Wall clock time and date at job start Tue Mar 31 2020 06:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46602 * 2 1 4 4 C 1.39327 * 119.52130 * 269.97724 * 3 2 1 5 5 C 1.36238 * 121.06937 * 180.24268 * 4 3 2 6 6 C 1.40265 * 119.59608 * 359.53087 * 5 4 3 7 7 N 1.33868 * 121.97796 * 180.20585 * 6 5 4 8 8 C 1.31814 * 120.21362 * 180.28146 * 7 6 5 9 9 N 1.38690 * 118.67549 * 180.02562 * 8 7 6 10 10 C 1.36980 * 119.99584 * 359.97438 * 9 8 7 11 11 N 1.31911 * 118.70828 * 359.73373 * 10 9 8 12 12 C 1.32286 * 122.34581 * 179.74458 * 11 10 9 13 13 C 1.50696 * 120.24684 * 180.26821 * 12 11 10 14 14 C 1.40682 * 119.49923 * 0.51981 * 12 11 10 15 15 C 1.40615 * 121.15461 * 179.72773 * 14 12 11 16 16 H 1.08006 * 119.99917 * 324.52000 * 15 14 12 17 17 C 1.39900 * 120.00193 * 144.52256 * 15 14 12 18 18 N 1.30958 * 119.99553 * 339.39367 * 17 15 14 19 19 Si 1.86793 * 120.00270 * 159.39596 * 17 15 14 20 20 H 1.48498 * 109.47088 * 89.99970 * 19 17 15 21 21 H 1.48493 * 109.47267 * 209.99971 * 19 17 15 22 22 H 1.48500 * 109.47000 * 330.00399 * 19 17 15 23 23 C 1.47444 * 117.68773 * 359.74617 * 14 12 11 24 24 O 1.21760 * 121.08938 * 180.02562 * 23 14 12 25 25 N 1.35162 * 117.81846 * 0.02562 * 23 14 12 26 26 H 0.96995 * 119.96691 * 180.02562 * 25 23 14 27 27 N 1.33149 * 122.65294 * 359.97438 * 8 7 6 28 28 C 1.31640 * 121.56790 * 0.02562 * 27 8 7 29 29 C 1.50702 * 120.77029 * 180.02562 * 28 27 8 30 30 C 1.40753 * 118.46096 * 359.97438 * 28 27 8 31 31 C 1.36255 * 119.51921 * 90.00363 * 3 2 1 32 32 H 1.09004 * 109.46995 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47505 * 299.99824 * 1 2 3 34 34 H 1.08998 * 109.47194 * 60.00079 * 1 2 3 35 35 H 1.09002 * 109.46750 * 240.00605 * 2 1 3 36 36 H 1.08998 * 109.47194 * 119.99921 * 2 1 3 37 37 H 1.07998 * 119.46429 * 359.97438 * 4 3 2 38 38 H 1.07998 * 120.19796 * 179.78083 * 5 4 3 39 39 H 0.96998 * 119.99775 * 179.97438 * 9 8 7 40 40 H 1.09004 * 109.47044 * 270.24589 * 13 12 11 41 41 H 1.08988 * 109.47578 * 30.25014 * 13 12 11 42 42 H 1.08998 * 109.46887 * 150.25450 * 13 12 11 43 43 H 0.96997 * 119.99864 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.46753 * 89.99515 * 29 28 27 45 45 H 1.09000 * 109.46829 * 210.00033 * 29 28 27 46 46 H 1.09004 * 109.46928 * 329.99915 * 29 28 27 47 47 H 1.07995 * 120.25155 * 0.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2615 2.0680 -1.2124 5 6 2.7200 3.3504 -1.2492 6 6 2.9568 4.0362 -0.0487 7 7 3.4032 5.2981 -0.0293 8 6 3.6192 5.9076 1.1193 9 7 4.0813 7.2152 1.1022 10 6 4.3045 7.8471 -0.0924 11 7 4.0766 7.1862 -1.2111 12 6 4.2630 7.7277 -2.4036 13 6 3.9819 6.9309 -3.6514 14 6 4.7308 9.0511 -2.4980 15 6 4.9465 9.6590 -3.7474 16 1 5.3160 9.0734 -4.5763 17 6 4.6827 11.0224 -3.9169 18 7 3.8805 11.6420 -3.0876 19 14 5.4745 11.9590 -5.3258 20 1 4.5941 11.8942 -6.5199 21 1 5.6686 13.3770 -4.9304 22 1 6.7902 11.3501 -5.6474 23 6 4.9873 9.7783 -1.2413 24 8 5.3926 10.9265 -1.2508 25 7 4.7579 9.1287 -0.0784 26 1 4.9159 9.5777 0.7667 27 7 3.4108 5.3190 2.2953 28 6 2.9726 4.0805 2.3780 29 6 2.7423 3.4320 3.7188 30 6 2.7230 3.3762 1.1852 31 6 2.2560 2.0539 1.1857 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5138 0.8900 37 1 2.0768 1.5431 -2.1380 38 1 2.8962 3.8373 -2.1969 39 1 4.2463 7.6821 1.9362 40 1 4.8831 6.3965 -3.9520 41 1 3.1840 6.2153 -3.4535 42 1 3.6754 7.6049 -4.4513 43 1 3.6979 12.5874 -3.2048 44 1 1.7181 3.6185 4.0414 45 1 2.9074 2.3578 3.6359 46 1 3.4351 3.8509 4.4487 47 1 2.0753 1.5411 2.1188 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020673272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:43 Heat of formation + Delta-G solvation = 89.087117 kcal Electronic energy + Delta-G solvation = -32223.511691 eV Core-core repulsion = 27986.302924 eV Total energy + Delta-G solvation = -4237.208767 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.17256 -39.76964 -38.27970 -36.66624 -35.13723 -34.69014 -34.16460 -32.97610 -32.22743 -31.16840 -29.85114 -29.35029 -27.96248 -27.62023 -25.17500 -24.07430 -23.85827 -22.55897 -21.55390 -20.97865 -20.90610 -18.93780 -17.96750 -17.59443 -16.78002 -16.53312 -16.31194 -15.55792 -15.36434 -15.18907 -14.94246 -14.69079 -14.34624 -14.01860 -13.92083 -13.71245 -13.40427 -13.27420 -13.23108 -13.05443 -12.73299 -12.38493 -12.28149 -12.14031 -11.90611 -11.66242 -11.63057 -11.52687 -11.32908 -11.21790 -11.19740 -11.04441 -10.70656 -10.53056 -10.44307 -10.40433 -9.67611 -9.37281 -9.00132 -8.82571 -8.78298 -8.59347 -7.89693 -7.67393 -7.06155 -6.61035 -4.16299 0.51324 0.99966 2.12035 2.32783 2.81299 3.03646 3.08320 3.13056 3.19564 3.63330 3.89566 4.21098 4.26225 4.39562 4.50872 4.59193 4.62522 4.70496 4.87025 4.98046 5.12667 5.19308 5.31857 5.36172 5.38217 5.43659 5.45472 5.52855 5.68820 5.77140 5.77652 5.85025 5.99984 6.00733 6.02650 6.13852 6.27847 6.47942 6.58420 6.74327 6.78361 6.83577 6.91305 6.94804 6.98666 7.12003 7.45985 7.51600 7.58233 7.93213 8.01995 8.29109 8.55305 8.62015 8.75210 9.45497 9.77074 10.05246 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.002506 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.507800 B =11168.729543 C =12690.536947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.112 4.112 4 C -0.079 4.079 5 C -0.099 4.099 6 C 0.197 3.803 7 N -0.471 5.471 8 C 0.555 3.445 9 N -0.601 5.601 10 C 0.399 3.601 11 N -0.420 5.420 12 C -0.071 4.071 13 C -0.044 4.044 14 C -0.007 4.007 15 C -0.397 4.397 16 H 0.094 0.906 17 C 0.075 3.925 18 N -0.737 5.737 19 Si 0.914 3.086 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.259 1.259 23 C 0.530 3.470 24 O -0.532 6.532 25 N -0.643 5.643 26 H 0.385 0.615 27 N -0.560 5.560 28 C 0.242 3.758 29 C -0.106 4.106 30 C -0.206 4.206 31 C -0.065 4.065 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.125 0.875 38 H 0.140 0.860 39 H 0.417 0.583 40 H 0.036 0.964 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.286 0.714 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.123 -18.779 8.595 21.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.113 4.113 4 C -0.100 4.100 5 C -0.119 4.119 6 C 0.065 3.935 7 N -0.193 5.193 8 C 0.197 3.803 9 N -0.233 5.233 10 C 0.054 3.946 11 N -0.142 5.142 12 C -0.196 4.196 13 C -0.102 4.102 14 C -0.017 4.017 15 C -0.426 4.426 16 H 0.112 0.888 17 C -0.150 4.150 18 N -0.357 5.357 19 Si 0.738 3.262 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.182 1.182 23 C 0.325 3.675 24 O -0.409 6.409 25 N -0.292 5.292 26 H 0.220 0.780 27 N -0.280 5.280 28 C 0.080 3.920 29 C -0.163 4.163 30 C -0.213 4.213 31 C -0.086 4.086 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.143 0.857 38 H 0.158 0.842 39 H 0.254 0.746 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.908 -17.580 8.025 19.939 hybrid contribution 0.504 1.135 0.406 1.306 sum -4.404 -16.445 8.431 18.998 Atomic orbital electron populations 1.21769 0.94952 1.01436 1.02348 1.20503 0.95990 0.92612 1.02665 1.19518 1.02120 0.96638 0.93058 1.20819 0.97243 0.94380 0.97542 1.20755 0.99746 0.93970 0.97404 1.19054 0.92237 0.89740 0.92471 1.69288 1.17584 1.07173 1.25264 1.18835 0.90809 0.86246 0.84379 1.40196 1.66884 1.09650 1.06548 1.17548 1.08516 0.82096 0.86479 1.67053 1.18857 1.32633 0.95699 1.20358 1.13547 0.95120 0.90539 1.19894 0.99017 0.97573 0.93726 1.20178 0.96988 0.92724 0.91785 1.19240 1.33929 0.93569 0.95822 0.88800 1.25974 0.93582 0.97869 0.97614 1.69760 1.22394 1.11883 1.31687 0.86208 0.80748 0.78960 0.80301 1.19360 1.19973 1.18234 1.19281 0.78683 0.86481 0.83062 1.90726 1.47736 1.16735 1.85657 1.44097 1.61759 1.12619 1.10740 0.78039 1.67254 1.19849 1.12338 1.28530 1.21607 0.87626 0.87822 0.94952 1.20791 1.03541 1.00238 0.91758 1.19208 1.09576 0.97315 0.95240 1.20625 0.97507 0.92613 0.97823 0.92637 0.92610 0.92467 0.91108 0.91264 0.85660 0.84211 0.74558 0.94488 0.93623 0.92224 0.90318 0.89520 0.89979 0.89806 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.58 6.03 -27.88 -0.17 -0.75 16 3 C -0.11 -1.14 5.10 -104.93 -0.54 -1.68 16 4 C -0.08 -0.89 9.58 -39.90 -0.38 -1.27 16 5 C -0.10 -1.45 10.01 -39.54 -0.40 -1.85 16 6 C 0.20 3.33 6.62 -84.83 -0.56 2.77 16 7 N -0.47 -9.38 7.51 -11.88 -0.09 -9.47 16 8 C 0.55 10.40 8.37 -322.41 -2.70 7.71 16 9 N -0.60 -11.04 5.48 -14.59 -0.08 -11.12 16 10 C 0.40 8.77 8.42 -320.98 -2.70 6.07 16 11 N -0.42 -10.04 7.29 -9.34 -0.07 -10.11 16 12 C -0.07 -1.76 6.90 -81.48 -0.56 -2.32 16 13 C -0.04 -0.95 9.68 36.00 0.35 -0.60 16 14 C -0.01 -0.19 5.55 -104.33 -0.58 -0.77 16 15 C -0.40 -10.36 7.81 -38.06 -0.30 -10.65 16 16 H 0.09 2.28 7.42 -52.48 -0.39 1.89 16 17 C 0.07 1.91 4.62 -17.30 -0.08 1.83 16 18 N -0.74 -19.82 11.17 55.55 0.62 -19.20 16 19 Si 0.91 19.04 29.61 -169.99 -5.03 14.01 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 23 C 0.53 14.01 7.48 -12.34 -0.09 13.92 16 24 O -0.53 -15.22 15.07 5.14 0.08 -15.14 16 25 N -0.64 -14.21 5.30 -13.71 -0.07 -14.29 16 26 H 0.38 7.16 8.80 -40.82 -0.36 6.80 16 27 N -0.56 -8.98 10.34 -9.69 -0.10 -9.08 16 28 C 0.24 3.25 6.90 -81.72 -0.56 2.68 16 29 C -0.11 -0.88 9.79 36.01 0.35 -0.53 16 30 C -0.21 -2.89 5.74 -106.81 -0.61 -3.51 16 31 C -0.07 -0.70 8.94 -39.54 -0.35 -1.05 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 36 H 0.07 0.42 8.07 -51.93 -0.42 0.01 16 37 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 39 H 0.42 6.23 8.80 -40.82 -0.36 5.87 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.04 0.92 8.14 -51.94 -0.42 0.49 16 42 H 0.06 1.26 7.03 -51.93 -0.37 0.89 16 43 H 0.29 7.08 8.30 -40.82 -0.34 6.74 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.50 6.56 -51.93 -0.34 0.16 16 46 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.13 0.96 6.52 -52.49 -0.34 0.62 16 LS Contribution 393.21 15.07 5.93 5.93 Total: -1.00 -33.58 393.21 -14.27 -47.85 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.93 Total: 11.24 kcal Atomic # 6 Polarization: 18.89 SS G_CDS: -9.52 Total: 9.38 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: 0.21 Total: -73.26 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.08 Total: -15.14 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.58 -14.27 -47.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020673272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.934 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds