Wall clock time and date at job start Tue Mar 31 2020 06:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99983 * 2 1 4 4 C 1.50694 * 109.47472 * 66.04301 * 3 2 1 5 5 H 1.08003 * 119.99765 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00239 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99999 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00102 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47218 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46920 * 119.99698 * 8 6 4 11 11 H 1.48501 * 109.46889 * 239.99607 * 8 6 4 12 12 C 1.46893 * 111.00212 * 236.04270 * 2 1 3 13 13 C 1.50701 * 109.47159 * 288.00174 * 12 2 1 14 14 C 1.35785 * 120.88962 * 105.27273 * 13 12 2 15 15 C 1.41113 * 119.80898 * 179.97438 * 14 13 12 16 16 O 1.21784 * 119.15763 * 180.02562 * 15 14 13 17 17 O 1.34172 * 121.68084 * 0.27914 * 15 14 13 18 18 C 1.35140 * 121.49858 * 359.42234 * 17 15 14 19 19 C 1.38617 * 120.53981 * 180.29032 * 18 17 15 20 20 C 1.39022 * 119.96010 * 180.28550 * 19 18 17 21 21 C 1.48215 * 119.82389 * 180.02562 * 20 19 18 22 22 C 1.39427 * 120.13419 * 309.71463 * 21 20 19 23 23 C 1.37992 * 119.87428 * 179.77219 * 22 21 20 24 24 C 1.38341 * 120.12681 * 0.53104 * 23 22 21 25 25 C 1.38338 * 120.26152 * 359.70066 * 24 23 22 26 26 C 1.37995 * 120.13255 * 0.04267 * 25 24 23 27 27 C 1.40318 * 120.34382 * 359.97179 * 20 19 18 28 28 O 1.35902 * 119.94669 * 180.02562 * 27 20 19 29 29 C 1.37828 * 120.10351 * 0.02562 * 27 20 19 30 30 C 1.39964 * 119.74463 * 0.03487 * 29 27 20 31 31 H 1.09005 * 109.47002 * 186.20749 * 1 2 3 32 32 H 1.08997 * 109.47338 * 306.20406 * 1 2 3 33 33 H 1.08997 * 109.47107 * 66.21145 * 1 2 3 34 34 H 1.08998 * 109.47118 * 186.04917 * 3 2 1 35 35 H 1.08999 * 109.46666 * 306.04068 * 3 2 1 36 36 H 0.96994 * 120.00060 * 180.02562 * 7 6 4 37 37 H 1.09005 * 109.47278 * 168.00217 * 12 2 1 38 38 H 1.08997 * 109.47405 * 48.00385 * 12 2 1 39 39 H 1.07998 * 120.09079 * 359.95554 * 14 13 12 40 40 H 1.07997 * 120.01665 * 0.25541 * 19 18 17 41 41 H 1.08008 * 120.06330 * 0.02562 * 22 21 20 42 42 H 1.08001 * 119.93711 * 180.23333 * 23 22 21 43 43 H 1.07998 * 119.86782 * 179.71943 * 24 23 22 44 44 H 1.07996 * 119.93683 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.06849 * 179.97438 * 26 25 24 46 46 H 0.96693 * 114.00089 * 90.00173 * 28 27 20 47 47 H 1.08008 * 120.12484 * 180.02562 * 29 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0267 3.3495 1.5283 7 7 2.7119 4.0019 0.6148 8 14 1.5828 4.1870 3.1381 9 1 0.8155 3.2444 3.9913 10 1 2.8248 4.5945 3.8428 11 1 0.7550 5.3879 2.8594 12 6 1.9954 -0.7660 -1.1375 13 6 1.7655 -2.2367 -0.9022 14 6 0.7944 -2.9067 -1.5743 15 6 0.5993 -4.2839 -1.3366 16 8 -0.2748 -4.8733 -1.9463 17 8 1.3489 -4.9595 -0.4524 18 6 2.3355 -4.3542 0.2451 19 6 3.1019 -5.0728 1.1494 20 6 4.1099 -4.4366 1.8649 21 6 4.9279 -5.2080 2.8306 22 6 4.3088 -6.0071 3.7909 23 6 5.0757 -6.7267 4.6844 24 6 6.4560 -6.6478 4.6357 25 6 7.0758 -5.8529 3.6882 26 6 6.3195 -5.1328 2.7861 27 6 4.3576 -3.0684 1.6766 28 8 5.3454 -2.4547 2.3799 29 6 3.6008 -2.3458 0.7796 30 6 2.5841 -2.9820 0.0581 31 1 -0.3633 -1.0217 0.1111 32 1 -0.3634 0.6070 0.8292 33 1 -0.3633 0.4145 -0.9403 34 1 3.0796 1.3444 -0.1083 35 1 1.5611 1.9273 -0.8310 36 1 2.9865 4.9180 0.7767 37 1 3.0641 -0.5770 -1.2393 38 1 1.4838 -0.4597 -2.0498 39 1 0.1729 -2.3869 -2.2884 40 1 2.9156 -6.1261 1.2984 41 1 3.2312 -6.0660 3.8328 42 1 4.5973 -7.3490 5.4263 43 1 7.0520 -7.2092 5.3399 44 1 8.1537 -5.7954 3.6547 45 1 6.8045 -4.5122 2.0472 46 1 6.2075 -2.4697 1.9422 47 1 3.7914 -1.2927 0.6341 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020610421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:47 Heat of formation + Delta-G solvation = -36.950465 kcal Electronic energy + Delta-G solvation = -32039.402764 eV Core-core repulsion = 27732.143095 eV Total energy + Delta-G solvation = -4307.259669 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.92934 -40.13341 -38.71571 -37.76318 -37.51481 -35.99352 -34.51707 -32.60269 -32.12243 -31.20661 -30.08655 -28.67501 -28.10482 -27.11247 -24.69980 -24.35314 -23.74429 -22.73676 -21.96925 -21.79371 -20.37588 -19.62383 -18.73881 -17.47432 -17.15641 -16.96590 -16.73722 -16.42690 -15.73494 -15.54226 -15.16236 -15.03150 -14.81777 -14.59246 -14.50025 -14.20218 -13.97526 -13.83872 -13.65036 -13.37909 -13.24289 -12.96384 -12.71865 -12.55244 -12.07833 -12.03812 -11.87671 -11.68526 -11.61723 -11.43899 -11.19340 -10.99796 -10.82773 -10.67545 -10.64108 -10.35504 -10.24344 -9.95109 -9.34493 -9.20424 -9.18750 -8.75288 -8.54303 -8.21096 -7.53432 -6.13300 -4.14896 0.01396 0.80477 1.03846 1.14642 1.54701 2.36248 2.71044 3.25866 3.33970 3.38707 3.44346 3.58554 3.90531 4.06202 4.20955 4.24747 4.36296 4.46956 4.64688 4.69742 4.77922 4.83301 4.97651 5.05671 5.17389 5.23578 5.24270 5.32539 5.36270 5.46472 5.62931 5.65853 5.73162 5.76603 5.78247 5.93059 5.99733 6.04991 6.13681 6.16124 6.20275 6.23640 6.29559 6.36244 6.61880 6.68880 7.04924 7.14216 7.15171 7.44103 7.52877 7.63607 7.85202 7.98995 8.34648 8.92551 9.50261 10.97467 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007408 B = 0.003204 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3779.021733 B = 8735.693953 C =11651.448614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.532 5.532 3 C 0.193 3.807 4 C -0.509 4.509 5 H 0.065 0.935 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.285 1.285 12 C 0.074 3.926 13 C 0.061 3.939 14 C -0.262 4.262 15 C 0.515 3.485 16 O -0.475 6.475 17 O -0.273 6.273 18 C 0.136 3.864 19 C -0.115 4.115 20 C -0.024 4.024 21 C -0.041 4.041 22 C -0.102 4.102 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.095 4.095 27 C 0.096 3.904 28 O -0.480 6.480 29 C -0.052 4.052 30 C -0.119 4.119 31 H 0.045 0.955 32 H 0.081 0.919 33 H 0.017 0.983 34 H 0.032 0.968 35 H -0.005 1.005 36 H 0.262 0.738 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.161 0.839 40 H 0.145 0.855 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.386 0.614 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.505 -19.652 2.015 21.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.256 5.256 3 C 0.069 3.931 4 C -0.547 4.547 5 H 0.083 0.917 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.211 1.211 12 C -0.054 4.054 13 C 0.060 3.940 14 C -0.283 4.283 15 C 0.365 3.635 16 O -0.364 6.364 17 O -0.185 6.185 18 C 0.092 3.908 19 C -0.133 4.133 20 C -0.024 4.024 21 C -0.041 4.041 22 C -0.120 4.120 23 C -0.137 4.137 24 C -0.135 4.135 25 C -0.137 4.137 26 C -0.113 4.113 27 C 0.051 3.949 28 O -0.289 6.289 29 C -0.070 4.070 30 C -0.120 4.120 31 H 0.064 0.936 32 H 0.099 0.901 33 H 0.035 0.965 34 H 0.050 0.950 35 H 0.013 0.987 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.069 0.931 39 H 0.178 0.822 40 H 0.163 0.837 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.242 0.758 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.846 -20.051 2.560 21.683 hybrid contribution -0.172 1.154 -0.249 1.193 sum 7.673 -18.897 2.312 20.526 Atomic orbital electron populations 1.22311 0.88170 1.00135 1.00993 1.62187 1.07653 1.18159 1.37619 1.19806 0.95365 0.80771 0.97161 1.21139 1.35128 0.96915 1.01525 0.91694 1.24963 0.95151 0.97288 0.97011 1.69953 1.38217 1.11505 1.34020 0.86446 0.78248 0.79333 0.83461 1.19605 1.20915 1.21087 1.21254 1.02070 0.87391 0.94703 1.21746 0.88745 0.96386 0.87165 1.22424 1.04066 0.93719 1.08054 1.19175 0.79935 0.87407 0.76999 1.90957 1.29417 1.71385 1.44636 1.83526 1.41057 1.45230 1.48716 1.18881 0.88523 0.90282 0.93163 1.20263 0.95691 1.00720 0.96660 1.18974 0.95454 0.92212 0.95805 1.18553 0.92850 0.97082 0.95608 1.21274 1.00180 0.95867 0.94632 1.21098 0.94004 0.99571 0.99049 1.21237 0.94822 0.98917 0.98559 1.21074 0.99935 0.97192 0.95529 1.21083 0.92473 0.98910 0.98864 1.18228 0.93629 0.88990 0.94079 1.84948 1.19864 1.77862 1.46263 1.21601 0.92471 1.01386 0.91580 1.18883 1.00009 0.91649 1.01466 0.93628 0.90065 0.96481 0.95024 0.98710 0.92870 0.88981 0.93065 0.82164 0.83686 0.85609 0.85773 0.86026 0.85768 0.86126 0.75794 0.82232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.23 60.06 0.55 1.15 16 2 N -0.53 -10.21 4.66 -245.84 -1.15 -11.36 16 3 C 0.19 4.57 4.71 -4.98 -0.02 4.55 16 4 C -0.51 -13.45 8.43 -34.45 -0.29 -13.74 16 5 H 0.06 1.73 7.14 -52.48 -0.37 1.36 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -25.42 13.29 55.43 0.74 -24.68 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 C 0.07 1.13 4.36 -4.98 -0.02 1.11 16 13 C 0.06 0.87 4.87 -102.15 -0.50 0.37 16 14 C -0.26 -3.68 9.23 -39.37 -0.36 -4.04 16 15 C 0.51 8.05 7.89 31.82 0.25 8.30 16 16 O -0.47 -8.60 17.91 -19.59 -0.35 -8.96 16 17 O -0.27 -4.05 9.81 -21.00 -0.21 -4.25 16 18 C 0.14 1.82 6.75 -38.51 -0.26 1.56 16 19 C -0.11 -1.31 9.43 -39.15 -0.37 -1.68 16 20 C -0.02 -0.27 5.49 -104.72 -0.57 -0.84 16 21 C -0.04 -0.42 5.25 -104.91 -0.55 -0.97 16 22 C -0.10 -0.97 9.50 -39.23 -0.37 -1.34 16 23 C -0.12 -0.98 10.03 -39.63 -0.40 -1.38 16 24 C -0.12 -0.90 10.04 -39.51 -0.40 -1.29 16 25 C -0.12 -0.93 10.03 -39.63 -0.40 -1.32 16 26 C -0.10 -0.83 8.76 -39.22 -0.34 -1.18 16 27 C 0.10 1.18 6.59 -38.95 -0.26 0.92 16 28 O -0.48 -5.56 12.08 -19.43 -0.23 -5.79 16 29 C -0.05 -0.71 9.37 -39.09 -0.37 -1.07 16 30 C -0.12 -1.65 5.88 -104.97 -0.62 -2.27 16 31 H 0.04 0.75 7.26 -51.93 -0.38 0.37 16 32 H 0.08 1.62 6.71 -51.93 -0.35 1.27 16 33 H 0.02 0.29 8.07 -51.93 -0.42 -0.12 16 34 H 0.03 0.78 7.86 -51.93 -0.41 0.37 16 35 H 0.00 -0.13 8.12 -51.93 -0.42 -0.55 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.09 1.33 7.12 -51.93 -0.37 0.96 16 38 H 0.05 0.74 7.83 -51.93 -0.41 0.34 16 39 H 0.16 2.03 8.01 -52.49 -0.42 1.61 16 40 H 0.15 1.39 8.03 -52.49 -0.42 0.97 16 41 H 0.13 1.09 8.04 -52.48 -0.42 0.67 16 42 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.12 0.81 7.07 -52.49 -0.37 0.44 16 46 H 0.39 2.57 8.21 45.56 0.37 2.94 16 47 H 0.16 2.35 6.85 -52.48 -0.36 1.99 16 LS Contribution 398.71 15.07 6.01 6.01 Total: -1.00 -32.14 398.71 -10.75 -42.89 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -5.15 Total: 1.86 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -5.39 Total: -11.71 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: -0.41 Total: -36.04 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.79 Total: -19.00 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.14 -10.75 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020610421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.940 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds