Wall clock time and date at job start Tue Mar 31 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86795 * 120.00055 * 2 1 4 4 H 1.48504 * 109.47251 * 265.75404 * 3 2 1 5 5 H 1.48501 * 109.47028 * 25.75303 * 3 2 1 6 6 H 1.48496 * 109.47234 * 145.75496 * 3 2 1 7 7 C 1.38891 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00284 * 337.84699 * 7 2 1 9 9 N 1.37140 * 120.00251 * 157.84313 * 7 2 1 10 10 C 1.34771 * 120.00246 * 152.87822 * 9 7 2 11 11 O 1.21281 * 120.00076 * 175.21521 * 10 9 7 12 12 C 1.50702 * 120.00074 * 354.94371 * 10 9 7 13 13 O 1.42901 * 109.47211 * 180.02562 * 12 10 9 14 14 C 1.35918 * 116.99811 * 179.97438 * 13 12 10 15 15 C 1.38724 * 120.05638 * 359.97438 * 14 13 12 16 16 C 1.38149 * 119.98491 * 179.97438 * 15 14 13 17 17 C 1.38262 * 120.08453 * 0.02562 * 16 15 14 18 18 C 1.38358 * 120.11231 * 0.02562 * 17 16 15 19 19 Cl 1.73594 * 119.99542 * 179.97438 * 18 17 16 20 20 C 1.38376 * 120.01181 * 359.69883 * 18 17 16 21 21 Cl 1.73600 * 120.04027 * 180.27619 * 20 18 17 22 22 C 1.39791 * 119.99536 * 332.88021 * 9 7 2 23 23 C 1.38962 * 120.07812 * 117.85005 * 22 9 7 24 24 C 1.38087 * 119.92290 * 179.79167 * 23 22 9 25 25 C 1.38304 * 120.07771 * 0.45633 * 24 23 22 26 26 C 1.38307 * 120.15607 * 359.79235 * 25 24 23 27 27 C 1.38084 * 120.07800 * 359.97438 * 26 25 24 28 28 H 0.96998 * 119.99954 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46636 * 299.99794 * 12 10 9 30 30 H 1.08999 * 109.46859 * 59.99574 * 12 10 9 31 31 H 1.08001 * 120.00627 * 0.02562 * 15 14 13 32 32 H 1.08001 * 119.95989 * 180.02562 * 16 15 14 33 33 H 1.08013 * 119.94612 * 180.02562 * 17 16 15 34 34 H 1.08007 * 120.03750 * 359.97438 * 23 22 9 35 35 H 1.08000 * 119.95649 * 180.24746 * 24 23 22 36 36 H 1.07999 * 119.92252 * 179.77289 * 25 24 23 37 37 H 1.08001 * 119.96286 * 179.97438 * 26 25 24 38 38 H 1.08000 * 120.03921 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.5855 1.9946 -1.3963 5 1 1.4036 2.6769 0.6083 6 1 3.4980 1.4677 0.7878 7 6 2.0087 -1.2028 -0.0005 8 1 1.5285 -2.1038 0.3517 9 7 3.3041 -1.2465 -0.4485 10 6 4.1476 -2.1876 0.0197 11 8 5.2664 -2.2815 -0.4391 12 6 3.7028 -3.1193 1.1175 13 8 4.7658 -4.0188 1.4387 14 6 4.5272 -4.9315 2.4172 15 6 3.2958 -4.9603 3.0553 16 6 3.0548 -5.8889 4.0493 17 6 4.0397 -6.7898 4.4097 18 6 5.2696 -6.7638 3.7765 19 17 6.5043 -7.8959 4.2319 20 6 5.5138 -5.8392 2.7763 21 17 7.0542 -5.8106 1.9764 22 6 3.7496 -0.3149 -1.3907 23 6 4.7745 0.5663 -1.0680 24 6 5.2150 1.4824 -2.0026 25 6 4.6310 1.5299 -3.2554 26 6 3.6071 0.6579 -3.5782 27 6 3.1649 -0.2640 -2.6502 28 1 -0.4850 0.8400 0.0004 29 1 3.4387 -2.5391 2.0016 30 1 2.8346 -3.6869 0.7827 31 1 2.5254 -4.2574 2.7745 32 1 2.0958 -5.9112 4.5456 33 1 3.8488 -7.5152 5.1869 34 1 5.2280 0.5327 -0.0884 35 1 6.0142 2.1649 -1.7538 36 1 4.9749 2.2499 -3.9832 37 1 3.1530 0.6980 -4.5573 38 1 2.3651 -0.9444 -2.9028 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021325794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:37 Heat of formation + Delta-G solvation = -7.072169 kcal Electronic energy + Delta-G solvation = -27242.154662 eV Core-core repulsion = 23102.800739 eV Total energy + Delta-G solvation = -4139.353923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 365.037 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.44225 -39.80731 -38.14691 -37.29388 -36.41620 -36.33973 -35.04357 -32.28592 -30.97739 -30.43232 -30.36539 -29.63491 -27.51015 -25.17910 -23.15423 -22.79606 -22.07819 -21.75167 -19.33744 -18.62469 -18.13436 -16.76904 -16.40693 -16.16853 -15.99828 -15.89282 -15.43587 -15.06845 -14.76782 -14.31724 -14.14365 -14.04895 -13.78316 -13.27271 -13.13526 -12.97128 -12.80627 -12.48819 -12.23487 -12.20344 -11.86650 -11.48094 -11.46890 -11.20856 -11.15989 -11.01891 -10.87165 -10.72315 -10.71250 -10.66585 -10.09394 -9.49303 -9.01085 -8.88935 -8.58650 -8.34284 -8.31437 -7.79948 -6.73168 -4.32643 0.79915 1.07316 1.69914 1.80433 1.93426 2.22451 2.95086 3.06336 3.20426 3.24183 3.33241 3.38049 4.03665 4.20331 4.31395 4.64526 4.72123 4.80361 4.87880 5.08260 5.20330 5.34848 5.40731 5.44309 5.52840 5.58132 5.66900 5.75649 5.90818 5.94706 6.09698 6.11559 6.23102 6.28724 6.53079 6.82302 6.98929 7.02244 7.12217 7.25018 7.48678 7.69680 8.00936 8.61245 9.00645 9.29958 10.33968 Molecular weight = 365.04amu Principal moments of inertia in cm(-1) A = 0.016077 B = 0.002757 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.246194 B =10152.791236 C =11397.236492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.082 3.918 3 Si 0.860 3.140 4 H -0.251 1.251 5 H -0.291 1.291 6 H -0.259 1.259 7 C -0.367 4.367 8 H 0.113 0.887 9 N -0.416 5.416 10 C 0.482 3.518 11 O -0.554 6.554 12 C 0.059 3.941 13 O -0.277 6.277 14 C 0.162 3.838 15 C -0.196 4.196 16 C -0.061 4.061 17 C -0.147 4.147 18 C 0.005 3.995 19 Cl -0.050 7.050 20 C -0.073 4.073 21 Cl -0.035 7.035 22 C 0.158 3.842 23 C -0.125 4.125 24 C -0.117 4.117 25 C -0.138 4.138 26 C -0.114 4.114 27 C -0.109 4.109 28 H 0.280 0.720 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.150 0.850 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.537 -7.647 5.704 10.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.129 4.129 3 Si 0.686 3.314 4 H -0.175 1.175 5 H -0.219 1.219 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.131 0.869 9 N -0.133 5.133 10 C 0.271 3.729 11 O -0.435 6.435 12 C -0.019 4.019 13 O -0.188 6.188 14 C 0.114 3.886 15 C -0.215 4.215 16 C -0.079 4.079 17 C -0.166 4.166 18 C -0.023 4.023 19 Cl -0.020 7.020 20 C -0.101 4.101 21 Cl -0.006 7.006 22 C 0.066 3.934 23 C -0.145 4.145 24 C -0.135 4.135 25 C -0.156 4.156 26 C -0.133 4.133 27 C -0.129 4.129 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.167 0.833 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.314 -7.693 5.337 10.766 hybrid contribution 0.012 0.891 0.186 0.911 sum 5.326 -6.802 5.523 10.254 Atomic orbital electron populations 1.69754 1.06333 1.28909 1.42809 1.25169 0.95057 0.98726 0.93919 0.87163 0.80120 0.82886 0.81238 1.17498 1.21853 1.18384 1.19159 0.85578 0.97562 1.46864 0.86906 1.41332 1.11043 1.26653 1.34291 1.19688 0.84731 0.84170 0.84287 1.90665 1.19955 1.72848 1.60037 1.22509 0.88705 0.91255 0.99415 1.86226 1.40241 1.42598 1.49698 1.18593 0.92054 0.89043 0.88945 1.21536 0.96682 1.03278 1.00054 1.21001 0.98959 0.92783 0.95157 1.20893 0.91326 1.02044 1.02327 1.20452 0.91693 0.93374 0.96757 1.98381 1.53294 1.59021 1.91346 1.19912 0.89974 0.99962 1.00248 1.98392 1.25732 1.97944 1.78518 1.17609 0.94904 0.91529 0.89323 1.21195 0.98181 0.95278 0.99890 1.20855 1.00031 0.98921 0.93734 1.20969 0.97835 1.00098 0.96720 1.20920 0.97357 0.95994 0.99003 1.21178 1.00680 0.99384 0.91636 0.90993 0.88459 0.88982 0.83278 0.84083 0.84150 0.86252 0.86396 0.86628 0.86276 0.85367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.62 13.96 55.49 0.77 -20.85 16 2 C 0.08 2.01 5.20 -17.49 -0.09 1.92 16 3 Si 0.86 19.56 23.47 -169.99 -3.99 15.57 16 4 H -0.25 -5.61 5.26 56.52 0.30 -5.31 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.26 -5.91 6.11 56.52 0.35 -5.56 16 7 C -0.37 -8.71 9.12 -14.94 -0.14 -8.84 16 8 H 0.11 2.65 6.90 -52.49 -0.36 2.28 16 9 N -0.42 -9.54 2.49 -58.98 -0.15 -9.69 16 10 C 0.48 10.77 7.53 -10.99 -0.08 10.69 16 11 O -0.55 -13.88 16.06 -14.35 -0.23 -14.11 16 12 C 0.06 1.06 3.90 36.01 0.14 1.20 16 13 O -0.28 -5.07 9.13 -39.39 -0.36 -5.43 16 14 C 0.16 2.49 6.68 -39.20 -0.26 2.23 16 15 C -0.20 -2.45 9.04 -39.43 -0.36 -2.80 16 16 C -0.06 -0.61 10.04 -39.61 -0.40 -1.00 16 17 C -0.15 -1.50 9.83 -39.53 -0.39 -1.89 16 18 C 0.00 0.06 6.32 -39.49 -0.25 -0.19 16 19 Cl -0.05 -0.56 27.96 -51.86 -1.45 -2.01 16 20 C -0.07 -1.07 6.34 -39.33 -0.25 -1.32 16 21 Cl -0.03 -0.54 27.51 -51.86 -1.43 -1.97 16 22 C 0.16 3.54 2.29 -83.69 -0.19 3.35 16 23 C -0.13 -2.65 5.86 -39.37 -0.23 -2.88 16 24 C -0.12 -2.11 9.55 -39.61 -0.38 -2.48 16 25 C -0.14 -2.31 9.73 -39.53 -0.38 -2.69 16 26 C -0.11 -2.02 9.63 -39.61 -0.38 -2.40 16 27 C -0.11 -2.26 8.48 -39.37 -0.33 -2.59 16 28 H 0.28 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.10 1.60 7.66 -51.93 -0.40 1.21 16 30 H 0.09 1.51 7.01 -51.93 -0.36 1.14 16 31 H 0.15 1.71 6.30 -52.49 -0.33 1.38 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.12 2.55 7.71 -52.48 -0.40 2.15 16 35 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.13 2.63 8.06 -52.49 -0.42 2.21 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -29.10 350.80 -9.21 -38.30 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -3.69 Total: 4.62 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -3.97 Total: -9.71 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.63 Total: -30.54 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.59 Total: -19.55 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -3.99 Total: 15.57 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -2.88 Total: -3.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.10 -9.21 -38.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021325794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.228 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds