166 -12.48052 -12.34502 -12.23356 -12.11260 -12.04363 -11.96245 -11.89397 -11.78970 -11.67770 -11.38359 -11.13448 -10.63036 -10.41465 -10.15201 -10.01602 -9.37549 -8.88732 -8.19240 -5.34023 -0.55933 -0.09000 0.62427 0.84539 1.09184 1.62884 1.65912 1.70664 1.72616 1.88382 2.31333 2.70884 3.13019 3.27287 3.47304 3.53750 3.61964 3.83478 3.91412 3.97354 4.06475 4.08868 4.33046 4.38220 4.44860 4.57239 4.59039 4.61808 4.66580 4.73695 4.84536 4.94298 4.94469 5.05112 5.11894 5.13543 5.15044 5.26065 5.26809 5.35119 5.53670 5.56680 5.90263 6.21133 6.44751 6.60880 7.11445 7.83821 8.28731 9.05963 Molecular weight = 365.08amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.002212 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.064126 B =12654.315968 C =14055.495882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.078 4.078 3 Si 1.115 2.885 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.351 4.351 8 H 0.052 0.948 9 N -0.616 5.616 10 C 0.157 3.843 11 C -0.107 4.107 12 C 0.006 3.994 13 C 0.087 3.913 14 C -0.239 4.239 15 C 0.122 3.878 16 C -0.028 4.028 17 C -0.063 4.063 18 C -0.094 4.094 19 C -0.021 4.021 20 Cl -0.048 7.048 21 C -0.099 4.099 22 C -0.025 4.025 23 Cl -0.056 7.056 24 N -0.461 5.461 25 H 0.443 0.557 26 N -0.306 5.306 27 C -0.103 4.103 28 C 0.144 3.856 29 H 0.253 0.747 30 H 0.049 0.951 31 H 0.001 0.999 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.160 0.840 36 H 0.165 0.835 37 H 0.171 0.829 38 H 0.162 0.838 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.013 0.987 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.485 -17.112 22.613 30.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.274 4.274 3 Si 0.940 3.060 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.198 1.198 7 C -0.481 4.481 8 H 0.070 0.930 9 N -0.341 5.341 10 C 0.031 3.969 11 C -0.146 4.146 12 C -0.015 4.015 13 C -0.078 4.078 14 C -0.268 4.268 15 C -0.007 4.007 16 C -0.031 4.031 17 C -0.083 4.083 18 C -0.112 4.112 19 C -0.048 4.048 20 Cl -0.019 7.019 21 C -0.118 4.118 22 C -0.053 4.053 23 Cl -0.027 7.027 24 N -0.172 5.172 25 H 0.290 0.710 26 N -0.129 5.129 27 C -0.143 4.143 28 C 0.019 3.981 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.019 0.981 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.178 0.822 36 H 0.182 0.818 37 H 0.188 0.812 38 H 0.179 0.821 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.031 0.969 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.649 -16.559 22.245 29.362 hybrid contribution -0.141 -1.626 0.198 1.644 sum 9.508 -18.185 22.443 30.410 Atomic orbital electron populations 1.70873 1.07618 1.29402 1.50821 1.27177 0.96583 1.04812 0.98781 0.82874 0.74167 0.72120 0.76866 1.21222 1.21709 1.19837 1.20231 0.97122 0.89741 1.40960 0.93024 1.44359 1.46048 1.01927 1.41796 1.20725 0.89680 0.98140 0.88372 1.21804 1.01590 0.93680 0.97562 1.19346 0.98675 0.92398 0.91032 1.22191 0.97057 0.91773 0.96748 1.21481 1.09648 1.00371 0.95278 1.19446 0.98059 0.89280 0.93880 1.18053 0.95690 1.00250 0.89114 1.21419 0.91633 0.96608 0.98597 1.21417 1.01579 0.97811 0.90395 1.21010 0.94282 1.00490 0.89010 1.98413 1.77580 1.97289 1.28608 1.20953 0.93888 1.00270 0.96683 1.20916 0.89767 0.99544 0.95028 1.98404 1.30371 1.76619 1.97273 1.46703 1.42808 1.11983 1.15709 0.71041 1.77256 1.21855 1.12913 1.00911 1.21810 0.97276 0.99361 0.95827 1.21030 0.97272 0.85310 0.94516 0.93664 0.93226 0.98103 0.91553 0.91450 0.91382 0.82216 0.81792 0.81191 0.82083 0.91114 0.91835 0.96867 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.84 12.40 21.65 0.27 -57.57 16 2 C -0.08 -4.41 4.69 84.86 0.40 -4.01 16 3 Si 1.12 50.62 29.99 68.60 2.06 52.68 16 4 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.35 -19.57 9.49 84.03 0.80 -18.77 16 8 H 0.05 2.87 7.94 -2.91 -0.02 2.84 16 9 N -0.62 -30.99 2.86 -699.94 -2.00 -32.99 16 10 C 0.16 7.42 4.66 86.22 0.40 7.82 16 11 C -0.11 -3.94 4.90 30.53 0.15 -3.79 16 12 C 0.01 0.21 2.61 -11.51 -0.03 0.18 16 13 C 0.09 2.65 6.10 43.00 0.26 2.91 16 14 C -0.24 -6.21 9.69 22.20 0.22 -5.99 16 15 C 0.12 2.72 6.24 40.66 0.25 2.97 16 16 C -0.03 -0.48 5.83 -20.06 -0.12 -0.60 16 17 C -0.06 -0.82 9.61 22.50 0.22 -0.60 16 18 C -0.09 -0.96 9.81 22.26 0.22 -0.74 16 19 C -0.02 -0.24 6.32 22.37 0.14 -0.10 16 20 Cl -0.05 -0.52 28.95 -2.72 -0.08 -0.60 16 21 C -0.10 -1.23 9.60 22.28 0.21 -1.02 16 22 C -0.02 -0.39 6.35 22.57 0.14 -0.24 16 23 Cl -0.06 -0.92 26.20 -2.72 -0.07 -0.99 16 24 N -0.46 -10.96 6.65 -48.61 -0.32 -11.29 16 25 H 0.44 8.60 7.60 -213.34 -1.62 6.98 16 26 N -0.31 -9.23 12.68 -47.58 -0.60 -9.83 16 27 C -0.10 -3.54 5.34 30.67 0.16 -3.37 16 28 C 0.14 6.06 6.52 86.36 0.56 6.63 16 29 H 0.25 15.89 6.71 -92.71 -0.62 15.26 16 30 H 0.05 2.65 6.30 -2.39 -0.02 2.64 16 31 H 0.00 0.05 7.87 -2.38 -0.02 0.03 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.07 2.44 7.36 -2.38 -0.02 2.42 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.16 3.80 7.44 -2.91 -0.02 3.78 16 36 H 0.16 1.72 8.03 -2.91 -0.02 1.70 16 37 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 38 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16 Total: -1.00 -67.31 372.81 2.84 -64.47 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -0.40 Total: 14.84 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 3.99 Total: -18.72 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -2.66 Total: -111.68 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.06 Total: 52.68 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.15 Total: -1.59 kcal Total: -67.31 2.84 -64.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020405648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.676 kcal (2) G-P(sol) polarization free energy of solvation -67.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds