Wall clock time and date at job start Tue Mar 31 2020 06:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36276 * 119.46343 * 2 1 4 4 C 1.40224 * 119.58968 * 180.02562 * 3 2 1 5 5 N 1.33884 * 121.97065 * 180.02562 * 4 3 2 6 6 C 1.31814 * 120.20633 * 179.97438 * 5 4 3 7 7 N 1.38685 * 118.67088 * 180.28415 * 6 5 4 8 8 C 1.36977 * 120.00424 * 179.73692 * 7 6 5 9 9 N 1.31922 * 118.70269 * 359.72755 * 8 7 6 10 10 C 1.32282 * 122.34114 * 179.70517 * 9 8 7 11 11 C 1.50698 * 120.24543 * 180.28815 * 10 9 8 12 12 C 1.40675 * 119.50453 * 0.56182 * 10 9 8 13 13 C 1.40612 * 121.15567 * 179.70861 * 12 10 9 14 14 H 1.08002 * 120.00174 * 324.52474 * 13 12 10 15 15 C 1.39900 * 120.00091 * 144.52371 * 13 12 10 16 16 N 1.30962 * 120.00033 * 339.39200 * 15 13 12 17 17 Si 1.86796 * 120.00336 * 159.39714 * 15 13 12 18 18 H 1.48504 * 109.47374 * 89.99502 * 17 15 13 19 19 H 1.48494 * 109.47267 * 210.00053 * 17 15 13 20 20 H 1.48504 * 109.47062 * 329.99734 * 17 15 13 21 21 C 1.47448 * 117.68872 * 359.72785 * 12 10 9 22 22 O 1.21757 * 121.09091 * 180.02562 * 21 12 10 23 23 N 1.35158 * 117.81510 * 0.02562 * 21 12 10 24 24 H 0.96996 * 119.97229 * 180.02562 * 23 21 12 25 25 N 1.33154 * 122.66297 * 0.02562 * 6 5 4 26 26 C 1.31637 * 121.56729 * 359.97438 * 25 6 5 27 27 C 1.50706 * 120.76404 * 179.97438 * 26 25 6 28 28 C 1.40759 * 118.46803 * 0.02562 * 26 25 6 29 29 C 1.40197 * 122.05636 * 180.02562 * 28 26 25 30 30 C 1.36292 * 119.50126 * 179.97438 * 29 28 26 31 31 C 1.50700 * 119.52249 * 180.02562 * 30 29 28 32 32 H 1.09001 * 109.47441 * 270.02595 * 1 2 3 33 33 H 1.09000 * 109.47200 * 30.02113 * 1 2 3 34 34 H 1.09001 * 109.47371 * 150.02597 * 1 2 3 35 35 H 1.07996 * 120.20274 * 0.02562 * 3 2 1 36 36 H 0.97002 * 119.99421 * 359.73154 * 7 6 5 37 37 H 1.09003 * 109.47209 * 270.27400 * 11 10 9 38 38 H 1.08997 * 109.47064 * 30.27322 * 11 10 9 39 39 H 1.08994 * 109.47395 * 150.27516 * 11 10 9 40 40 H 0.97000 * 120.00176 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.47000 * 90.00309 * 27 26 25 42 42 H 1.09003 * 109.46800 * 209.99810 * 27 26 25 43 43 H 1.08995 * 109.47275 * 330.00162 * 27 26 25 44 44 H 1.07999 * 120.24929 * 359.95690 * 29 28 26 45 45 H 1.09001 * 109.47145 * 89.99568 * 31 30 29 46 46 H 1.08997 * 109.47164 * 210.00380 * 31 30 29 47 47 H 1.09007 * 109.46696 * 330.00200 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1773 1.1865 0.0000 4 6 3.5795 1.1896 -0.0005 5 7 4.2859 2.3269 -0.0001 6 6 5.6035 2.2892 -0.0001 7 7 6.3034 3.4865 0.0065 8 6 7.6731 3.4792 0.0120 9 7 8.3005 2.3187 0.0165 10 6 9.6202 2.2277 0.0163 11 6 10.2879 0.8767 0.0150 12 6 10.3956 3.4015 0.0231 13 6 11.8006 3.3452 0.0292 14 1 12.3073 2.5609 0.5721 15 6 12.5422 4.3050 -0.6679 16 7 11.9815 4.9933 -1.6307 17 14 14.3321 4.6048 -0.2256 18 1 15.1984 3.7093 -1.0336 19 1 14.6817 6.0199 -0.5091 20 1 14.5391 4.3235 1.2178 21 6 9.6839 4.6928 0.0241 22 8 10.2935 5.7467 0.0293 23 7 8.3325 4.6681 0.0189 24 1 7.8327 5.4994 0.0189 25 7 6.2898 1.1482 -0.0011 26 6 5.6838 -0.0204 -0.0016 27 6 6.4786 -1.3009 -0.0033 28 6 4.2765 -0.0465 -0.0017 29 6 3.5545 -1.2482 -0.0017 30 6 2.1920 -1.2127 -0.0012 31 6 1.4155 -2.5042 -0.0006 32 1 -0.3634 0.0005 1.0276 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3634 -0.8902 -0.5134 35 1 1.6318 2.1186 0.0004 36 1 5.8228 4.3291 0.0070 37 1 10.4446 0.5479 1.0424 38 1 9.6532 0.1583 -0.5036 39 1 11.2488 0.9468 -0.4945 40 1 12.4956 5.6591 -2.1138 41 1 6.6710 -1.6105 1.0239 42 1 5.9136 -2.0785 -0.5174 43 1 7.4260 -1.1398 -0.5177 44 1 4.0740 -2.1950 -0.0023 45 1 1.2287 -2.8154 1.0272 46 1 0.4654 -2.3571 -0.5141 47 1 1.9909 -3.2743 -0.5145 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020673260.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:50 Heat of formation + Delta-G solvation = 90.729812 kcal Electronic energy + Delta-G solvation = -32170.791219 eV Core-core repulsion = 27933.653684 eV Total energy + Delta-G solvation = -4237.137534 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.20473 -39.81771 -38.47758 -36.66465 -35.25830 -34.59377 -33.95562 -32.81826 -32.21101 -31.46055 -29.81749 -29.15800 -27.65894 -27.43747 -26.46652 -24.71687 -23.08667 -22.75506 -21.66714 -21.33755 -20.82340 -18.47022 -18.10554 -17.51841 -16.63562 -16.51500 -16.38507 -15.56185 -15.37537 -15.21060 -14.95303 -14.50160 -14.24702 -14.14178 -14.08475 -13.65056 -13.20196 -13.14406 -13.06533 -13.00051 -12.87267 -12.37111 -12.29508 -12.16336 -12.06616 -11.91376 -11.73538 -11.63276 -11.41842 -11.25133 -11.21877 -11.15477 -10.73007 -10.52002 -10.43451 -10.41386 -9.64977 -9.38088 -9.03191 -8.80424 -8.63091 -8.61677 -7.95220 -7.77684 -7.08819 -6.63508 -4.18889 0.46422 1.00077 2.04652 2.32152 2.81693 3.01911 3.06769 3.11100 3.15317 3.59569 3.87417 4.17067 4.33419 4.35800 4.51254 4.58786 4.64369 4.70607 4.80562 4.93922 5.09770 5.22220 5.30358 5.42154 5.44698 5.48877 5.53002 5.57076 5.64342 5.69013 5.76266 5.85709 5.90949 5.99891 6.07016 6.13645 6.22413 6.43584 6.52651 6.71635 6.76905 6.80122 6.87822 6.90455 6.95931 7.09772 7.44993 7.48996 7.61133 7.90969 7.98484 8.25572 8.52606 8.59234 8.72268 9.43276 9.72780 10.02376 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.002252 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.845818 B =12427.880478 C =13469.013236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.041 4.041 3 C -0.123 4.123 4 C 0.209 3.791 5 N -0.585 5.585 6 C 0.576 3.424 7 N -0.599 5.599 8 C 0.395 3.605 9 N -0.422 5.422 10 C -0.072 4.072 11 C -0.044 4.044 12 C -0.007 4.007 13 C -0.395 4.395 14 H 0.095 0.905 15 C 0.074 3.926 16 N -0.735 5.735 17 Si 0.914 3.086 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.258 1.258 21 C 0.530 3.470 22 O -0.532 6.532 23 N -0.642 5.642 24 H 0.385 0.615 25 N -0.470 5.470 26 C 0.243 3.757 27 C -0.107 4.107 28 C -0.210 4.210 29 C -0.053 4.053 30 C -0.123 4.123 31 C -0.112 4.112 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.132 0.868 36 H 0.419 0.581 37 H 0.037 0.963 38 H 0.045 0.955 39 H 0.059 0.941 40 H 0.286 0.714 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.130 0.870 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.081 -12.384 1.737 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.045 4.045 3 C -0.142 4.142 4 C 0.079 3.921 5 N -0.311 5.311 6 C 0.219 3.781 7 N -0.231 5.231 8 C 0.050 3.950 9 N -0.144 5.144 10 C -0.197 4.197 11 C -0.102 4.102 12 C -0.016 4.016 13 C -0.424 4.424 14 H 0.112 0.888 15 C -0.151 4.151 16 N -0.356 5.356 17 Si 0.738 3.262 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.182 1.182 21 C 0.325 3.675 22 O -0.408 6.408 23 N -0.291 5.291 24 H 0.220 0.780 25 N -0.187 5.187 26 C 0.079 3.921 27 C -0.164 4.164 28 C -0.217 4.217 29 C -0.074 4.074 30 C -0.124 4.124 31 C -0.169 4.169 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.149 0.851 36 H 0.256 0.744 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.148 0.852 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.192 -11.485 1.539 19.911 hybrid contribution 0.201 1.386 0.157 1.410 sum -15.991 -10.099 1.696 18.988 Atomic orbital electron populations 1.20944 0.91101 1.03060 1.02582 1.19491 0.96037 0.92231 0.96705 1.20380 0.91197 0.98104 1.04556 1.18445 0.93771 0.86919 0.92991 1.68054 1.05810 1.30199 1.27046 1.18918 0.84356 0.85825 0.89040 1.40287 1.02754 1.05515 1.74496 1.17559 0.82029 0.82711 1.12702 1.67038 1.11626 1.19063 1.16693 1.20349 0.86271 0.94383 1.18653 1.19896 0.98599 0.92372 0.99325 1.20180 0.94695 0.88870 0.97897 1.19252 0.90247 1.09360 1.23522 0.88750 1.25986 1.01585 0.94010 0.93540 1.69759 1.38559 1.14815 1.12447 0.86202 0.81022 0.78487 0.80474 1.19337 1.19960 1.18219 1.19280 0.78847 0.91829 0.77580 1.90728 1.65232 1.33294 1.51563 1.44084 1.08959 1.07326 1.68774 0.77989 1.68490 1.38241 0.96297 1.15697 1.22149 0.89215 0.94465 0.86249 1.20800 1.00637 0.91224 1.03716 1.19260 0.95538 0.95361 1.11546 1.20732 0.93234 0.96695 0.96714 1.19372 0.93684 0.94811 1.04532 1.20824 0.99847 0.94068 1.02145 0.90863 0.91384 0.90886 0.85052 0.74353 0.94470 0.93594 0.92218 0.90267 0.89512 0.90492 0.88939 0.85189 0.91450 0.91328 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.56 36.00 0.34 -0.50 16 2 C -0.04 -0.43 5.85 -104.94 -0.61 -1.04 16 3 C -0.12 -1.57 9.61 -39.54 -0.38 -1.95 16 4 C 0.21 3.28 6.62 -84.82 -0.56 2.72 16 5 N -0.58 -10.26 10.46 -11.87 -0.12 -10.39 16 6 C 0.58 10.93 8.36 -322.41 -2.70 8.23 16 7 N -0.60 -11.08 5.48 -14.59 -0.08 -11.16 16 8 C 0.40 8.59 8.42 -320.97 -2.70 5.88 16 9 N -0.42 -9.82 7.27 -9.33 -0.07 -9.89 16 10 C -0.07 -1.73 6.89 -81.48 -0.56 -2.30 16 11 C -0.04 -0.91 9.68 36.00 0.35 -0.56 16 12 C -0.01 -0.18 5.55 -104.33 -0.58 -0.76 16 13 C -0.40 -10.15 7.81 -38.06 -0.30 -10.45 16 14 H 0.09 2.25 7.42 -52.49 -0.39 1.86 16 15 C 0.07 1.87 4.62 -17.30 -0.08 1.79 16 16 N -0.74 -19.58 11.17 55.55 0.62 -18.96 16 17 Si 0.91 18.81 29.61 -169.99 -5.03 13.78 16 18 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 20 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 21 C 0.53 13.86 7.48 -12.34 -0.09 13.77 16 22 O -0.53 -15.10 15.07 5.14 0.08 -15.02 16 23 N -0.64 -14.09 5.30 -13.71 -0.07 -14.17 16 24 H 0.39 7.15 8.80 -40.82 -0.36 6.79 16 25 N -0.47 -8.97 7.39 -9.69 -0.07 -9.04 16 26 C 0.24 3.78 6.90 -81.72 -0.56 3.21 16 27 C -0.11 -1.22 9.79 36.01 0.35 -0.86 16 28 C -0.21 -3.03 5.74 -106.81 -0.61 -3.65 16 29 C -0.05 -0.59 8.94 -39.55 -0.35 -0.94 16 30 C -0.12 -1.22 5.85 -104.94 -0.61 -1.83 16 31 C -0.11 -0.74 9.56 36.01 0.34 -0.40 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 34 H 0.07 0.41 5.87 -51.93 -0.30 0.11 16 35 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.42 6.42 8.80 -40.82 -0.36 6.06 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 1.22 7.03 -51.93 -0.37 0.85 16 40 H 0.29 7.02 8.30 -40.82 -0.34 6.68 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 0.64 6.56 -51.93 -0.34 0.30 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.13 1.08 6.52 -52.49 -0.34 0.73 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.38 5.87 -51.93 -0.30 0.07 16 47 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16 LS Contribution 388.50 15.07 5.85 5.85 Total: -1.00 -33.21 388.50 -13.91 -47.12 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -5.70 Total: 11.51 kcal Atomic # 6 Polarization: 19.69 SS G_CDS: -9.32 Total: 10.37 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: 0.20 Total: -73.60 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.08 Total: -15.02 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.21 -13.91 -47.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020673260.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.848 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds