Wall clock time and date at job start Tue Mar 31 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86801 * 119.99612 * 2 1 4 4 H 1.48496 * 109.47164 * 240.00080 * 3 2 1 5 5 H 1.48505 * 109.47335 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47209 * 119.99885 * 3 2 1 7 7 C 1.38747 * 120.00530 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00489 * 179.97438 * 7 2 1 9 9 O 1.34920 * 119.99716 * 359.97438 * 7 2 1 10 10 C 1.34315 * 116.99953 * 180.02562 * 9 7 2 11 11 O 1.21210 * 119.99961 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00184 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.87296 * 301.01594 * 12 10 9 14 14 C 1.54322 * 110.01508 * 62.10733 * 12 10 9 15 15 C 1.55154 * 102.94493 * 141.68270 * 14 12 10 16 16 C 1.55131 * 101.48627 * 324.33936 * 15 14 12 17 17 N 1.47015 * 109.88595 * 179.97438 * 12 10 9 18 18 S 1.65602 * 125.64985 * 61.44655 * 17 12 10 19 19 O 1.42099 * 106.40192 * 336.46093 * 18 17 12 20 20 O 1.42095 * 106.40417 * 203.54368 * 18 17 12 21 21 C 1.76195 * 107.21842 * 90.00191 * 18 17 12 22 22 C 1.33348 * 125.18925 * 90.31724 * 21 18 17 23 23 C 1.38475 * 114.93064 * 180.23238 * 22 21 18 24 24 C 1.33501 * 114.88103 * 359.48214 * 23 22 21 25 25 Cl 1.73606 * 125.20941 * 180.24900 * 24 23 22 26 26 S 1.75880 * 125.18821 * 270.02701 * 21 18 17 27 27 H 0.97000 * 120.00892 * 359.97438 * 1 2 3 28 28 H 1.08999 * 110.72209 * 260.05077 * 14 12 10 29 29 H 1.09008 * 110.71732 * 23.32192 * 14 12 10 30 30 H 1.08999 * 111.00076 * 82.57718 * 15 14 12 31 31 H 1.08999 * 111.00872 * 206.38589 * 15 14 12 32 32 H 1.08996 * 110.49462 * 278.45014 * 16 15 14 33 33 H 1.09002 * 110.34415 * 156.05520 * 16 15 14 34 34 H 1.08001 * 122.53531 * 0.02562 * 22 21 18 35 35 H 1.08002 * 122.56228 * 179.76188 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.1020 1.6965 -1.2125 5 1 1.2832 2.7465 0.0006 6 1 3.1020 1.6966 1.2125 7 6 2.0083 -1.2015 -0.0005 8 1 3.0882 -1.2015 -0.0010 9 8 1.3337 -2.3700 -0.0005 10 6 2.0653 -3.4964 -0.0005 11 8 3.2757 -3.4329 -0.0010 12 6 1.3812 -4.8392 -0.0011 13 1 0.7421 -4.9298 0.8772 14 6 0.5375 -5.0016 -1.2830 15 6 0.7492 -6.4938 -1.6517 16 6 2.2267 -6.7094 -1.2309 17 7 2.3861 -5.9123 -0.0016 18 16 3.5154 -6.1777 1.1802 19 8 3.6980 -4.9361 1.8468 20 8 4.5780 -6.8939 0.5663 21 6 2.7920 -7.2722 2.3564 22 6 2.8653 -8.6030 2.3144 23 6 2.2136 -9.2563 3.3468 24 6 1.6201 -8.4539 4.2334 25 17 0.7370 -8.9853 5.6304 26 16 1.8692 -6.7758 3.7691 27 1 -0.4851 0.8400 0.0004 28 1 -0.5143 -4.7998 -1.0806 29 1 0.9105 -4.3521 -2.0750 30 1 0.0790 -7.1361 -1.0803 31 1 0.6216 -6.6537 -2.7223 32 1 2.9011 -6.3481 -2.0072 33 1 2.4124 -7.7638 -1.0264 34 1 3.3902 -9.1313 1.5323 35 1 2.1912 -10.3328 3.4310 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025647871.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:01 Heat of formation + Delta-G solvation = -104.576921 kcal Electronic energy + Delta-G solvation = -26501.460507 eV Core-core repulsion = 22359.533024 eV Total energy + Delta-G solvation = -4141.927483 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 365.004 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -39.51690 -38.40222 -37.68340 -37.10662 -36.89364 -35.61417 -34.90612 -32.09872 -30.88303 -29.96535 -29.55649 -25.37846 -24.73974 -23.14664 -21.46698 -20.72185 -20.39771 -19.34335 -18.25024 -17.68664 -17.37642 -16.96826 -16.45968 -15.67697 -15.29175 -14.97097 -14.53978 -14.37958 -14.30106 -14.11302 -13.80862 -13.63290 -13.27704 -13.17436 -12.79022 -12.40352 -12.18172 -12.05790 -11.85394 -11.80148 -11.68262 -11.50899 -11.39482 -11.18839 -11.16183 -11.09004 -11.04271 -10.75758 -10.41906 -10.24832 -9.75091 -9.50155 -9.37117 -8.94761 -8.68504 -8.50738 -6.35199 -4.01665 -0.04732 0.37845 0.69200 1.31194 1.72499 1.98871 3.03494 3.17947 3.23679 3.27839 3.54933 3.84557 4.03472 4.31387 4.49813 4.57969 4.71147 4.80940 4.99064 5.04438 5.19723 5.33262 5.33906 5.36442 5.46073 5.62185 5.75650 5.82761 5.89845 5.98312 6.14880 6.22416 6.41144 6.81567 7.46996 8.02356 8.77987 9.14194 9.89354 10.82682 Molecular weight = 365.00amu Principal moments of inertia in cm(-1) A = 0.012655 B = 0.003318 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.978054 B = 8436.144590 C = 9211.113395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.042 3.958 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.377 4.377 8 H 0.095 0.905 9 O -0.211 6.211 10 C 0.383 3.617 11 O -0.528 6.528 12 C 0.168 3.832 13 H 0.100 0.900 14 C -0.111 4.111 15 C -0.130 4.130 16 C 0.120 3.880 17 N -0.987 5.987 18 S 2.727 3.273 19 O -0.907 6.907 20 O -0.946 6.946 21 C -0.791 4.791 22 C 0.006 3.994 23 C -0.148 4.148 24 C -0.124 4.124 25 Cl -0.004 7.004 26 S 0.285 5.715 27 H 0.269 0.731 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.162 0.838 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.066 -20.615 3.737 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.161 4.161 3 Si 0.766 3.234 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.453 4.453 8 H 0.113 0.887 9 O -0.118 6.118 10 C 0.226 3.774 11 O -0.423 6.423 12 C 0.060 3.940 13 H 0.118 0.882 14 C -0.150 4.150 15 C -0.169 4.169 16 C -0.004 4.004 17 N -0.825 5.825 18 S 2.812 3.188 19 O -0.897 6.897 20 O -0.936 6.936 21 C -0.990 4.990 22 C -0.029 4.029 23 C -0.181 4.181 24 C -0.271 4.271 25 Cl 0.025 6.975 26 S 0.550 5.450 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.179 0.821 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.579 -18.735 4.656 19.369 hybrid contribution 0.237 -1.134 0.032 1.159 sum -1.342 -19.869 4.687 20.459 Atomic orbital electron populations 1.69974 1.05883 1.27624 1.47082 1.25276 0.95801 0.98672 0.96367 0.85774 0.78643 0.79564 0.79387 1.19553 1.20455 1.19477 1.21185 0.92440 0.79708 1.51973 0.88702 1.83841 1.39002 1.13049 1.75926 1.23250 0.87139 0.87329 0.79689 1.90593 1.15260 1.87523 1.48957 1.20652 0.88165 0.83362 1.01801 0.88241 1.22565 1.00470 0.96385 0.95588 1.22876 0.95323 0.96638 1.02075 1.22104 0.97676 0.94643 0.86020 1.58388 1.52190 1.38684 1.33285 1.01403 0.72156 0.72999 0.72290 1.93714 1.82884 1.38771 1.74326 1.93557 1.49015 1.75339 1.75733 1.36662 1.24929 1.15144 1.22247 1.19813 0.94289 0.91140 0.97679 1.20392 1.00859 1.02022 0.94855 1.26072 1.04373 1.00171 0.96451 1.98396 1.72829 1.89337 1.36948 1.84718 1.45513 0.99450 1.15311 0.92163 0.88687 0.89547 0.90381 0.89564 0.90585 0.90488 0.82056 0.82518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.22 13.67 55.48 0.76 -24.46 16 2 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 3 Si 0.94 21.70 29.55 -169.99 -5.02 16.68 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.38 -11.26 9.64 30.92 0.30 -10.96 16 8 H 0.10 2.90 6.86 -52.49 -0.36 2.54 16 9 O -0.21 -5.98 9.72 -20.71 -0.20 -6.18 16 10 C 0.38 9.44 6.56 36.00 0.24 9.68 16 11 O -0.53 -14.53 13.11 -26.69 -0.35 -14.88 16 12 C 0.17 2.96 3.58 -68.11 -0.24 2.72 16 13 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 14 C -0.11 -1.55 6.45 -24.90 -0.16 -1.71 16 15 C -0.13 -1.28 7.10 -24.46 -0.17 -1.46 16 16 C 0.12 1.43 6.99 -2.44 -0.02 1.42 16 17 N -0.99 -15.68 3.13 -105.55 -0.33 -16.01 16 18 S 2.73 47.21 5.72 -107.50 -0.61 46.60 16 19 O -0.91 -19.90 14.76 -66.58 -0.98 -20.88 16 20 O -0.95 -17.17 17.37 -57.18 -0.99 -18.17 16 21 C -0.79 -10.56 6.57 29.02 0.19 -10.37 16 22 C 0.01 0.06 9.84 -41.20 -0.41 -0.35 16 23 C -0.15 -1.37 10.13 -41.15 -0.42 -1.79 16 24 C -0.12 -1.29 7.10 29.07 0.21 -1.09 16 25 Cl 0.00 -0.03 29.29 -51.86 -1.52 -1.55 16 26 S 0.28 3.62 23.22 -107.50 -2.50 1.12 16 27 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.09 1.34 7.85 -51.92 -0.41 0.93 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.16 1.33 8.05 -52.49 -0.42 0.91 16 35 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 348.27 15.07 5.25 5.25 Total: -1.00 -37.13 348.27 -10.37 -47.50 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -3.28 Total: -2.22 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -0.58 Total: -12.79 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.43 Total: -40.47 kcal Atomic # 8 Polarization: -57.59 SS G_CDS: -2.53 Total: -60.11 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 50.83 SS G_CDS: -3.11 Total: 47.72 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -1.52 Total: -1.55 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.13 -10.37 -47.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025647871.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.076 kcal (2) G-P(sol) polarization free energy of solvation -37.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds