Wall clock time and date at job start Tue Mar 31 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86791 * 120.00508 * 2 1 4 4 H 1.48498 * 109.47364 * 240.00045 * 3 2 1 5 5 H 1.48500 * 109.47300 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46925 * 120.00007 * 3 2 1 7 7 C 1.38635 * 119.99187 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99290 * 179.97438 * 7 2 1 9 9 O 1.34817 * 120.00495 * 359.97438 * 7 2 1 10 10 C 1.35772 * 116.99868 * 185.41455 * 9 7 2 11 11 C 1.38907 * 120.00099 * 5.91545 * 10 9 7 12 12 C 1.38009 * 119.99922 * 179.97438 * 11 10 9 13 13 C 1.38918 * 120.00071 * 0.02562 * 12 11 10 14 14 N 1.39991 * 119.99964 * 179.97438 * 13 12 11 15 15 C 1.34774 * 119.99902 * 33.69440 * 14 13 12 16 16 O 1.21295 * 120.00374 * 5.19647 * 15 14 13 17 17 C 1.50700 * 119.99731 * 185.20777 * 15 14 13 18 18 C 1.50704 * 109.47005 * 179.97438 * 17 15 14 19 19 C 1.38242 * 119.99168 * 264.72245 * 18 17 15 20 20 C 1.38200 * 120.02692 * 179.72602 * 19 18 17 21 21 C 1.38384 * 120.01078 * 0.54487 * 20 19 18 22 22 Cl 1.73602 * 120.00547 * 179.74633 * 21 20 19 23 23 C 1.38306 * 119.98540 * 359.73348 * 21 20 19 24 24 C 1.38339 * 119.99664 * 84.99706 * 18 17 15 25 25 Cl 1.73603 * 120.00494 * 0.02562 * 24 18 17 26 26 C 1.38921 * 119.99705 * 0.27844 * 13 12 11 27 27 C 1.38006 * 119.99573 * 359.46322 * 26 13 12 28 28 H 0.97005 * 119.99627 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.00208 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.99867 * 179.97438 * 12 11 10 31 31 H 0.97000 * 120.00104 * 213.68083 * 14 13 12 32 32 H 1.09005 * 109.47103 * 299.98983 * 17 15 14 33 33 H 1.08995 * 109.47675 * 59.99468 * 17 15 14 34 34 H 1.07999 * 119.98744 * 0.02562 * 19 18 17 35 35 H 1.08006 * 119.99572 * 180.27639 * 20 19 18 36 36 H 1.08001 * 120.01066 * 180.02562 * 23 21 20 37 37 H 1.07997 * 120.00108 * 179.69422 * 26 13 12 38 38 H 1.08002 * 120.00129 * 180.25038 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6176 0.0000 4 1 3.1036 1.6962 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1036 1.6961 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3346 -2.3682 -0.0005 10 6 2.0694 -3.5043 0.1131 11 6 3.4367 -3.4267 0.3456 12 6 4.1835 -4.5815 0.4617 13 6 3.5679 -5.8214 0.3453 14 7 4.3255 -6.9927 0.4625 15 6 5.3823 -7.0310 1.2980 16 8 5.6210 -6.0844 2.0178 17 6 6.2675 -8.2499 1.3379 18 6 7.3675 -8.0391 2.3462 19 6 8.6012 -7.5698 1.9351 20 6 9.6086 -7.3708 2.8599 21 6 9.3866 -7.6520 4.1966 22 17 10.6544 -7.4083 5.3572 23 6 8.1545 -8.1271 4.6076 24 6 7.1445 -8.3207 3.6821 25 17 5.5977 -8.9175 4.1971 26 6 2.2016 -5.8988 0.1064 27 6 1.4540 -4.7441 -0.0042 28 1 -0.4850 0.8401 0.0004 29 1 3.9153 -2.4628 0.4357 30 1 5.2466 -4.5212 0.6421 31 1 4.0898 -7.7769 -0.0576 32 1 5.6755 -9.1199 1.6223 33 1 6.7045 -8.4141 0.3529 34 1 8.7761 -7.3539 0.8915 35 1 10.5708 -6.9999 2.5388 36 1 7.9806 -8.3463 5.6507 37 1 1.7238 -6.8627 0.0111 38 1 0.3911 -4.8042 -0.1859 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023150696.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:46 Heat of formation + Delta-G solvation = -42.419094 kcal Electronic energy + Delta-G solvation = -26071.466671 eV Core-core repulsion = 21930.579991 eV Total energy + Delta-G solvation = -4140.886680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 365.037 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.61136 -40.69855 -40.00986 -38.16156 -37.77733 -37.30553 -35.35536 -34.20826 -33.79935 -31.95560 -31.84783 -30.05415 -28.27102 -27.16085 -24.15326 -24.02801 -23.57154 -22.53658 -21.22151 -19.95702 -19.17902 -18.46598 -18.03104 -17.94500 -17.32497 -16.47644 -16.42548 -16.22910 -15.68681 -15.50876 -15.46753 -15.18209 -15.13069 -14.77617 -14.59416 -14.43327 -14.15083 -13.65134 -13.48085 -13.29016 -13.22300 -13.13832 -12.90374 -12.67721 -12.51814 -12.46850 -12.15514 -12.10479 -11.99517 -11.91857 -11.36324 -11.15975 -10.87534 -10.50797 -9.99196 -9.82807 -9.66134 -8.57587 -8.46962 -6.13384 -0.12272 0.05882 0.52705 0.56807 0.79969 1.23719 1.34486 1.43823 1.50293 1.70582 2.07893 2.18115 2.51863 2.83227 3.16721 3.47648 3.52284 3.62443 3.87680 3.92138 4.09018 4.11359 4.14509 4.27197 4.45316 4.49571 4.60579 4.66132 4.66905 4.78091 4.89273 5.06783 5.07933 5.14563 5.21772 5.35539 5.45415 5.53726 5.61040 5.71343 6.02156 6.18373 6.58588 6.97826 7.28963 7.77952 8.75836 Molecular weight = 365.04amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.002107 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.164134 B =13283.333455 C =14671.262692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.015 2.985 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.412 4.412 8 H 0.097 0.903 9 O -0.228 6.228 10 C 0.104 3.896 11 C -0.228 4.228 12 C -0.074 4.074 13 C 0.068 3.932 14 N -0.649 5.649 15 C 0.509 3.491 16 O -0.559 6.559 17 C -0.098 4.098 18 C -0.063 4.063 19 C -0.082 4.082 20 C -0.106 4.106 21 C -0.034 4.034 22 Cl -0.060 7.060 23 C -0.114 4.114 24 C -0.024 4.024 25 Cl -0.061 7.061 26 C -0.080 4.080 27 C -0.181 4.181 28 H 0.273 0.727 29 H 0.115 0.885 30 H 0.124 0.876 31 H 0.427 0.573 32 H 0.129 0.871 33 H 0.153 0.847 34 H 0.169 0.831 35 H 0.161 0.839 36 H 0.147 0.853 37 H 0.166 0.834 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.208 -23.497 3.008 31.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.834 3.166 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.489 4.489 8 H 0.114 0.886 9 O -0.135 6.135 10 C 0.053 3.947 11 C -0.248 4.248 12 C -0.094 4.094 13 C -0.025 4.025 14 N -0.297 5.297 15 C 0.298 3.702 16 O -0.436 6.436 17 C -0.137 4.137 18 C -0.065 4.065 19 C -0.100 4.100 20 C -0.125 4.125 21 C -0.061 4.061 22 Cl -0.031 7.031 23 C -0.134 4.134 24 C -0.051 4.051 25 Cl -0.032 7.032 26 C -0.100 4.100 27 C -0.201 4.201 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.142 0.858 31 H 0.266 0.734 32 H 0.146 0.854 33 H 0.171 0.829 34 H 0.187 0.813 35 H 0.178 0.822 36 H 0.165 0.835 37 H 0.184 0.816 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 19.980 -22.731 3.645 30.482 hybrid contribution -0.174 0.805 0.335 0.889 sum 19.806 -21.925 3.979 29.813 Atomic orbital electron populations 1.70176 1.07856 1.28832 1.48786 1.26529 0.96867 1.02580 0.95916 0.84699 0.77470 0.74555 0.79838 1.18054 1.19368 1.18600 1.21704 0.92320 0.81625 1.53218 0.88601 1.83945 1.35571 1.12447 1.81530 1.19951 0.91295 0.88327 0.95120 1.21086 0.93890 0.99299 1.10533 1.20776 0.99531 0.90855 0.98245 1.17345 0.90796 0.86172 1.08233 1.43158 1.29104 1.13659 1.43771 1.21140 0.81085 0.89543 0.78465 1.90774 1.71677 1.39464 1.41727 1.20804 0.94538 0.96277 1.02102 1.19489 0.95929 0.99058 0.92012 1.21317 0.90710 0.96285 1.01663 1.21434 1.01580 0.99069 0.90401 1.20897 0.90169 1.03531 0.91498 1.98386 1.50350 1.95332 1.59065 1.20974 0.91082 1.00648 1.00674 1.20773 0.87590 1.02789 0.93975 1.98384 1.27729 1.86180 1.90893 1.20786 0.91017 0.98309 0.99879 1.20330 1.00592 0.89455 1.09692 0.91809 0.86732 0.85818 0.73353 0.85359 0.82944 0.81327 0.82187 0.83529 0.81643 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.79 13.67 21.61 0.30 -56.50 16 2 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 3 Si 1.02 43.79 29.55 68.60 2.03 45.82 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.41 -24.52 9.44 67.91 0.64 -23.87 16 8 H 0.10 5.32 5.29 -2.91 -0.02 5.30 16 9 O -0.23 -13.86 9.75 -22.85 -0.22 -14.08 16 10 C 0.10 5.22 6.65 22.59 0.15 5.37 16 11 C -0.23 -10.58 9.13 22.38 0.20 -10.38 16 12 C -0.07 -2.86 8.65 22.38 0.19 -2.67 16 13 C 0.07 2.14 6.28 38.16 0.24 2.38 16 14 N -0.65 -13.53 5.34 -303.38 -1.62 -15.15 16 15 C 0.51 11.33 7.56 87.66 0.66 12.00 16 16 O -0.56 -18.37 13.74 -3.07 -0.04 -18.41 16 17 C -0.10 -1.20 5.35 29.10 0.16 -1.04 16 18 C -0.06 -1.03 4.38 -19.84 -0.09 -1.12 16 19 C -0.08 -1.09 9.68 22.26 0.22 -0.88 16 20 C -0.11 -1.50 9.83 22.30 0.22 -1.28 16 21 C -0.03 -0.58 6.32 22.32 0.14 -0.44 16 22 Cl -0.06 -0.97 28.96 -2.72 -0.08 -1.05 16 23 C -0.11 -2.11 9.61 22.31 0.21 -1.89 16 24 C -0.02 -0.46 6.31 22.32 0.14 -0.32 16 25 Cl -0.06 -1.19 27.40 -2.72 -0.07 -1.27 16 26 C -0.08 -2.48 9.96 22.38 0.22 -2.26 16 27 C -0.18 -7.41 9.98 22.38 0.22 -7.19 16 28 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 29 H 0.11 5.52 5.71 -2.91 -0.02 5.50 16 30 H 0.12 4.67 6.44 -2.91 -0.02 4.66 16 31 H 0.43 4.83 8.82 -92.71 -0.82 4.01 16 32 H 0.13 1.14 7.12 -2.38 -0.02 1.13 16 33 H 0.15 0.64 8.05 -2.39 -0.02 0.62 16 34 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 36 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 37 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -80.20 364.37 4.62 -75.59 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.33 Total: 19.39 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 4.00 Total: -34.35 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -1.33 Total: -71.64 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -0.27 Total: -32.49 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.15 Total: -2.31 kcal Total: -80.20 4.62 -75.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023150696.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.170 kcal (2) G-P(sol) polarization free energy of solvation -80.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds