Wall clock time and date at job start Tue Mar 31 2020 06:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 110.99983 * 2 1 4 4 C 1.50694 * 109.47472 * 66.04301 * 3 2 1 5 5 H 1.08003 * 119.99765 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00239 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99999 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 120.00102 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47218 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46920 * 119.99698 * 8 6 4 11 11 H 1.48501 * 109.46889 * 239.99607 * 8 6 4 12 12 C 1.46893 * 111.00212 * 236.04270 * 2 1 3 13 13 C 1.50701 * 109.47159 * 288.00174 * 12 2 1 14 14 C 1.35785 * 120.88962 * 105.27273 * 13 12 2 15 15 C 1.41113 * 119.80898 * 179.97438 * 14 13 12 16 16 O 1.21784 * 119.15763 * 180.02562 * 15 14 13 17 17 O 1.34172 * 121.68084 * 0.27914 * 15 14 13 18 18 C 1.35140 * 121.49858 * 359.42234 * 17 15 14 19 19 C 1.38617 * 120.53981 * 180.29032 * 18 17 15 20 20 C 1.39022 * 119.96010 * 180.28550 * 19 18 17 21 21 C 1.48215 * 119.82389 * 180.02562 * 20 19 18 22 22 C 1.39427 * 120.13419 * 309.71463 * 21 20 19 23 23 C 1.37992 * 119.87428 * 179.77219 * 22 21 20 24 24 C 1.38341 * 120.12681 * 0.53104 * 23 22 21 25 25 C 1.38338 * 120.26152 * 359.70066 * 24 23 22 26 26 C 1.37995 * 120.13255 * 0.04267 * 25 24 23 27 27 C 1.40318 * 120.34382 * 359.97179 * 20 19 18 28 28 O 1.35902 * 119.94669 * 180.02562 * 27 20 19 29 29 C 1.37828 * 120.10351 * 0.02562 * 27 20 19 30 30 C 1.39964 * 119.74463 * 0.03487 * 29 27 20 31 31 H 1.09005 * 109.47002 * 186.20749 * 1 2 3 32 32 H 1.08997 * 109.47338 * 306.20406 * 1 2 3 33 33 H 1.08997 * 109.47107 * 66.21145 * 1 2 3 34 34 H 1.08998 * 109.47118 * 186.04917 * 3 2 1 35 35 H 1.08999 * 109.46666 * 306.04068 * 3 2 1 36 36 H 0.96994 * 120.00060 * 180.02562 * 7 6 4 37 37 H 1.09005 * 109.47278 * 168.00217 * 12 2 1 38 38 H 1.08997 * 109.47405 * 48.00385 * 12 2 1 39 39 H 1.07998 * 120.09079 * 359.95554 * 14 13 12 40 40 H 1.07997 * 120.01665 * 0.25541 * 19 18 17 41 41 H 1.08008 * 120.06330 * 0.02562 * 22 21 20 42 42 H 1.08001 * 119.93711 * 180.23333 * 23 22 21 43 43 H 1.07998 * 119.86782 * 179.71943 * 24 23 22 44 44 H 1.07996 * 119.93683 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.06849 * 179.97438 * 26 25 24 46 46 H 0.96693 * 114.00089 * 90.00173 * 28 27 20 47 47 H 1.08008 * 120.12484 * 180.02562 * 29 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0267 3.3495 1.5283 7 7 2.7119 4.0019 0.6148 8 14 1.5828 4.1870 3.1381 9 1 0.8155 3.2444 3.9913 10 1 2.8248 4.5945 3.8428 11 1 0.7550 5.3879 2.8594 12 6 1.9954 -0.7660 -1.1375 13 6 1.7655 -2.2367 -0.9022 14 6 0.7944 -2.9067 -1.5743 15 6 0.5993 -4.2839 -1.3366 16 8 -0.2748 -4.8733 -1.9463 17 8 1.3489 -4.9595 -0.4524 18 6 2.3355 -4.3542 0.2451 19 6 3.1019 -5.0728 1.1494 20 6 4.1099 -4.4366 1.8649 21 6 4.9279 -5.2080 2.8306 22 6 4.3088 -6.0071 3.7909 23 6 5.0757 -6.7267 4.6844 24 6 6.4560 -6.6478 4.6357 25 6 7.0758 -5.8529 3.6882 26 6 6.3195 -5.1328 2.7861 27 6 4.3576 -3.0684 1.6766 28 8 5.3454 -2.4547 2.3799 29 6 3.6008 -2.3458 0.7796 30 6 2.5841 -2.9820 0.0581 31 1 -0.3633 -1.0217 0.1111 32 1 -0.3634 0.6070 0.8292 33 1 -0.3633 0.4145 -0.9403 34 1 3.0796 1.3444 -0.1083 35 1 1.5611 1.9273 -0.8310 36 1 2.9865 4.9180 0.7767 37 1 3.0641 -0.5770 -1.2393 38 1 1.4838 -0.4597 -2.0498 39 1 0.1729 -2.3869 -2.2884 40 1 2.9156 -6.1261 1.2984 41 1 3.2312 -6.0660 3.8328 42 1 4.5973 -7.3490 5.4263 43 1 7.0520 -7.2092 5.3399 44 1 8.1537 -5.7954 3.6547 45 1 6.8045 -4.5122 2.0472 46 1 6.2075 -2.4697 1.9422 47 1 3.7914 -1.2927 0.6341 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020610421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:43 Heat of formation + Delta-G solvation = -54.779098 kcal Electronic energy + Delta-G solvation = -32040.175871 eV Core-core repulsion = 27732.143095 eV Total energy + Delta-G solvation = -4308.032776 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 3.97 seconds Orbital eigenvalues (eV) -43.05536 -41.02291 -39.57200 -38.92493 -38.83699 -37.08103 -35.82240 -34.43771 -33.08764 -31.81901 -31.04912 -29.79058 -29.53767 -28.68240 -26.27254 -25.41354 -24.79133 -23.59183 -23.11211 -22.76540 -21.81510 -20.58664 -19.77040 -18.65314 -18.43648 -18.06083 -17.91978 -17.68716 -16.87850 -16.70911 -16.35413 -16.12496 -16.02370 -15.83024 -15.53868 -15.46676 -15.27638 -14.95385 -14.48572 -14.30683 -14.25383 -14.03698 -13.89164 -13.78567 -13.56273 -13.28201 -13.20868 -13.02229 -12.81323 -12.60886 -12.55285 -12.35557 -12.30608 -12.00033 -11.97498 -11.68159 -11.45101 -11.37136 -11.19109 -10.60953 -10.06813 -9.82124 -9.70631 -9.17303 -9.10571 -8.20331 -6.28217 -1.02922 -0.20822 0.18076 0.53003 0.61762 1.24603 1.40494 1.42935 1.54516 1.62284 2.38693 2.44927 2.88895 2.90657 3.05313 3.09197 3.13689 3.25572 3.40230 3.55940 3.85896 3.99258 4.07358 4.13522 4.18638 4.24749 4.32662 4.41875 4.52233 4.56109 4.57484 4.59718 4.68495 4.70968 4.74301 4.88874 4.97295 5.02940 5.07568 5.16228 5.19393 5.20745 5.28682 5.30598 5.59083 5.60692 5.63675 5.64709 5.99202 6.02508 6.09041 6.20733 6.27651 6.51795 6.77065 6.86684 7.41079 8.90417 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.007408 B = 0.003204 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3779.021733 B = 8735.693953 C =11651.448614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.537 5.537 3 C 0.210 3.790 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.008 3.992 7 N -0.930 5.930 8 Si 0.959 3.041 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.280 1.280 12 C 0.077 3.923 13 C 0.067 3.933 14 C -0.257 4.257 15 C 0.516 3.484 16 O -0.507 6.507 17 O -0.276 6.276 18 C 0.125 3.875 19 C -0.107 4.107 20 C -0.013 4.013 21 C -0.064 4.064 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.102 4.102 27 C 0.102 3.898 28 O -0.492 6.492 29 C -0.065 4.065 30 C -0.129 4.129 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.024 0.976 34 H 0.017 0.983 35 H -0.029 1.029 36 H 0.264 0.736 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.175 0.825 40 H 0.164 0.836 41 H 0.128 0.872 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.136 0.864 46 H 0.407 0.593 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.569 -20.995 3.447 23.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.261 5.261 3 C 0.084 3.916 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.190 4.190 7 N -0.570 5.570 8 Si 0.785 3.215 9 H -0.192 1.192 10 H -0.205 1.205 11 H -0.206 1.206 12 C -0.051 4.051 13 C 0.065 3.935 14 C -0.277 4.277 15 C 0.368 3.632 16 O -0.398 6.398 17 O -0.188 6.188 18 C 0.081 3.919 19 C -0.125 4.125 20 C -0.014 4.014 21 C -0.064 4.064 22 C -0.134 4.134 23 C -0.145 4.145 24 C -0.136 4.136 25 C -0.142 4.142 26 C -0.120 4.120 27 C 0.057 3.943 28 O -0.305 6.305 29 C -0.083 4.083 30 C -0.130 4.130 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.035 0.965 35 H -0.011 1.011 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.082 0.918 39 H 0.192 0.808 40 H 0.182 0.818 41 H 0.146 0.854 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.165 0.835 45 H 0.154 0.846 46 H 0.267 0.733 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.932 -21.409 3.995 23.538 hybrid contribution -0.353 1.473 -0.605 1.631 sum 8.578 -19.936 3.390 21.966 Atomic orbital electron populations 1.22265 0.87501 1.00942 1.00509 1.62014 1.08268 1.15821 1.39990 1.19429 0.94286 0.82748 0.95117 1.21435 1.34672 0.97296 1.02374 0.92278 1.25738 0.95140 0.98041 1.00081 1.70052 1.39318 1.11890 1.35781 0.85484 0.78049 0.78284 0.79720 1.19206 1.20466 1.20617 1.21250 1.02524 0.87547 0.93770 1.21576 0.88924 0.95543 0.87450 1.22448 1.04046 0.92997 1.08233 1.19306 0.79533 0.87709 0.76681 1.90939 1.30864 1.71997 1.46023 1.83486 1.41274 1.45442 1.48614 1.19044 0.88764 0.90289 0.93818 1.20486 0.94927 1.01504 0.95583 1.19086 0.95056 0.91812 0.95416 1.18619 0.93515 0.98142 0.96147 1.21438 1.00622 0.96251 0.95080 1.21381 0.94483 0.99499 0.99100 1.21615 0.94898 0.98499 0.98619 1.21415 1.01180 0.96614 0.95017 1.21341 0.92023 0.99185 0.99467 1.18264 0.93521 0.89291 0.93269 1.84883 1.20988 1.77873 1.46729 1.21481 0.93276 1.00820 0.92721 1.18892 1.00348 0.91973 1.01788 0.91686 0.92107 0.95775 0.96499 1.01129 0.92712 0.88328 0.91789 0.80810 0.81840 0.85435 0.83948 0.83695 0.83499 0.84640 0.73327 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.31 9.23 127.69 1.18 2.49 16 2 N -0.54 -20.70 4.66 -931.69 -4.34 -25.04 16 3 C 0.21 10.13 4.71 85.55 0.40 10.53 16 4 C -0.52 -27.82 8.43 25.60 0.22 -27.60 16 5 H 0.06 3.18 7.14 -2.91 -0.02 3.16 16 6 C 0.01 0.46 5.46 84.65 0.46 0.92 16 7 N -0.93 -53.27 13.29 21.45 0.28 -52.98 16 8 Si 0.96 43.16 29.54 68.60 2.03 45.19 16 9 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 C 0.08 2.32 4.36 85.56 0.37 2.70 16 13 C 0.07 1.86 4.87 -18.27 -0.09 1.77 16 14 C -0.26 -7.00 9.23 22.41 0.21 -6.80 16 15 C 0.52 15.94 7.89 68.53 0.54 16.48 16 16 O -0.51 -18.33 17.91 19.00 0.34 -17.99 16 17 O -0.28 -8.05 9.81 13.95 0.14 -7.91 16 18 C 0.12 3.26 6.75 22.96 0.16 3.41 16 19 C -0.11 -2.32 9.43 22.55 0.21 -2.11 16 20 C -0.01 -0.28 5.49 -19.93 -0.11 -0.39 16 21 C -0.06 -1.21 5.25 -20.05 -0.11 -1.32 16 22 C -0.12 -2.03 9.50 22.50 0.21 -1.82 16 23 C -0.13 -1.80 10.03 22.24 0.22 -1.57 16 24 C -0.12 -1.48 10.04 22.32 0.22 -1.25 16 25 C -0.12 -1.59 10.03 22.24 0.22 -1.37 16 26 C -0.10 -1.57 8.76 22.50 0.20 -1.37 16 27 C 0.10 2.42 6.59 22.68 0.15 2.57 16 28 O -0.49 -10.85 12.08 -92.45 -1.12 -11.97 16 29 C -0.06 -1.75 9.37 22.59 0.21 -1.53 16 30 C -0.13 -3.53 5.88 -20.09 -0.12 -3.65 16 31 H 0.06 2.09 7.26 -2.38 -0.02 2.07 16 32 H 0.06 2.44 6.71 -2.39 -0.02 2.42 16 33 H 0.02 0.83 8.07 -2.39 -0.02 0.81 16 34 H 0.02 0.86 7.86 -2.39 -0.02 0.84 16 35 H -0.03 -1.52 8.12 -2.39 -0.02 -1.54 16 36 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 37 H 0.10 2.86 7.12 -2.38 -0.02 2.85 16 38 H 0.06 1.80 7.83 -2.39 -0.02 1.78 16 39 H 0.17 4.19 8.01 -2.91 -0.02 4.17 16 40 H 0.16 2.89 8.03 -2.91 -0.02 2.86 16 41 H 0.13 2.07 8.04 -2.91 -0.02 2.04 16 42 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 43 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 44 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 45 H 0.14 1.53 7.07 -2.91 -0.02 1.51 16 46 H 0.41 4.83 8.21 -74.06 -0.61 4.22 16 47 H 0.14 4.35 6.85 -2.91 -0.02 4.33 16 Total: -1.00 -68.85 398.71 2.51 -66.34 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.41 Total: 14.28 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 4.77 Total: -9.91 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -4.06 Total: -78.03 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -0.64 Total: -37.87 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -68.85 2.51 -66.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020610421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.559 kcal (2) G-P(sol) polarization free energy of solvation -68.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.97 seconds