Wall clock time and date at job start Tue Mar 31 2020 07:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99930 * 2 1 4 4 H 1.48501 * 109.46915 * 239.99678 * 3 2 1 5 5 H 1.48506 * 109.46921 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47393 * 119.99488 * 3 2 1 7 7 C 1.37872 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00266 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99959 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47214 * 179.97438 * 9 7 2 11 11 S 1.65597 * 120.00079 * 164.72113 * 10 9 7 12 12 O 1.42100 * 106.40448 * 178.54099 * 11 10 9 13 13 O 1.42103 * 106.40365 * 311.46606 * 11 10 9 14 14 C 1.76197 * 107.21750 * 65.00357 * 11 10 9 15 15 C 1.38365 * 119.85393 * 269.72851 * 14 11 10 16 16 C 1.37961 * 120.14426 * 179.72257 * 15 14 11 17 17 C 1.39574 * 119.85222 * 0.54886 * 16 15 14 18 18 C 1.47850 * 120.14471 * 179.70517 * 17 16 15 19 19 O 1.21551 * 119.99921 * 180.02562 * 18 17 16 20 20 N 1.34774 * 119.99867 * 0.02562 * 18 17 16 21 21 C 1.46501 * 120.00065 * 179.97438 * 20 18 17 22 22 C 1.52993 * 109.47021 * 179.97438 * 21 20 18 23 23 F 1.39893 * 109.47314 * 60.00610 * 22 21 20 24 24 F 1.39905 * 109.47261 * 180.02562 * 22 21 20 25 25 F 1.39897 * 109.47614 * 300.00135 * 22 21 20 26 26 C 1.39579 * 119.71384 * 359.72355 * 17 16 15 27 27 C 1.37963 * 119.84937 * 0.02562 * 26 17 16 28 28 H 0.97001 * 120.00013 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47652 * 59.99684 * 9 7 2 30 30 H 1.09000 * 109.47217 * 299.99790 * 9 7 2 31 31 H 0.97005 * 119.99811 * 345.00092 * 10 9 7 32 32 H 1.07997 * 119.92606 * 359.97438 * 15 14 11 33 33 H 1.07997 * 120.07149 * 180.24762 * 16 15 14 34 34 H 0.97001 * 120.00208 * 0.02562 * 20 18 17 35 35 H 1.08992 * 109.47251 * 300.00421 * 21 20 18 36 36 H 1.09006 * 109.46784 * 60.00183 * 21 20 18 37 37 H 1.07994 * 120.07623 * 179.97438 * 26 17 16 38 38 H 1.07996 * 119.92309 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 16 1.6896 -5.1410 0.3784 12 8 2.8247 -5.9872 0.2570 13 8 0.9309 -5.0252 1.5744 14 6 0.5614 -5.6383 -0.8803 15 6 -0.7896 -5.3758 -0.7373 16 6 -1.6775 -5.7575 -1.7217 17 6 -1.2118 -6.4199 -2.8586 18 6 -2.1585 -6.8376 -3.9146 19 8 -1.7501 -7.4147 -4.9034 20 7 -3.4743 -6.5784 -3.7809 21 6 -4.4124 -6.9918 -4.8275 22 6 -5.8319 -6.5810 -4.4313 23 9 -5.8892 -5.1919 -4.2761 24 9 -6.7278 -6.9762 -5.4305 25 9 -6.1770 -7.1996 -3.2250 26 6 0.1516 -6.6866 -2.9941 27 6 1.0295 -6.2950 -2.0046 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 3.1350 -3.4540 -0.2169 32 1 -1.1492 -4.8675 0.1451 33 1 -2.7312 -5.5485 -1.6107 34 1 -3.8002 -6.1175 -2.9920 35 1 -4.1433 -6.5101 -5.7675 36 1 -4.3681 -8.0742 -4.9482 37 1 0.5182 -7.1992 -3.8711 38 1 2.0846 -6.5011 -2.1080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024773654.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:41 Heat of formation + Delta-G solvation = -238.149149 kcal Electronic energy + Delta-G solvation = -29989.262615 eV Core-core repulsion = 24929.773427 eV Total energy + Delta-G solvation = -5059.489188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 366.069 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -50.67845 -48.19185 -48.14771 -40.64269 -38.62010 -36.85254 -35.68278 -35.46689 -34.72321 -32.24132 -32.11359 -31.25006 -29.61169 -26.82169 -24.96977 -23.61820 -22.86960 -22.52822 -21.32422 -19.26316 -19.17264 -19.14681 -18.93944 -17.87913 -17.43996 -17.07954 -16.46791 -16.00713 -15.90245 -15.60938 -15.28138 -14.99836 -14.98485 -14.89132 -14.57160 -14.47945 -14.37464 -14.28953 -14.25739 -13.80022 -13.77259 -13.53548 -13.15014 -12.93870 -12.61948 -12.49583 -12.19527 -11.90327 -11.73690 -11.65018 -11.40242 -10.99051 -10.91348 -10.81271 -10.47849 -10.19067 -9.96894 -9.54872 -9.52815 -9.22248 -8.98539 -8.32410 -6.24516 -4.29298 0.16475 0.84875 1.14277 1.91476 2.27996 2.33551 3.10978 3.23083 3.27947 3.29240 3.34504 3.45047 3.62976 3.65446 4.11189 4.16016 4.29332 4.39530 4.54626 4.65912 4.69419 4.81282 5.10428 5.12977 5.31289 5.35915 5.49783 5.75564 5.83750 5.91982 5.98510 6.32516 6.56580 6.71277 7.18136 7.24065 7.53468 7.69243 7.73116 8.09055 8.74318 9.36132 10.85751 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.009634 B = 0.002535 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.783446 B =11042.006876 C =12920.911365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.531 4.531 8 H 0.066 0.934 9 C 0.245 3.755 10 N -1.100 6.100 11 S 2.688 3.312 12 O -0.975 6.975 13 O -0.957 6.957 14 C -0.642 4.642 15 C -0.018 4.018 16 C -0.106 4.106 17 C -0.094 4.094 18 C 0.571 3.429 19 O -0.522 6.522 20 N -0.728 5.728 21 C 0.079 3.921 22 C 0.448 3.552 23 F -0.175 7.175 24 F -0.172 7.172 25 F -0.177 7.177 26 C -0.081 4.081 27 C -0.026 4.026 28 H 0.267 0.733 29 H 0.022 0.978 30 H 0.040 0.960 31 H 0.412 0.588 32 H 0.152 0.848 33 H 0.134 0.866 34 H 0.411 0.589 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.145 0.855 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.866 -14.147 -8.926 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.571 4.571 8 H 0.084 0.916 9 C 0.122 3.878 10 N -0.863 5.863 11 S 2.775 3.225 12 O -0.965 6.965 13 O -0.947 6.947 14 C -0.726 4.726 15 C -0.037 4.037 16 C -0.125 4.125 17 C -0.097 4.097 18 C 0.359 3.641 19 O -0.398 6.398 20 N -0.384 5.384 21 C -0.047 4.047 22 C 0.394 3.606 23 F -0.156 7.156 24 F -0.154 7.154 25 F -0.159 7.159 26 C -0.100 4.100 27 C -0.046 4.046 28 H 0.076 0.924 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.247 0.753 32 H 0.170 0.830 33 H 0.151 0.849 34 H 0.248 0.752 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.162 0.838 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.774 -14.970 -8.901 19.972 hybrid contribution -0.254 1.471 -0.416 1.550 sum -10.028 -13.499 -9.317 19.225 Atomic orbital electron populations 1.69914 1.06050 1.27553 1.49294 1.24960 0.94996 0.99470 0.94677 0.86465 0.79446 0.82168 0.78807 1.20073 1.21093 1.19979 1.21141 0.93469 0.89839 1.52658 0.91590 1.19118 0.87796 0.83530 0.97337 1.55443 1.19731 1.23593 1.87565 1.02033 0.73281 0.73002 0.74180 1.93542 1.49237 1.66605 1.87134 1.93582 1.72811 1.86305 1.41996 1.31596 1.11586 1.11663 1.17802 1.20998 0.91116 0.93260 0.98376 1.21367 1.00161 0.97793 0.93221 1.19964 0.94293 1.00818 0.94643 1.18258 0.81180 0.78322 0.86314 1.90811 1.77682 1.40750 1.30572 1.45587 1.06955 1.62117 1.23716 1.22478 0.83169 1.04750 0.94301 1.20507 0.89464 0.75419 0.75259 1.93261 1.96933 1.30004 1.95429 1.93236 1.70500 1.90632 1.61013 1.93243 1.93572 1.82549 1.46493 1.21324 0.91363 0.98101 0.99251 1.20947 1.00720 0.92230 0.90662 0.92354 0.96003 0.94226 0.75289 0.83002 0.84868 0.75161 0.86352 0.86425 0.83760 0.83369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.41 13.29 55.43 0.74 -23.67 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.53 -13.64 9.27 -34.44 -0.32 -13.96 16 8 H 0.07 1.62 7.65 -52.49 -0.40 1.21 16 9 C 0.25 5.68 5.98 -5.19 -0.03 5.65 16 10 N -1.10 -20.63 5.99 -11.65 -0.07 -20.70 16 11 S 2.69 45.85 5.74 -107.50 -0.62 45.23 16 12 O -0.98 -17.42 17.27 -57.17 -0.99 -18.40 16 13 O -0.96 -18.94 16.73 -57.17 -0.96 -19.90 16 14 C -0.64 -9.52 5.95 -39.49 -0.24 -9.76 16 15 C -0.02 -0.26 9.50 -39.64 -0.38 -0.63 16 16 C -0.11 -1.21 9.54 -39.18 -0.37 -1.58 16 17 C -0.09 -1.11 5.87 -104.97 -0.62 -1.73 16 18 C 0.57 6.31 7.77 -12.33 -0.10 6.22 16 19 O -0.52 -7.04 16.35 5.32 0.09 -6.96 16 20 N -0.73 -5.87 5.37 -61.25 -0.33 -6.20 16 21 C 0.08 0.50 5.64 -4.05 -0.02 0.47 16 22 C 0.45 3.00 3.11 37.15 0.12 3.12 16 23 F -0.17 -1.41 17.18 2.25 0.04 -1.37 16 24 F -0.17 -1.23 17.32 2.25 0.04 -1.19 16 25 F -0.18 -1.33 17.18 2.25 0.04 -1.29 16 26 C -0.08 -0.99 9.60 -39.18 -0.38 -1.37 16 27 C -0.03 -0.35 9.50 -39.64 -0.38 -0.73 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.99 7.75 -51.93 -0.40 0.59 16 31 H 0.41 7.04 8.54 -34.47 -0.29 6.74 16 32 H 0.15 2.05 7.60 -52.49 -0.40 1.66 16 33 H 0.13 1.06 6.41 -52.49 -0.34 0.72 16 34 H 0.41 2.72 6.39 -40.82 -0.26 2.46 16 35 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.14 1.57 7.65 -52.49 -0.40 1.16 16 38 H 0.15 1.70 7.60 -52.49 -0.40 1.30 16 LS Contribution 362.77 15.07 5.47 5.47 Total: -1.00 -33.12 362.77 -7.68 -40.80 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -3.30 Total: 5.74 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -2.81 Total: -12.74 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.34 Total: -50.57 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -1.86 Total: -45.26 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.12 Total: -3.85 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 45.85 SS G_CDS: -0.62 Total: 45.23 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.12 -7.68 -40.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024773654.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.349 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds