Wall clock time and date at job start Tue Mar 31 2020 06:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30617 * 1 3 3 Si 1.86795 * 119.99915 * 2 1 4 4 H 1.48501 * 109.47293 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47595 * 300.00817 * 3 2 1 6 6 H 1.48502 * 109.46820 * 60.00823 * 3 2 1 7 7 C 1.40300 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00025 * 189.90676 * 7 2 1 9 9 C 1.40861 * 120.00169 * 9.90409 * 7 2 1 10 10 C 1.40711 * 120.32959 * 34.92554 * 9 7 2 11 11 C 1.37600 * 119.88658 * 180.24998 * 10 9 7 12 12 C 1.38837 * 120.57837 * 359.74573 * 11 10 9 13 13 C 1.38199 * 120.68720 * 359.97438 * 12 11 10 14 14 C 1.39294 * 120.08612 * 0.02562 * 13 12 11 15 15 C 1.47283 * 120.28915 * 179.97438 * 14 13 12 16 16 O 1.21530 * 120.00068 * 177.17560 * 15 14 13 17 17 O 1.34808 * 120.00302 * 357.17724 * 15 14 13 18 18 C 1.45199 * 117.00229 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47137 * 179.97438 * 18 17 15 20 20 O 1.21290 * 119.99790 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99946 * 179.97438 * 19 18 17 22 22 C 1.47239 * 121.34411 * 180.02562 * 21 19 18 23 23 C 1.52785 * 107.88892 * 115.65435 * 22 21 19 24 24 C 1.50611 * 110.85285 * 47.45160 * 23 22 21 25 25 C 1.38975 * 117.61129 * 160.45856 * 24 23 22 26 26 C 1.37911 * 120.58104 * 179.33541 * 25 24 23 27 27 C 1.38263 * 119.82618 * 0.04863 * 26 25 24 28 28 C 1.37957 * 119.71521 * 0.41382 * 27 26 25 29 29 C 1.37663 * 122.86483 * 340.19814 * 24 23 22 30 30 C 1.46688 * 121.34803 * 0.02562 * 21 19 18 31 31 H 0.96994 * 119.99812 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.05665 * 359.97438 * 10 9 7 33 33 H 1.07992 * 119.71031 * 179.76951 * 11 10 9 34 34 H 1.08006 * 119.65776 * 179.97438 * 12 11 10 35 35 H 1.08000 * 119.96002 * 180.02562 * 13 12 11 36 36 H 1.09001 * 109.46953 * 60.00290 * 18 17 15 37 37 H 1.08999 * 109.46886 * 299.99533 * 18 17 15 38 38 H 1.09002 * 109.77867 * 235.25560 * 22 21 19 39 39 H 1.09003 * 109.78047 * 356.05975 * 22 21 19 40 40 H 1.09005 * 109.20323 * 167.79727 * 23 22 21 41 41 H 1.09000 * 109.20605 * 287.13916 * 23 22 21 42 42 H 1.08001 * 119.71158 * 359.36055 * 25 24 23 43 43 H 1.08003 * 120.08864 * 180.02562 * 26 25 24 44 44 H 1.08005 * 120.14246 * 180.20653 * 27 26 25 45 45 H 1.08001 * 119.74327 * 179.74530 * 28 27 26 46 46 H 1.08998 * 109.43356 * 104.27435 * 30 21 19 47 47 H 1.09001 * 109.39932 * 344.37932 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2401 1.6177 0.0000 4 1 3.7001 1.3464 -0.0006 5 1 1.8813 2.3966 -1.2123 6 1 1.8815 2.3963 1.2126 7 6 2.0077 -1.2150 -0.0005 8 1 3.0756 -1.2221 0.1604 9 6 1.3191 -2.4258 -0.2109 10 6 0.2194 -2.4748 -1.0874 11 6 -0.4498 -3.6612 -1.2822 12 6 -0.0467 -4.8157 -0.6247 13 6 1.0337 -4.7959 0.2369 14 6 1.7315 -3.6102 0.4548 15 6 2.8832 -3.5840 1.3725 16 8 3.5197 -2.5592 1.5196 17 8 3.2313 -4.6966 2.0493 18 6 4.3771 -4.5977 2.9357 19 6 4.6136 -5.9289 3.6014 20 8 3.8881 -6.8686 3.3530 21 7 5.6318 -6.0754 4.4721 22 6 5.8902 -7.3625 5.1390 23 6 7.2532 -7.8689 4.6698 24 6 8.2861 -6.7752 4.7442 25 6 9.6236 -7.1524 4.7585 26 6 10.6204 -6.2008 4.8118 27 6 10.2888 -4.8591 4.8523 28 6 8.9617 -4.4822 4.8479 29 6 7.9574 -5.4393 4.7922 30 6 6.5275 -4.9591 4.7937 31 1 -0.4849 0.8400 0.0004 32 1 -0.1016 -1.5817 -1.6029 33 1 -1.2957 -3.6947 -1.9526 34 1 -0.5830 -5.7388 -0.7882 35 1 1.3374 -5.7010 0.7419 36 1 4.1841 -3.8409 3.6959 37 1 5.2589 -4.3175 2.3595 38 1 5.9009 -7.2222 6.2199 39 1 5.1165 -8.0806 4.8672 40 1 7.5645 -8.6995 5.3032 41 1 7.1719 -8.2148 3.6394 42 1 9.8847 -8.1999 4.7273 43 1 11.6573 -6.5028 4.8222 44 1 11.0654 -4.1095 4.8907 45 1 8.7022 -3.4345 4.8837 46 1 6.2777 -4.5660 5.7792 47 1 6.4080 -4.1728 4.0484 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000022872037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:51 Heat of formation + Delta-G solvation = -69.139586 kcal Electronic energy + Delta-G solvation = -31517.918843 eV Core-core repulsion = 27209.263349 eV Total energy + Delta-G solvation = -4308.655494 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -40.78032 -39.61956 -38.89066 -37.23987 -36.24031 -35.25434 -33.75807 -33.46245 -31.69521 -30.39648 -29.98659 -29.63967 -28.12978 -25.97082 -25.50950 -23.98508 -22.70533 -22.44213 -21.23785 -20.97304 -19.73145 -18.96322 -17.60075 -17.34379 -17.04727 -16.51137 -16.39946 -15.89365 -15.61268 -15.44679 -15.21807 -15.04572 -14.73912 -14.34448 -14.20582 -13.81193 -13.63691 -13.47443 -13.32051 -12.96772 -12.89775 -12.66006 -12.54608 -12.41218 -12.33286 -11.89282 -11.82818 -11.66600 -11.38292 -11.21201 -11.10351 -11.05413 -10.66917 -10.64296 -10.22920 -10.09490 -9.85977 -9.67883 -9.36633 -9.18804 -8.93548 -8.85669 -8.81525 -7.65796 -7.43469 -6.91318 -4.51957 1.00455 1.04550 2.17278 2.44684 2.52046 2.77529 3.04330 3.13251 3.17505 3.39464 3.61425 3.85286 3.89246 4.24907 4.31351 4.50209 4.54900 4.58397 4.68626 4.80829 4.88426 4.95744 5.07279 5.19767 5.22732 5.26409 5.30324 5.35618 5.52850 5.53725 5.59336 5.65838 5.79059 5.98988 6.10165 6.16506 6.18338 6.21276 6.25319 6.37635 6.54429 6.66089 6.91606 7.03306 7.10022 7.13008 7.23908 7.45319 7.62349 7.88141 7.92954 8.04566 8.13066 8.55167 8.69831 8.76878 9.01905 10.03880 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.011879 B = 0.002330 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.551569 B =12011.707720 C =13891.810264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.069 3.931 3 Si 0.918 3.082 4 H -0.256 1.256 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.421 4.421 8 H 0.111 0.889 9 C 0.149 3.851 10 C -0.149 4.149 11 C -0.088 4.088 12 C -0.246 4.246 13 C -0.035 4.035 14 C -0.249 4.249 15 C 0.506 3.494 16 O -0.518 6.518 17 O -0.345 6.345 18 C 0.052 3.948 19 C 0.525 3.475 20 O -0.511 6.511 21 N -0.617 5.617 22 C 0.114 3.886 23 C -0.098 4.098 24 C -0.068 4.068 25 C -0.121 4.121 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.111 4.111 29 C -0.096 4.096 30 C 0.145 3.855 31 H 0.284 0.716 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.086 0.914 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.569 -8.701 10.855 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.150 4.150 3 Si 0.742 3.258 4 H -0.179 1.179 5 H -0.197 1.197 6 H -0.198 1.198 7 C -0.449 4.449 8 H 0.129 0.871 9 C 0.145 3.855 10 C -0.168 4.168 11 C -0.107 4.107 12 C -0.265 4.265 13 C -0.053 4.053 14 C -0.252 4.252 15 C 0.357 3.643 16 O -0.409 6.409 17 O -0.263 6.263 18 C -0.026 4.026 19 C 0.313 3.687 20 O -0.385 6.385 21 N -0.353 5.353 22 C -0.008 4.008 23 C -0.136 4.136 24 C -0.068 4.068 25 C -0.139 4.139 26 C -0.136 4.136 27 C -0.139 4.139 28 C -0.129 4.129 29 C -0.097 4.097 30 C 0.022 3.978 31 H 0.095 0.905 32 H 0.136 0.864 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.105 0.895 41 H 0.101 0.899 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.104 0.896 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 16.124 -8.756 10.762 21.272 hybrid contribution 0.546 0.916 0.203 1.085 sum 16.670 -7.841 10.965 21.438 Atomic orbital electron populations 1.69719 1.07857 1.29827 1.33516 1.26189 0.94825 1.01958 0.92069 0.86088 0.81287 0.79965 0.78498 1.17917 1.19702 1.19792 1.20382 0.97819 0.89503 1.37175 0.87118 1.17460 0.90022 0.90905 0.87110 1.21279 0.98592 0.96503 1.00448 1.20870 0.97967 0.93516 0.98382 1.20386 1.02173 0.97556 1.06410 1.20913 0.93501 0.95996 0.94907 1.18688 1.01772 0.96997 1.07741 1.21489 0.84397 0.79773 0.78630 1.90707 1.53578 1.31702 1.64875 1.86691 1.45085 1.40231 1.54285 1.22399 0.90818 0.94831 0.94549 1.20267 0.79796 0.90143 0.78523 1.90732 1.45415 1.41405 1.60920 1.47932 1.30288 1.12362 1.44727 1.21578 0.96918 0.85591 0.96694 1.20863 0.93248 0.96345 1.03137 1.19504 0.94397 0.93497 0.99390 1.21177 0.92118 0.99673 1.00905 1.21099 0.99254 0.93243 1.00047 1.21082 0.96187 0.96213 1.00458 1.21076 0.92526 0.99297 1.00043 1.19773 0.95042 0.93172 1.01705 1.20614 0.85599 0.88979 1.02588 0.90501 0.86382 0.88794 0.88691 0.87593 0.88757 0.88877 0.90681 0.88106 0.89478 0.89903 0.86063 0.86040 0.85834 0.85557 0.89574 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.80 11.23 55.57 0.62 -19.18 16 2 C 0.07 1.72 5.24 -17.29 -0.09 1.63 16 3 Si 0.92 18.84 29.57 -169.99 -5.03 13.81 16 4 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 7 C -0.42 -11.28 7.78 -37.82 -0.29 -11.58 16 8 H 0.11 3.04 5.72 -52.49 -0.30 2.74 16 9 C 0.15 3.98 5.49 -106.53 -0.59 3.40 16 10 C -0.15 -3.76 8.62 -38.88 -0.34 -4.10 16 11 C -0.09 -2.01 10.01 -39.59 -0.40 -2.40 16 12 C -0.25 -5.47 10.03 -39.37 -0.39 -5.86 16 13 C -0.03 -0.81 9.60 -39.20 -0.38 -1.19 16 14 C -0.25 -6.36 5.92 -104.39 -0.62 -6.98 16 15 C 0.51 12.23 7.86 34.41 0.27 12.50 16 16 O -0.52 -13.01 13.30 -19.29 -0.26 -13.27 16 17 O -0.34 -7.39 9.01 -47.47 -0.43 -7.82 16 18 C 0.05 0.85 4.38 36.01 0.16 1.01 16 19 C 0.53 8.12 7.80 -10.99 -0.09 8.04 16 20 O -0.51 -9.78 15.99 -14.11 -0.23 -10.01 16 21 N -0.62 -7.14 2.93 -174.36 -0.51 -7.65 16 22 C 0.11 1.09 6.44 -3.75 -0.02 1.07 16 23 C -0.10 -0.81 5.86 -28.04 -0.16 -0.98 16 24 C -0.07 -0.62 5.76 -104.60 -0.60 -1.22 16 25 C -0.12 -0.97 9.59 -39.43 -0.38 -1.35 16 26 C -0.12 -0.90 10.04 -39.69 -0.40 -1.30 16 27 C -0.12 -0.94 10.05 -39.68 -0.40 -1.34 16 28 C -0.11 -0.92 9.62 -39.46 -0.38 -1.30 16 29 C -0.10 -0.89 5.82 -104.54 -0.61 -1.50 16 30 C 0.15 1.33 6.09 -5.03 -0.03 1.30 16 31 H 0.28 6.46 8.29 -40.82 -0.34 6.12 16 32 H 0.12 2.99 6.68 -52.49 -0.35 2.64 16 33 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 35 H 0.11 2.33 7.60 -52.49 -0.40 1.93 16 36 H 0.09 1.40 8.11 -51.93 -0.42 0.97 16 37 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 1.08 7.08 -51.93 -0.37 0.71 16 40 H 0.09 0.53 8.11 -51.93 -0.42 0.10 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.12 0.75 8.05 -52.49 -0.42 0.33 16 43 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 44 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 45 H 0.13 0.84 8.05 -52.49 -0.42 0.42 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.88 6.19 -51.93 -0.32 0.56 16 LS Contribution 393.49 15.07 5.93 5.93 Total: -1.00 -32.11 393.49 -11.54 -43.66 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.91 Total: 6.66 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -5.73 Total: -12.14 kcal Atomic # 7 Polarization: -26.94 SS G_CDS: 0.11 Total: -26.83 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.91 Total: -31.09 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.11 -11.54 -43.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000022872037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.483 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds