Wall clock time and date at job start Tue Mar 31 2020 06:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 109.46602 * 2 1 4 4 C 1.39327 * 119.52130 * 269.97724 * 3 2 1 5 5 C 1.36238 * 121.06937 * 180.24268 * 4 3 2 6 6 C 1.40265 * 119.59608 * 359.53087 * 5 4 3 7 7 N 1.33868 * 121.97796 * 180.20585 * 6 5 4 8 8 C 1.31814 * 120.21362 * 180.28146 * 7 6 5 9 9 N 1.38690 * 118.67549 * 180.02562 * 8 7 6 10 10 C 1.36980 * 119.99584 * 359.97438 * 9 8 7 11 11 N 1.31911 * 118.70828 * 359.73373 * 10 9 8 12 12 C 1.32286 * 122.34581 * 179.74458 * 11 10 9 13 13 C 1.50696 * 120.24684 * 180.26821 * 12 11 10 14 14 C 1.40682 * 119.49923 * 0.51981 * 12 11 10 15 15 C 1.40615 * 121.15461 * 179.72773 * 14 12 11 16 16 H 1.08006 * 119.99917 * 324.52000 * 15 14 12 17 17 C 1.39900 * 120.00193 * 144.52256 * 15 14 12 18 18 N 1.30958 * 119.99553 * 339.39367 * 17 15 14 19 19 Si 1.86793 * 120.00270 * 159.39596 * 17 15 14 20 20 H 1.48498 * 109.47088 * 89.99970 * 19 17 15 21 21 H 1.48493 * 109.47267 * 209.99971 * 19 17 15 22 22 H 1.48500 * 109.47000 * 330.00399 * 19 17 15 23 23 C 1.47444 * 117.68773 * 359.74617 * 14 12 11 24 24 O 1.21760 * 121.08938 * 180.02562 * 23 14 12 25 25 N 1.35162 * 117.81846 * 0.02562 * 23 14 12 26 26 H 0.96995 * 119.96691 * 180.02562 * 25 23 14 27 27 N 1.33149 * 122.65294 * 359.97438 * 8 7 6 28 28 C 1.31640 * 121.56790 * 0.02562 * 27 8 7 29 29 C 1.50702 * 120.77029 * 180.02562 * 28 27 8 30 30 C 1.40753 * 118.46096 * 359.97438 * 28 27 8 31 31 C 1.36255 * 119.51921 * 90.00363 * 3 2 1 32 32 H 1.09004 * 109.46995 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47505 * 299.99824 * 1 2 3 34 34 H 1.08998 * 109.47194 * 60.00079 * 1 2 3 35 35 H 1.09002 * 109.46750 * 240.00605 * 2 1 3 36 36 H 1.08998 * 109.47194 * 119.99921 * 2 1 3 37 37 H 1.07998 * 119.46429 * 359.97438 * 4 3 2 38 38 H 1.07998 * 120.19796 * 179.78083 * 5 4 3 39 39 H 0.96998 * 119.99775 * 179.97438 * 9 8 7 40 40 H 1.09004 * 109.47044 * 270.24589 * 13 12 11 41 41 H 1.08988 * 109.47578 * 30.25014 * 13 12 11 42 42 H 1.08998 * 109.46887 * 150.25450 * 13 12 11 43 43 H 0.96997 * 119.99864 * 179.97438 * 18 17 15 44 44 H 1.08995 * 109.46753 * 89.99515 * 29 28 27 45 45 H 1.09000 * 109.46829 * 210.00033 * 29 28 27 46 46 H 1.09004 * 109.46928 * 329.99915 * 29 28 27 47 47 H 1.07995 * 120.25155 * 0.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2615 2.0680 -1.2124 5 6 2.7200 3.3504 -1.2492 6 6 2.9568 4.0362 -0.0487 7 7 3.4032 5.2981 -0.0293 8 6 3.6192 5.9076 1.1193 9 7 4.0813 7.2152 1.1022 10 6 4.3045 7.8471 -0.0924 11 7 4.0766 7.1862 -1.2111 12 6 4.2630 7.7277 -2.4036 13 6 3.9819 6.9309 -3.6514 14 6 4.7308 9.0511 -2.4980 15 6 4.9465 9.6590 -3.7474 16 1 5.3160 9.0734 -4.5763 17 6 4.6827 11.0224 -3.9169 18 7 3.8805 11.6420 -3.0876 19 14 5.4745 11.9590 -5.3258 20 1 4.5941 11.8942 -6.5199 21 1 5.6686 13.3770 -4.9304 22 1 6.7902 11.3501 -5.6474 23 6 4.9873 9.7783 -1.2413 24 8 5.3926 10.9265 -1.2508 25 7 4.7579 9.1287 -0.0784 26 1 4.9159 9.5777 0.7667 27 7 3.4108 5.3190 2.2953 28 6 2.9726 4.0805 2.3780 29 6 2.7423 3.4320 3.7188 30 6 2.7230 3.3762 1.1852 31 6 2.2560 2.0539 1.1857 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5138 0.8900 37 1 2.0768 1.5431 -2.1380 38 1 2.8962 3.8373 -2.1969 39 1 4.2463 7.6821 1.9362 40 1 4.8831 6.3965 -3.9520 41 1 3.1840 6.2153 -3.4535 42 1 3.6754 7.6049 -4.4513 43 1 3.6979 12.5874 -3.2048 44 1 1.7181 3.6185 4.0414 45 1 2.9074 2.3578 3.6359 46 1 3.4351 3.8509 4.4487 47 1 2.0753 1.5411 2.1188 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020673272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:41 Heat of formation + Delta-G solvation = 72.436201 kcal Electronic energy + Delta-G solvation = -32224.233729 eV Core-core repulsion = 27986.302924 eV Total energy + Delta-G solvation = -4237.930805 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.159 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -42.38716 -41.58301 -39.47461 -38.33170 -36.85096 -35.96834 -35.54325 -34.57352 -33.56742 -32.31170 -31.53386 -30.31274 -29.47334 -28.87990 -26.82634 -25.30708 -24.93152 -23.84976 -23.10077 -22.41096 -22.10872 -20.47731 -19.57888 -19.03665 -18.37515 -18.05220 -17.63125 -17.06236 -16.82869 -16.62005 -16.45998 -16.00212 -15.70273 -15.43742 -14.98222 -14.83185 -14.60161 -14.40987 -14.23585 -14.12515 -13.99484 -13.74894 -13.64841 -13.43668 -13.24152 -13.08331 -13.05141 -12.84337 -12.60264 -12.53513 -12.45338 -12.29558 -12.10530 -11.65556 -11.60227 -11.53948 -11.21212 -10.97485 -10.86770 -10.60836 -10.28735 -9.91211 -9.51075 -9.03112 -8.78247 -8.42816 -6.07362 -0.54037 -0.17454 0.49942 1.07777 1.25936 1.36788 1.44270 1.52350 1.61455 2.13246 2.20319 2.53724 2.77324 3.17059 3.23651 3.49046 3.53548 3.57235 3.73472 3.90886 4.09818 4.13981 4.26325 4.32861 4.53381 4.58369 4.65631 4.65979 4.77115 4.79847 4.92562 4.95650 5.06585 5.07794 5.12200 5.15686 5.16650 5.19309 5.23191 5.28825 5.33986 5.37597 5.52050 5.59471 5.66335 5.70860 5.89101 5.94775 6.04353 6.21644 6.27454 6.55304 6.71339 6.78652 7.41356 7.51430 7.90662 8.28468 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.002506 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.507800 B =11168.729543 C =12690.536947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 C -0.104 4.104 4 C -0.061 4.061 5 C -0.130 4.130 6 C 0.158 3.842 7 N -0.513 5.513 8 C 0.535 3.465 9 N -0.600 5.600 10 C 0.438 3.562 11 N -0.447 5.447 12 C -0.062 4.062 13 C -0.037 4.037 14 C -0.051 4.051 15 C -0.439 4.439 16 H 0.097 0.903 17 C 0.033 3.967 18 N -0.790 5.790 19 Si 0.981 3.019 20 H -0.251 1.251 21 H -0.278 1.278 22 H -0.256 1.256 23 C 0.515 3.485 24 O -0.564 6.564 25 N -0.631 5.631 26 H 0.402 0.598 27 N -0.569 5.569 28 C 0.243 3.757 29 C -0.103 4.103 30 C -0.210 4.210 31 C -0.058 4.058 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.152 0.848 38 H 0.122 0.878 39 H 0.432 0.568 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.285 0.715 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.089 0.911 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.245 -23.533 10.607 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.105 4.105 4 C -0.082 4.082 5 C -0.150 4.150 6 C 0.029 3.971 7 N -0.235 5.235 8 C 0.178 3.822 9 N -0.236 5.236 10 C 0.089 3.911 11 N -0.171 5.171 12 C -0.186 4.186 13 C -0.095 4.095 14 C -0.061 4.061 15 C -0.468 4.468 16 H 0.115 0.885 17 C -0.186 4.186 18 N -0.413 5.413 19 Si 0.802 3.198 20 H -0.175 1.175 21 H -0.203 1.203 22 H -0.180 1.180 23 C 0.311 3.689 24 O -0.443 6.443 25 N -0.280 5.280 26 H 0.240 0.760 27 N -0.289 5.289 28 C 0.082 3.918 29 C -0.159 4.159 30 C -0.216 4.216 31 C -0.078 4.078 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.170 0.830 38 H 0.140 0.860 39 H 0.272 0.728 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.126 0.874 45 H 0.131 0.869 46 H 0.108 0.892 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.059 -22.434 10.064 25.324 hybrid contribution 0.659 1.959 0.152 2.073 sum -5.400 -20.475 10.215 23.511 Atomic orbital electron populations 1.21773 0.94474 1.02423 1.01874 1.20586 0.96174 0.90292 1.04390 1.19980 1.00117 0.98135 0.92248 1.21193 0.94510 0.92929 0.99598 1.20779 1.02314 0.95553 0.96327 1.19421 0.93742 0.89386 0.94542 1.69090 1.18721 1.09164 1.26532 1.18994 0.91653 0.86218 0.85372 1.40107 1.67665 1.10191 1.05667 1.18050 1.04018 0.81443 0.87582 1.67313 1.21077 1.32886 0.95817 1.20990 1.10651 0.94880 0.92050 1.19880 0.99869 0.97338 0.92410 1.20453 0.99433 0.93741 0.92444 1.19339 1.36841 0.94600 0.96018 0.88478 1.26810 0.93360 0.98501 0.99927 1.69836 1.24878 1.11998 1.34551 0.85216 0.79944 0.77022 0.77644 1.17461 1.20311 1.18005 1.19446 0.78941 0.86434 0.84034 1.90677 1.49457 1.17946 1.86235 1.43962 1.60436 1.12692 1.10920 0.76035 1.67374 1.21130 1.13648 1.26780 1.22593 0.85259 0.86834 0.97108 1.21015 1.04846 1.01511 0.88574 1.19515 1.09038 0.98712 0.94323 1.21071 0.95770 0.91019 0.99912 0.91008 0.92660 0.93452 0.90003 0.89103 0.83019 0.85955 0.72834 0.93053 0.92791 0.92274 0.90446 0.87448 0.86878 0.89185 0.81445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 71.98 0.71 -0.60 16 2 C -0.08 -0.70 6.03 29.85 0.18 -0.52 16 3 C -0.10 -1.66 5.10 -20.06 -0.10 -1.77 16 4 C -0.06 -1.23 9.58 22.07 0.21 -1.02 16 5 C -0.13 -3.78 10.01 22.30 0.22 -3.56 16 6 C 0.16 5.31 6.62 40.23 0.27 5.58 16 7 N -0.51 -20.79 7.51 -191.49 -1.44 -22.23 16 8 C 0.54 20.14 8.37 261.35 2.19 22.33 16 9 N -0.60 -22.26 5.48 -200.07 -1.10 -23.35 16 10 C 0.44 19.74 8.42 260.85 2.20 21.94 16 11 N -0.45 -22.06 7.29 -183.45 -1.34 -23.39 16 12 C -0.06 -3.21 6.90 43.09 0.30 -2.91 16 13 C -0.04 -1.66 9.68 71.23 0.69 -0.97 16 14 C -0.05 -2.89 5.55 -19.68 -0.11 -3.00 16 15 C -0.44 -24.22 7.81 23.25 0.18 -24.03 16 16 H 0.10 5.00 7.42 -2.91 -0.02 4.98 16 17 C 0.03 1.79 4.62 85.23 0.39 2.19 16 18 N -0.79 -45.19 11.17 21.83 0.24 -44.95 16 19 Si 0.98 40.97 29.61 68.60 2.03 43.00 16 20 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 21 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 23 C 0.52 28.65 7.48 86.61 0.65 29.30 16 24 O -0.56 -34.07 15.07 -4.54 -0.07 -34.14 16 25 N -0.63 -28.88 5.30 -315.27 -1.67 -30.55 16 26 H 0.40 15.34 8.80 -92.71 -0.82 14.52 16 27 N -0.57 -17.53 10.34 -184.56 -1.91 -19.44 16 28 C 0.24 5.84 6.90 43.20 0.30 6.14 16 29 C -0.10 -1.21 9.79 71.24 0.70 -0.51 16 30 C -0.21 -5.35 5.74 -21.28 -0.12 -5.47 16 31 C -0.06 -0.96 8.94 22.29 0.20 -0.76 16 32 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 36 H 0.09 0.52 8.07 -2.39 -0.02 0.50 16 37 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 39 H 0.43 12.82 8.80 -92.71 -0.82 12.01 16 40 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 42 H 0.06 2.60 7.03 -2.39 -0.02 2.58 16 43 H 0.29 15.10 8.30 -92.71 -0.77 14.33 16 44 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.11 0.65 6.56 -2.39 -0.02 0.64 16 46 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.17 1.39 6.52 -2.91 -0.02 1.37 16 Total: -1.00 -80.18 393.21 3.23 -76.95 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: -0.57 Total: 35.76 kcal Atomic # 6 Polarization: 33.30 SS G_CDS: 9.05 Total: 42.34 kcal Atomic # 7 Polarization: -156.70 SS G_CDS: -7.21 Total: -163.91 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.07 Total: -34.14 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -80.18 3.23 -76.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020673272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.387 kcal (2) G-P(sol) polarization free energy of solvation -80.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds