Wall clock time and date at job start Tue Mar 31 2020 06:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86793 * 120.00095 * 2 1 4 4 H 1.48504 * 109.47286 * 275.25420 * 3 2 1 5 5 H 1.48503 * 109.47484 * 35.25482 * 3 2 1 6 6 H 1.48498 * 109.47617 * 155.25774 * 3 2 1 7 7 C 1.38891 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00118 * 1.38224 * 7 2 1 9 9 N 1.37136 * 119.99776 * 181.38129 * 7 2 1 10 10 C 1.34774 * 120.00239 * 125.56174 * 9 7 2 11 11 O 1.21280 * 120.00318 * 183.35869 * 10 9 7 12 12 C 1.50707 * 119.99739 * 3.35656 * 10 9 7 13 13 O 1.42902 * 109.46872 * 175.00596 * 12 10 9 14 14 C 1.35899 * 116.99415 * 184.57047 * 13 12 10 15 15 C 1.38719 * 120.04651 * 4.70556 * 14 13 12 16 16 C 1.38267 * 119.95722 * 179.79245 * 15 14 13 17 17 Cl 1.73596 * 119.97919 * 180.25967 * 16 15 14 18 18 C 1.38360 * 120.04365 * 0.46717 * 16 15 14 19 19 C 1.38374 * 120.08336 * 359.78965 * 18 16 15 20 20 Cl 1.73603 * 119.97590 * 179.97438 * 19 18 16 21 21 C 1.38258 * 120.04265 * 359.97438 * 19 18 16 22 22 C 1.39791 * 120.00084 * 305.55377 * 9 7 2 23 23 C 1.38956 * 120.08052 * 351.67799 * 22 9 7 24 24 C 1.38080 * 119.92559 * 179.97438 * 23 22 9 25 25 C 1.38308 * 120.07780 * 0.02562 * 24 23 22 26 26 C 1.38308 * 120.15459 * 359.97438 * 25 24 23 27 27 C 1.38085 * 120.07828 * 359.97438 * 26 25 24 28 28 H 0.97000 * 120.00041 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46424 * 295.00039 * 12 10 9 30 30 H 1.08997 * 109.47088 * 55.00277 * 12 10 9 31 31 H 1.08003 * 120.01996 * 0.03615 * 15 14 13 32 32 H 1.08004 * 119.96177 * 179.76591 * 18 16 15 33 33 H 1.08002 * 120.02381 * 179.97438 * 21 19 18 34 34 H 1.08003 * 120.03548 * 359.69854 * 23 22 9 35 35 H 1.08003 * 119.96334 * 179.97438 * 24 23 22 36 36 H 1.07996 * 119.92123 * 179.97438 * 25 24 23 37 37 H 1.08001 * 119.96217 * 180.02562 * 26 25 24 38 38 H 1.08000 * 120.03544 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3847 2.1105 -1.3942 5 1 1.5057 2.6181 0.8081 6 1 3.5969 1.4107 0.5860 7 6 2.0086 -1.2028 0.0005 8 1 1.4689 -2.1380 -0.0216 9 7 3.3797 -1.2030 0.0292 10 6 4.0338 -1.8928 0.9846 11 8 5.2440 -1.8438 1.0469 12 6 3.2612 -2.7250 1.9754 13 8 4.1738 -3.4458 2.8059 14 6 3.6378 -4.3222 3.6956 15 6 2.2707 -4.5573 3.7014 16 6 1.7280 -5.4526 4.6046 17 17 0.0181 -5.7523 4.6078 18 6 2.5462 -6.1065 5.5086 19 6 3.9094 -5.8693 5.5080 20 17 4.9333 -6.6907 6.6440 21 6 4.4565 -4.9785 4.6032 22 6 4.0990 -0.4877 -0.9327 23 6 3.4394 0.0798 -2.0161 24 6 4.1530 0.7861 -2.9640 25 6 5.5228 0.9286 -2.8365 26 6 6.1826 0.3650 -1.7595 27 6 5.4752 -0.3417 -0.8072 28 1 -0.4850 0.8400 0.0004 29 1 2.6440 -2.0734 2.5940 30 1 2.6237 -3.4286 1.4401 31 1 1.6313 -4.0444 2.9983 32 1 2.1203 -6.8027 6.2160 33 1 5.5206 -4.7932 4.6032 34 1 2.3705 -0.0352 -2.1189 35 1 3.6410 1.2271 -3.8066 36 1 6.0784 1.4811 -3.5796 37 1 7.2522 0.4785 -1.6627 38 1 5.9912 -0.7818 0.0334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023104659.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:40 Heat of formation + Delta-G solvation = -2.616911 kcal Electronic energy + Delta-G solvation = -27080.859131 eV Core-core repulsion = 22941.698403 eV Total energy + Delta-G solvation = -4139.160728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 365.037 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.59989 -39.97911 -38.15912 -37.33643 -36.94198 -36.09606 -35.30442 -32.39146 -31.10342 -30.49155 -30.22582 -29.66098 -27.46364 -25.40945 -23.16333 -22.81674 -21.97145 -21.42966 -19.65139 -18.65101 -18.31373 -16.66668 -16.49025 -16.24215 -16.11961 -15.75760 -15.57530 -15.24587 -14.64459 -14.47205 -14.20764 -13.94893 -13.65706 -13.41561 -13.24396 -12.93152 -12.61360 -12.52645 -12.49685 -12.39459 -12.27228 -11.60500 -11.46287 -11.44814 -11.29728 -11.10744 -11.10496 -10.77634 -10.56585 -10.41459 -10.21100 -9.55383 -9.15014 -8.97803 -8.59703 -8.45546 -8.14086 -7.23245 -6.71759 -4.71488 0.76395 0.99352 1.55285 1.90121 2.05363 2.06798 2.88313 3.04432 3.14897 3.24218 3.26569 3.30409 3.95321 4.16596 4.46159 4.68068 4.72955 4.77314 4.83405 4.89539 5.18030 5.26869 5.42149 5.52444 5.55593 5.65029 5.80052 5.81931 5.87890 5.92971 6.15145 6.17719 6.27997 6.41156 6.68682 7.04992 7.07989 7.17798 7.23386 7.24718 7.56958 7.78258 7.99628 8.56771 8.85846 9.12952 10.29427 Molecular weight = 365.04amu Principal moments of inertia in cm(-1) A = 0.013015 B = 0.002749 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.915002 B =10181.334749 C =11838.224352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.087 3.913 3 Si 0.872 3.128 4 H -0.252 1.252 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.383 4.383 8 H 0.111 0.889 9 N -0.401 5.401 10 C 0.503 3.497 11 O -0.538 6.538 12 C 0.058 3.942 13 O -0.285 6.285 14 C 0.169 3.831 15 C -0.199 4.199 16 C 0.018 3.982 17 Cl -0.054 7.054 18 C -0.148 4.148 19 C 0.014 3.986 20 Cl -0.055 7.055 21 C -0.143 4.143 22 C 0.158 3.842 23 C -0.158 4.158 24 C -0.105 4.105 25 C -0.168 4.168 26 C -0.108 4.108 27 C -0.182 4.182 28 H 0.282 0.718 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.153 0.847 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.140 0.860 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 -7.938 7.174 11.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.125 4.125 3 Si 0.698 3.302 4 H -0.177 1.177 5 H -0.216 1.216 6 H -0.180 1.180 7 C -0.509 4.509 8 H 0.129 0.871 9 N -0.112 5.112 10 C 0.293 3.707 11 O -0.420 6.420 12 C -0.019 4.019 13 O -0.197 6.197 14 C 0.121 3.879 15 C -0.218 4.218 16 C -0.009 4.009 17 Cl -0.024 7.024 18 C -0.168 4.168 19 C -0.013 4.013 20 Cl -0.026 7.026 21 C -0.162 4.162 22 C 0.062 3.938 23 C -0.178 4.178 24 C -0.124 4.124 25 C -0.188 4.188 26 C -0.127 4.127 27 C -0.202 4.202 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.171 0.829 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.157 0.843 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.881 -7.910 7.325 11.458 hybrid contribution -0.348 0.899 -0.190 0.982 sum 3.534 -7.011 7.135 10.609 Atomic orbital electron populations 1.69636 1.06139 1.29012 1.43448 1.25474 0.95260 0.99130 0.92627 0.86965 0.80781 0.82422 0.80050 1.17704 1.21567 1.18038 1.19056 0.77333 0.96114 1.58350 0.87138 1.41211 1.07057 1.41916 1.21040 1.20105 0.87044 0.82123 0.81388 1.90279 1.14220 1.65113 1.72350 1.22482 0.91217 0.95533 0.92709 1.86145 1.35299 1.51280 1.46928 1.18620 0.90493 0.89506 0.89279 1.21421 0.94891 1.02644 1.02866 1.20402 0.85622 0.97753 0.97096 1.98398 1.11178 1.94946 1.97925 1.20714 0.91163 1.03467 1.01459 1.20267 0.90742 0.96607 0.93729 1.98384 1.67566 1.77415 1.59244 1.20300 1.01426 0.98856 0.95623 1.18426 0.91242 0.94470 0.89624 1.21021 1.01558 1.00843 0.94381 1.20833 0.94076 0.99006 0.98443 1.20950 0.94593 1.03689 0.99520 1.21035 0.99174 0.97820 0.94663 1.22761 0.93329 1.01419 1.02660 0.90773 0.87787 0.88558 0.82916 0.83899 0.83338 0.84275 0.86726 0.87211 0.86799 0.80493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.42 13.96 55.49 0.77 -20.65 16 2 C 0.09 2.10 4.61 -17.49 -0.08 2.02 16 3 Si 0.87 19.89 23.85 -169.99 -4.05 15.84 16 4 H -0.25 -5.56 6.14 56.52 0.35 -5.21 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.26 -6.19 6.48 56.52 0.37 -5.82 16 7 C -0.38 -8.99 8.01 -14.94 -0.12 -9.11 16 8 H 0.11 2.65 7.70 -52.49 -0.40 2.24 16 9 N -0.40 -9.10 2.30 -58.98 -0.14 -9.24 16 10 C 0.50 10.76 7.65 -10.98 -0.08 10.68 16 11 O -0.54 -12.26 12.92 -14.30 -0.18 -12.44 16 12 C 0.06 1.01 4.11 36.01 0.15 1.16 16 13 O -0.29 -4.82 9.67 -39.28 -0.38 -5.20 16 14 C 0.17 2.40 6.68 -39.22 -0.26 2.14 16 15 C -0.20 -2.63 8.85 -39.39 -0.35 -2.98 16 16 C 0.02 0.22 6.32 -39.53 -0.25 -0.03 16 17 Cl -0.05 -0.61 28.95 -51.86 -1.50 -2.11 16 18 C -0.15 -1.62 9.61 -39.49 -0.38 -2.00 16 19 C 0.01 0.15 6.32 -39.52 -0.25 -0.10 16 20 Cl -0.06 -0.55 28.95 -51.86 -1.50 -2.05 16 21 C -0.14 -1.80 9.77 -39.39 -0.38 -2.18 16 22 C 0.16 3.56 4.13 -83.69 -0.35 3.21 16 23 C -0.16 -3.37 5.57 -39.37 -0.22 -3.59 16 24 C -0.10 -1.95 9.76 -39.61 -0.39 -2.34 16 25 C -0.17 -2.91 10.04 -39.53 -0.40 -3.31 16 26 C -0.11 -1.98 10.04 -39.61 -0.40 -2.37 16 27 C -0.18 -3.87 9.03 -39.37 -0.36 -4.23 16 28 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 29 H 0.10 1.74 8.08 -51.93 -0.42 1.32 16 30 H 0.10 1.54 6.77 -51.93 -0.35 1.19 16 31 H 0.15 2.00 6.27 -52.48 -0.33 1.67 16 32 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.14 3.11 5.70 -52.48 -0.30 2.81 16 35 H 0.11 1.82 8.06 -52.48 -0.42 1.40 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.18 3.93 4.58 -55.99 -0.26 3.67 16 LS Contribution 348.54 15.07 5.25 5.25 Total: -1.00 -26.30 348.54 -9.24 -35.54 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -3.40 Total: 8.08 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -4.11 Total: -13.03 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: 0.64 Total: -29.88 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.56 Total: -17.64 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.05 Total: 15.84 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -3.00 Total: -4.16 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -26.30 -9.24 -35.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023104659.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.926 kcal (2) G-P(sol) polarization free energy of solvation -26.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds