Wall clock time and date at job start Tue Mar 31 2020 06:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39323 * 119.52150 * 2 1 4 4 C 1.36234 * 121.07794 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.20948 * 180.02562 * 4 3 2 6 6 C 1.40274 * 119.58772 * 0.04029 * 4 3 2 7 7 N 1.33874 * 121.96957 * 180.27452 * 6 4 3 8 8 C 1.31819 * 120.21029 * 180.24317 * 7 6 4 9 9 N 1.38687 * 118.67231 * 179.73014 * 8 7 6 10 10 C 1.36986 * 119.99636 * 179.73273 * 9 8 7 11 11 N 1.31912 * 118.70520 * 0.02562 * 10 9 8 12 12 C 1.32276 * 122.34133 * 180.02562 * 11 10 9 13 13 C 1.50700 * 120.24863 * 180.02562 * 12 11 10 14 14 C 1.40675 * 119.50459 * 359.97438 * 12 11 10 15 15 C 1.40619 * 121.15749 * 179.97438 * 14 12 11 16 16 H 1.08012 * 119.99624 * 324.52334 * 15 14 12 17 17 C 1.39892 * 120.00751 * 144.52741 * 15 14 12 18 18 N 1.30973 * 119.99469 * 339.38907 * 17 15 14 19 19 Si 1.86801 * 120.00513 * 159.38841 * 17 15 14 20 20 H 1.48500 * 109.46930 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46985 * 119.99913 * 19 17 15 22 22 H 1.48500 * 109.46806 * 239.99814 * 19 17 15 23 23 C 1.47443 * 117.69021 * 0.02562 * 14 12 11 24 24 O 1.21756 * 121.09395 * 180.02562 * 23 14 12 25 25 N 1.35159 * 117.81117 * 359.97438 * 23 14 12 26 26 H 0.97001 * 119.96695 * 179.72400 * 25 23 14 27 27 N 1.33150 * 122.64974 * 359.45079 * 8 7 6 28 28 C 1.31631 * 121.57061 * 0.27620 * 27 8 7 29 29 C 1.50703 * 120.77126 * 179.97438 * 28 27 8 30 30 C 1.40756 * 118.46298 * 359.97438 * 28 27 8 31 31 C 1.36254 * 119.52053 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47437 * 269.97845 * 1 2 3 33 33 H 1.09006 * 109.47174 * 29.98333 * 1 2 3 34 34 H 1.09004 * 109.46918 * 149.97829 * 1 2 3 35 35 H 1.08000 * 119.46417 * 359.97438 * 3 2 1 36 36 H 1.09000 * 109.46698 * 90.00141 * 5 4 3 37 37 H 1.08995 * 109.47429 * 209.99918 * 5 4 3 38 38 H 1.09000 * 109.47177 * 330.00241 * 5 4 3 39 39 H 0.96997 * 120.00321 * 359.72945 * 9 8 7 40 40 H 1.08996 * 109.47069 * 269.97641 * 13 12 11 41 41 H 1.09005 * 109.47087 * 29.97165 * 13 12 11 42 42 H 1.09004 * 109.47341 * 149.97318 * 13 12 11 43 43 H 0.96993 * 119.99687 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.47020 * 89.99615 * 29 28 27 45 45 H 1.08993 * 109.47571 * 209.99761 * 29 28 27 46 46 H 1.08997 * 109.46469 * 330.00120 * 29 28 27 47 47 H 1.07993 * 120.25401 * 0.02613 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1935 1.2123 0.0000 4 6 3.5553 1.2494 0.0005 5 6 4.2779 2.5718 0.0011 6 6 4.2808 0.0488 0.0002 7 7 5.6194 0.0295 0.0061 8 6 6.2662 -1.1191 0.0008 9 7 7.6530 -1.1018 0.0015 10 6 8.3525 -2.2796 0.0015 11 7 7.6813 -3.4152 0.0004 12 6 8.2834 -4.5930 0.0009 13 6 7.4697 -5.8615 -0.0010 14 6 9.6889 -4.6526 0.0021 15 6 10.3647 -5.8858 0.0032 16 1 9.9558 -6.7252 0.5461 17 6 11.5667 -6.0254 -0.6987 18 7 11.8639 -5.1883 -1.6612 19 14 12.7478 -7.4056 -0.2634 20 1 12.1825 -8.2077 0.8512 21 1 12.9481 -8.2779 -1.4484 22 1 14.0514 -6.8287 0.1526 23 6 10.4288 -3.3773 0.0034 24 8 11.6462 -3.3566 0.0040 25 7 9.7112 -2.2319 0.0028 26 1 10.1661 -1.3752 0.0076 27 7 5.6418 -2.2951 0.0002 28 6 4.3281 -2.3779 -0.0004 29 6 3.6401 -3.7187 -0.0016 30 6 3.5808 -1.1852 0.0002 31 6 2.1783 -1.1857 -0.0005 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3634 0.8902 -0.5136 34 1 -0.3633 -0.8898 -0.5142 35 1 1.6370 2.1380 -0.0004 36 1 4.4517 2.8903 1.0289 37 1 5.2333 2.4640 -0.5124 38 1 3.6713 3.3175 -0.5128 39 1 8.1275 -0.2558 0.0018 40 1 7.2722 -6.1679 1.0262 41 1 6.5250 -5.6864 -0.5159 42 1 8.0233 -6.6475 -0.5147 43 1 12.6975 -5.2849 -2.1476 44 1 3.4739 -4.0427 1.0258 45 1 2.6826 -3.6354 -0.5156 46 1 4.2663 -4.4478 -0.5156 47 1 1.6347 -2.1188 -0.0014 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020673257.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:55 Heat of formation + Delta-G solvation = 88.337911 kcal Electronic energy + Delta-G solvation = -32337.394152 eV Core-core repulsion = 28100.152897 eV Total energy + Delta-G solvation = -4237.241255 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.23293 -39.81559 -38.27615 -36.58004 -35.31854 -34.81666 -33.97256 -32.72648 -32.24258 -31.35004 -29.81017 -28.98938 -27.66703 -27.18381 -26.52878 -24.69504 -23.71334 -22.92703 -21.67586 -20.95826 -20.28322 -18.53991 -18.40160 -17.51231 -16.74058 -16.48580 -16.28593 -15.66541 -15.39573 -15.20616 -14.96378 -14.41134 -14.29796 -13.79747 -13.70864 -13.60599 -13.33638 -13.21611 -13.10459 -13.00577 -12.67309 -12.47601 -12.30318 -12.06671 -12.03713 -11.91332 -11.69070 -11.61451 -11.51697 -11.25813 -11.23938 -11.16059 -10.74008 -10.50744 -10.37757 -10.35167 -9.71137 -9.40297 -9.03783 -8.80930 -8.67381 -8.62014 -7.95764 -7.71405 -7.09044 -6.63669 -4.19240 0.45911 1.01418 2.02601 2.31387 2.81076 3.01931 3.07869 3.10959 3.16352 3.59226 3.87303 4.16459 4.32643 4.36957 4.48032 4.58933 4.64598 4.71972 4.84875 5.11259 5.14015 5.33323 5.37174 5.41717 5.43181 5.54295 5.58385 5.67483 5.68153 5.73807 5.82091 5.85478 5.89373 6.00596 6.09901 6.21070 6.35314 6.43466 6.49211 6.71265 6.78141 6.79816 6.87847 6.90189 6.95877 7.09313 7.44264 7.48622 7.60188 7.90460 7.98481 8.25293 8.52274 8.59110 8.71304 9.42871 9.72292 10.02121 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.020516 B = 0.002391 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.490424 B =11707.782391 C =12914.283921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.120 4.120 3 C -0.079 4.079 4 C -0.086 4.086 5 C -0.101 4.101 6 C 0.206 3.794 7 N -0.579 5.579 8 C 0.574 3.426 9 N -0.599 5.599 10 C 0.396 3.604 11 N -0.422 5.422 12 C -0.071 4.071 13 C -0.044 4.044 14 C -0.007 4.007 15 C -0.395 4.395 16 H 0.095 0.905 17 C 0.074 3.926 18 N -0.735 5.735 19 Si 0.913 3.087 20 H -0.257 1.257 21 H -0.273 1.273 22 H -0.270 1.270 23 C 0.530 3.470 24 O -0.532 6.532 25 N -0.642 5.642 26 H 0.385 0.615 27 N -0.469 5.469 28 C 0.242 3.758 29 C -0.106 4.106 30 C -0.203 4.203 31 C -0.064 4.064 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.124 0.876 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.419 0.581 40 H 0.037 0.963 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.286 0.714 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.293 8.293 1.799 20.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.121 4.121 3 C -0.100 4.100 4 C -0.088 4.088 5 C -0.158 4.158 6 C 0.076 3.924 7 N -0.305 5.305 8 C 0.217 3.783 9 N -0.231 5.231 10 C 0.050 3.950 11 N -0.144 5.144 12 C -0.196 4.196 13 C -0.102 4.102 14 C -0.017 4.017 15 C -0.424 4.424 16 H 0.113 0.887 17 C -0.151 4.151 18 N -0.356 5.356 19 Si 0.737 3.263 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.195 1.195 23 C 0.324 3.676 24 O -0.408 6.408 25 N -0.291 5.291 26 H 0.220 0.780 27 N -0.185 5.185 28 C 0.078 3.922 29 C -0.164 4.164 30 C -0.210 4.210 31 C -0.084 4.084 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.142 0.858 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.256 0.744 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.111 0.889 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.067 7.991 1.596 18.913 hybrid contribution 1.184 0.525 0.157 1.305 sum -15.883 8.516 1.753 18.107 Atomic orbital electron populations 1.20741 0.91128 1.02580 1.02077 1.19498 0.96114 0.92913 1.03551 1.20652 0.93131 0.97614 0.98625 1.19342 0.93030 0.93934 1.02445 1.20589 1.00718 0.92292 1.02174 1.18307 0.88084 0.92252 0.93771 1.68004 1.08270 1.27574 1.26683 1.18915 0.85529 0.84642 0.89241 1.40276 1.01426 1.06798 1.74575 1.17556 0.78143 0.86595 1.12680 1.67032 1.35312 0.95370 1.16706 1.20342 0.89895 0.90758 1.18629 1.19898 0.97489 0.93468 0.99332 1.20189 0.91948 0.91627 0.97899 1.19292 1.03454 0.96257 1.23389 0.88709 1.25986 0.98159 0.97425 0.93531 1.69772 1.22283 1.31132 1.12411 0.86167 0.80252 0.80233 0.79633 1.18075 1.19859 1.19525 1.19284 0.87309 0.83372 0.77586 1.90730 1.12772 1.85751 1.51543 1.44088 1.05487 1.10794 1.68773 0.77999 1.68477 1.08751 1.25849 1.15473 1.22143 0.88885 0.94771 0.86429 1.20795 0.99703 0.92145 1.03710 1.19254 0.95599 0.95224 1.10904 1.20719 0.92004 0.97964 0.97709 0.91477 0.91790 0.91660 0.85782 0.91509 0.90556 0.92104 0.74373 0.94466 0.93598 0.92221 0.90330 0.89525 0.90478 0.88946 0.85283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.98 36.00 0.36 -0.37 16 2 C -0.12 -1.19 5.85 -104.94 -0.61 -1.80 16 3 C -0.08 -0.82 9.23 -39.90 -0.37 -1.19 16 4 C -0.09 -1.09 5.88 -104.58 -0.62 -1.70 16 5 C -0.10 -1.07 9.82 36.00 0.35 -0.72 16 6 C 0.21 3.20 6.59 -84.82 -0.56 2.64 16 7 N -0.58 -9.88 9.60 -11.87 -0.11 -10.00 16 8 C 0.57 10.72 8.36 -322.41 -2.70 8.02 16 9 N -0.60 -10.92 5.48 -14.59 -0.08 -11.00 16 10 C 0.40 8.53 8.42 -320.98 -2.70 5.82 16 11 N -0.42 -9.77 7.27 -9.34 -0.07 -9.83 16 12 C -0.07 -1.72 6.89 -81.48 -0.56 -2.28 16 13 C -0.04 -0.91 9.68 36.01 0.35 -0.56 16 14 C -0.01 -0.18 5.55 -104.33 -0.58 -0.76 16 15 C -0.40 -10.14 7.81 -38.06 -0.30 -10.43 16 16 H 0.10 2.27 7.42 -52.48 -0.39 1.88 16 17 C 0.07 1.87 4.62 -17.30 -0.08 1.79 16 18 N -0.74 -19.55 11.17 55.55 0.62 -18.93 16 19 Si 0.91 18.77 29.61 -169.99 -5.03 13.74 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 C 0.53 13.81 7.48 -12.34 -0.09 13.72 16 24 O -0.53 -15.07 15.07 5.14 0.08 -14.99 16 25 N -0.64 -14.01 5.30 -13.71 -0.07 -14.08 16 26 H 0.39 7.10 8.80 -40.82 -0.36 6.74 16 27 N -0.47 -8.86 7.39 -9.69 -0.07 -8.93 16 28 C 0.24 3.73 6.90 -81.73 -0.56 3.17 16 29 C -0.11 -1.21 9.79 36.01 0.35 -0.86 16 30 C -0.20 -2.92 5.74 -106.80 -0.61 -3.53 16 31 C -0.06 -0.70 8.94 -39.54 -0.35 -1.05 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.36 8.08 -51.93 -0.42 -0.05 16 34 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.91 7.61 -51.93 -0.39 0.52 16 38 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 39 H 0.42 6.30 8.80 -40.82 -0.36 5.94 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.22 7.03 -51.93 -0.37 0.85 16 43 H 0.29 6.98 8.30 -40.82 -0.34 6.64 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.08 0.65 6.56 -51.93 -0.34 0.31 16 46 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.13 1.08 6.52 -52.49 -0.34 0.74 16 LS Contribution 391.92 15.07 5.91 5.91 Total: -1.00 -32.89 391.92 -14.02 -46.91 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.90 Total: 11.31 kcal Atomic # 6 Polarization: 19.18 SS G_CDS: -9.28 Total: 9.90 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: 0.21 Total: -72.77 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.08 Total: -14.99 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.89 -14.02 -46.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020673257.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.243 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds