Wall clock time and date at job start Tue Mar 31 2020 06:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86804 * 119.99687 * 2 1 4 4 H 1.48505 * 109.46755 * 239.99410 * 3 2 1 5 5 H 1.48496 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46879 * 119.99734 * 3 2 1 7 7 C 1.38631 * 120.00276 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00071 * 180.02562 * 7 2 1 9 9 O 1.34819 * 119.99672 * 0.02562 * 7 2 1 10 10 C 1.35772 * 116.99826 * 174.96247 * 9 7 2 11 11 C 1.38909 * 120.00257 * 185.07001 * 10 9 7 12 12 C 1.37999 * 120.00401 * 179.72700 * 11 10 9 13 13 C 1.38918 * 119.99753 * 0.56731 * 12 11 10 14 14 N 1.39992 * 119.99924 * 179.72598 * 13 12 11 15 15 C 1.34771 * 120.00288 * 35.10824 * 14 13 12 16 16 O 1.21295 * 120.00016 * 355.48867 * 15 14 13 17 17 C 1.50699 * 120.00312 * 175.49170 * 15 14 13 18 18 C 1.50699 * 109.47336 * 179.97438 * 17 15 14 19 19 C 1.38262 * 119.98206 * 269.72528 * 18 17 15 20 20 C 1.38212 * 120.03645 * 179.76663 * 19 18 17 21 21 C 1.38350 * 119.99835 * 0.50533 * 20 19 18 22 22 Cl 1.73601 * 120.01913 * 179.72198 * 21 20 19 23 23 C 1.38443 * 119.96322 * 359.75245 * 21 20 19 24 24 Cl 1.73595 * 120.02213 * 180.02562 * 23 21 20 25 25 C 1.38203 * 119.97749 * 90.00108 * 18 17 15 26 26 C 1.38914 * 119.99713 * 359.70997 * 13 12 11 27 27 C 1.38004 * 120.00281 * 359.97438 * 26 13 12 28 28 H 0.96998 * 119.99769 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99313 * 359.97438 * 11 10 9 30 30 H 1.08007 * 119.99926 * 180.27434 * 12 11 10 31 31 H 0.97009 * 119.99797 * 215.10712 * 14 13 12 32 32 H 1.08994 * 109.47088 * 299.99769 * 17 15 14 33 33 H 1.09000 * 109.47127 * 59.99692 * 17 15 14 34 34 H 1.08000 * 119.98408 * 0.02562 * 19 18 17 35 35 H 1.07999 * 120.00057 * 180.25855 * 20 19 18 36 36 H 1.07998 * 120.00424 * 359.95524 * 25 18 17 37 37 H 1.08003 * 119.99989 * 179.97438 * 26 13 12 38 38 H 1.07997 * 120.00644 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1036 1.6964 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6965 1.2126 7 6 2.0090 -1.2005 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0704 -3.5045 -0.1052 11 6 1.4355 -4.7348 -0.2176 12 6 2.1830 -5.8893 -0.3307 13 6 3.5705 -5.8222 -0.3202 14 7 4.3288 -6.9939 -0.4292 15 6 3.8933 -8.0091 -1.2011 16 8 2.8067 -7.9415 -1.7359 17 6 4.7561 -9.2286 -1.3997 18 6 4.0436 -10.2075 -2.2969 19 6 3.2181 -11.1721 -1.7494 20 6 2.5603 -12.0674 -2.5716 21 6 2.7358 -12.0053 -3.9425 22 17 1.9154 -13.1341 -4.9752 23 6 3.5665 -11.0428 -4.4903 24 17 3.7873 -10.9630 -6.2103 25 6 4.2201 -10.1440 -3.6662 26 6 4.2054 -4.5923 -0.2020 27 6 3.4579 -3.4372 -0.0954 28 1 -0.4850 0.8400 -0.0004 29 1 0.3567 -4.7875 -0.2205 30 1 1.6892 -6.8455 -0.4226 31 1 5.1679 -7.0750 0.0509 32 1 5.7000 -8.9349 -1.8589 33 1 4.9516 -9.6964 -0.4348 34 1 3.0840 -11.2234 -0.6790 35 1 1.9124 -12.8180 -2.1436 36 1 4.8679 -9.3927 -4.0930 37 1 5.2842 -4.5401 -0.1934 38 1 3.9514 -2.4809 -0.0039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000023150661.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:44 Heat of formation + Delta-G solvation = -22.308462 kcal Electronic energy + Delta-G solvation = -25726.847377 eV Core-core repulsion = 21586.832759 eV Total energy + Delta-G solvation = -4140.014618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 365.037 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.55717 -39.59324 -38.62972 -36.97404 -36.82613 -36.44916 -34.03749 -33.02775 -32.19268 -31.28106 -30.24890 -28.85321 -27.11928 -25.33794 -23.38220 -22.78087 -22.23462 -21.29659 -20.20206 -18.11304 -17.81567 -17.31823 -17.09605 -16.55218 -16.43025 -15.86050 -15.11232 -14.59853 -14.56633 -14.34280 -14.24437 -14.17666 -13.77824 -13.60296 -13.54118 -12.85201 -12.80599 -12.45393 -12.28344 -12.18555 -11.97003 -11.83789 -11.61510 -11.59409 -11.51656 -11.32163 -11.16955 -11.03521 -10.77034 -10.49624 -9.83993 -9.66904 -9.30293 -9.26685 -8.94761 -8.73233 -8.24172 -6.97676 -6.46326 -4.04732 0.56592 0.74724 1.52172 1.88580 2.03619 2.17375 2.73897 2.94253 3.11470 3.13446 3.15860 3.38916 3.95146 4.14119 4.23550 4.51414 4.64229 4.68344 4.75870 4.84537 5.03320 5.07488 5.14245 5.30704 5.36550 5.51376 5.53873 5.64784 5.75226 5.97020 6.09800 6.17558 6.20546 6.24438 6.77348 6.81075 6.93958 7.12278 7.18947 7.37826 7.63414 7.74883 7.97726 8.27845 8.98651 9.68632 10.71398 Molecular weight = 365.04amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.001706 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.865180 B =16409.443827 C =16750.640415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.393 4.393 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.148 3.852 11 C -0.180 4.180 12 C -0.066 4.066 13 C 0.031 3.969 14 N -0.660 5.660 15 C 0.504 3.496 16 O -0.516 6.516 17 C -0.103 4.103 18 C -0.046 4.046 19 C -0.088 4.088 20 C -0.097 4.097 21 C -0.032 4.032 22 Cl -0.053 7.053 23 C -0.028 4.028 24 Cl -0.050 7.050 25 C -0.084 4.084 26 C -0.089 4.089 27 C -0.221 4.221 28 H 0.271 0.729 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.402 0.598 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.138 0.862 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.110 0.890 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.317 -24.471 -3.880 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.078 6.078 10 C 0.094 3.906 11 C -0.200 4.200 12 C -0.086 4.086 13 C -0.061 4.061 14 N -0.304 5.304 15 C 0.291 3.709 16 O -0.392 6.392 17 C -0.143 4.143 18 C -0.047 4.047 19 C -0.106 4.106 20 C -0.116 4.116 21 C -0.060 4.060 22 Cl -0.024 7.024 23 C -0.056 4.056 24 Cl -0.021 7.021 25 C -0.102 4.102 26 C -0.109 4.109 27 C -0.241 4.241 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.146 0.854 31 H 0.237 0.763 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.128 0.872 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.042 -24.311 -4.523 27.081 hybrid contribution 0.917 0.790 -0.053 1.211 sum 11.959 -23.521 -4.576 26.781 Atomic orbital electron populations 1.70039 1.05954 1.27827 1.45753 1.25299 0.95856 0.98860 0.96538 0.85781 0.78703 0.79780 0.79152 1.19500 1.20271 1.19502 1.21267 0.91748 0.80856 1.53019 0.89103 1.83992 1.34256 1.11397 1.78202 1.19429 0.90259 0.88143 0.92809 1.20159 0.99763 0.89909 1.10153 1.20727 0.91837 0.98104 0.97921 1.17235 0.90680 0.84699 1.13490 1.43189 1.24911 1.14937 1.47399 1.20431 0.87538 0.84114 0.78860 1.90760 1.21211 1.79559 1.47623 1.20697 0.99110 0.93237 1.01234 1.19295 0.97153 0.95373 0.92869 1.21073 0.95151 0.93879 1.00524 1.20999 1.00025 1.00182 0.90357 1.20779 0.98600 0.94549 0.92027 1.98389 1.77360 1.59523 1.67131 1.20696 1.00535 0.98165 0.86176 1.98394 1.96064 1.97829 1.09850 1.20879 0.99493 0.97525 0.92343 1.20479 0.98388 0.90763 1.01257 1.20974 0.93684 0.98406 1.11017 0.91923 0.86153 0.85355 0.76346 0.87347 0.87279 0.84391 0.83920 0.84079 0.87167 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.17 13.67 55.48 0.76 -24.41 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.39 -10.84 9.48 30.88 0.29 -10.54 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 9 O -0.18 -4.98 9.76 0.01 0.00 -4.98 16 10 C 0.15 3.55 6.65 -39.08 -0.26 3.29 16 11 C -0.18 -3.92 9.98 -39.42 -0.39 -4.31 16 12 C -0.07 -1.26 8.69 -39.42 -0.34 -1.61 16 13 C 0.03 0.52 6.30 -83.63 -0.53 -0.01 16 14 N -0.66 -7.84 5.34 -9.83 -0.05 -7.89 16 15 C 0.50 6.04 7.67 -10.99 -0.08 5.95 16 16 O -0.52 -8.60 13.47 5.54 0.07 -8.52 16 17 C -0.10 -0.71 5.83 -29.04 -0.17 -0.88 16 18 C -0.05 -0.40 4.37 -104.63 -0.46 -0.86 16 19 C -0.09 -0.71 9.70 -39.58 -0.38 -1.09 16 20 C -0.10 -0.81 9.83 -39.55 -0.39 -1.20 16 21 C -0.03 -0.32 6.32 -39.46 -0.25 -0.57 16 22 Cl -0.05 -0.50 27.96 -51.86 -1.45 -1.95 16 23 C -0.03 -0.29 6.32 -39.46 -0.25 -0.54 16 24 Cl -0.05 -0.51 27.96 -51.86 -1.45 -1.96 16 25 C -0.08 -0.80 9.48 -39.55 -0.38 -1.18 16 26 C -0.09 -1.52 9.96 -39.42 -0.39 -1.92 16 27 C -0.22 -4.63 9.16 -39.42 -0.36 -4.99 16 28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 30 H 0.13 2.40 6.23 -52.48 -0.33 2.07 16 31 H 0.40 3.15 8.82 -40.82 -0.36 2.79 16 32 H 0.11 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.11 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 38 H 0.13 2.71 5.63 -52.49 -0.30 2.41 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -33.77 364.92 -9.42 -43.19 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -3.34 Total: 5.28 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -4.44 Total: -19.48 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.71 Total: -32.30 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.07 Total: -13.50 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -2.90 Total: -3.92 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.77 -9.42 -43.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150661.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.883 kcal (2) G-P(sol) polarization free energy of solvation -33.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds