Wall clock time and date at job start Tue Mar 31 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86801 * 120.00168 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99775 * 3 2 1 5 5 H 1.48497 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99752 * 3 2 1 7 7 C 1.38753 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00456 * 180.02562 * 7 2 1 9 9 O 1.34924 * 120.00042 * 359.72295 * 7 2 1 10 10 C 1.34312 * 117.00282 * 180.27691 * 9 7 2 11 11 O 1.21203 * 120.00038 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99759 * 180.02562 * 10 9 7 13 13 H 1.09006 * 109.87394 * 58.98850 * 12 10 9 14 14 C 1.54319 * 109.88635 * 297.80947 * 12 10 9 15 15 C 1.55159 * 102.94359 * 218.39141 * 14 12 10 16 16 C 1.54911 * 101.58142 * 35.50100 * 15 14 12 17 17 N 1.47026 * 109.87995 * 179.97438 * 12 10 9 18 18 S 1.65589 * 125.65332 * 298.39737 * 17 12 10 19 19 O 1.42103 * 106.40577 * 203.54133 * 18 17 12 20 20 O 1.42099 * 106.40290 * 336.46137 * 18 17 12 21 21 C 1.76197 * 107.21932 * 89.99685 * 18 17 12 22 22 C 1.33351 * 125.18845 * 89.72083 * 21 18 17 23 23 C 1.38473 * 114.92897 * 179.79893 * 22 21 18 24 24 C 1.33505 * 114.88517 * 0.49461 * 23 22 21 25 25 Cl 1.73596 * 125.20756 * 179.76081 * 24 23 22 26 26 S 1.75883 * 125.19080 * 270.02627 * 21 18 17 27 27 H 0.97004 * 119.99524 * 0.02562 * 1 2 3 28 28 H 1.08998 * 110.71796 * 336.75506 * 14 12 10 29 29 H 1.09005 * 110.72448 * 100.02716 * 14 12 10 30 30 H 1.09002 * 111.00385 * 277.42931 * 15 14 12 31 31 H 1.08994 * 111.00638 * 153.57302 * 15 14 12 32 32 H 1.08999 * 110.36346 * 204.15343 * 16 15 14 33 33 H 1.08996 * 110.36745 * 81.82909 * 16 15 14 34 34 H 1.07992 * 122.53711 * 359.97438 * 22 21 18 35 35 H 1.08000 * 122.55749 * 180.23904 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.1023 1.6963 -1.2124 5 1 1.2836 2.7465 -0.0006 6 1 3.1022 1.6964 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3336 -2.3701 0.0067 10 6 2.0651 -3.4965 0.0127 11 8 3.2755 -3.4331 0.0128 12 6 1.3809 -4.8392 0.0192 13 1 0.7424 -4.9340 -0.8592 14 6 0.5389 -4.9930 1.3032 15 6 0.7508 -6.4828 1.6814 16 6 2.2242 -6.7046 1.2577 17 7 2.3858 -5.9124 0.0243 18 16 3.5126 -6.1853 -1.1580 19 8 3.8772 -7.5550 -1.0564 20 8 2.9948 -5.6051 -2.3473 21 6 4.9482 -5.2555 -0.7350 22 6 5.9566 -5.6983 0.0168 23 6 6.9823 -4.7887 0.2119 24 6 6.8007 -3.6029 -0.3739 25 17 7.9095 -2.2693 -0.2992 26 16 5.2662 -3.5990 -1.2336 27 1 -0.4850 0.8401 -0.0004 28 1 0.9129 -4.3383 2.0903 29 1 -0.5133 -4.7924 1.1009 30 1 0.0800 -7.1289 1.1151 31 1 0.6254 -6.6355 2.7533 32 1 2.4063 -7.7604 1.0567 33 1 2.9003 -6.3430 2.0324 34 1 5.9735 -6.6921 0.4390 35 1 7.8603 -5.0195 0.7970 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025647875.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:05 Heat of formation + Delta-G solvation = -102.217927 kcal Electronic energy + Delta-G solvation = -27241.458148 eV Core-core repulsion = 23099.632958 eV Total energy + Delta-G solvation = -4141.825189 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 365.004 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -39.66825 -37.79669 -37.72987 -37.01497 -36.40888 -35.72047 -35.20139 -32.30154 -30.87785 -29.61131 -29.34338 -25.55001 -24.14416 -23.20740 -21.46205 -20.66988 -20.14771 -18.81988 -18.29212 -17.92189 -17.51477 -16.96995 -16.06216 -15.56813 -15.33731 -14.84031 -14.66495 -14.47344 -14.39135 -13.79107 -13.43754 -13.28435 -13.16556 -12.92327 -12.64824 -12.46270 -12.03367 -11.92060 -11.81525 -11.71832 -11.60346 -11.54501 -11.41532 -11.24367 -11.14514 -10.85044 -10.76955 -10.68307 -10.55532 -10.20074 -9.96311 -9.54111 -8.99399 -8.71234 -8.61838 -7.78524 -6.53653 -4.20196 0.42490 0.80827 1.36222 2.02537 2.37545 2.57480 3.01008 3.03125 3.12957 3.16213 3.35928 3.82496 3.90762 4.33851 4.37543 4.59548 4.93771 5.02972 5.06621 5.31089 5.41780 5.46654 5.48346 5.66629 5.82797 5.89712 5.90592 5.97406 6.01290 6.14196 6.18195 6.37488 6.42905 6.65370 7.26873 7.81549 8.54780 8.94827 9.68115 10.63194 Molecular weight = 365.00amu Principal moments of inertia in cm(-1) A = 0.007970 B = 0.006108 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.495707 B = 4582.924517 C = 7281.407634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.046 3.954 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.379 4.379 8 H 0.098 0.902 9 O -0.197 6.197 10 C 0.372 3.628 11 O -0.552 6.552 12 C 0.167 3.833 13 H 0.109 0.891 14 C -0.110 4.110 15 C -0.128 4.128 16 C 0.115 3.885 17 N -0.987 5.987 18 S 2.741 3.259 19 O -0.957 6.957 20 O -0.950 6.950 21 C -0.784 4.784 22 C -0.018 4.018 23 C -0.159 4.159 24 C -0.163 4.163 25 Cl -0.024 7.024 26 S 0.433 5.567 27 H 0.272 0.728 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.148 0.852 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.250 -10.622 2.770 12.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.159 4.159 3 Si 0.763 3.237 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.456 4.456 8 H 0.115 0.885 9 O -0.102 6.102 10 C 0.219 3.781 11 O -0.453 6.453 12 C 0.059 3.941 13 H 0.127 0.873 14 C -0.149 4.149 15 C -0.167 4.167 16 C -0.010 4.010 17 N -0.825 5.825 18 S 2.831 3.169 19 O -0.948 6.948 20 O -0.941 6.941 21 C -0.988 4.988 22 C -0.055 4.055 23 C -0.193 4.193 24 C -0.311 4.311 25 Cl 0.005 6.995 26 S 0.704 5.296 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.165 0.835 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.616 -9.694 1.052 11.252 hybrid contribution 1.834 0.573 1.581 2.489 sum 7.450 -9.121 2.633 12.067 Atomic orbital electron populations 1.69973 1.05986 1.28032 1.45372 1.25323 0.95786 0.98843 0.95974 0.85816 0.78826 0.79578 0.79506 1.19281 1.20229 1.19416 1.21202 0.92416 0.79562 1.52386 0.88461 1.83840 1.39213 1.13213 1.73885 1.23821 0.87330 0.87468 0.79484 1.90554 1.14765 1.87863 1.52165 1.20685 0.88398 0.82894 1.02088 0.87306 1.22555 1.00506 0.96488 0.95389 1.22799 0.95331 0.96580 1.01940 1.22122 0.97841 0.95481 0.85526 1.58462 1.46839 1.39906 1.37262 1.00453 0.71637 0.72725 0.72129 1.93551 1.83714 1.30911 1.86610 1.93592 1.78365 1.79286 1.42854 1.35805 1.25034 1.15294 1.22674 1.19406 0.91013 0.99895 0.95191 1.20051 1.02022 0.92052 1.05169 1.26448 0.99427 0.94064 1.11172 1.98347 1.59954 1.43818 1.97395 1.84527 1.01035 1.03336 1.40682 0.91829 0.89752 0.88748 0.90220 0.89623 0.89543 0.91277 0.83455 0.83946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.75 13.67 55.48 0.76 -22.99 16 2 C 0.05 1.22 5.49 -17.53 -0.10 1.13 16 3 Si 0.94 20.38 29.55 -169.99 -5.02 15.36 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 7 C -0.38 -10.33 9.65 30.92 0.30 -10.03 16 8 H 0.10 2.63 6.86 -52.49 -0.36 2.27 16 9 O -0.20 -5.13 9.72 -20.72 -0.20 -5.33 16 10 C 0.37 8.19 7.01 36.00 0.25 8.44 16 11 O -0.55 -12.28 8.98 -19.05 -0.17 -12.45 16 12 C 0.17 2.85 3.35 -68.11 -0.23 2.62 16 13 H 0.11 1.79 8.14 -51.93 -0.42 1.36 16 14 C -0.11 -1.50 6.45 -24.90 -0.16 -1.66 16 15 C -0.13 -1.29 7.09 -24.58 -0.17 -1.46 16 16 C 0.12 1.37 7.11 -2.50 -0.02 1.35 16 17 N -0.99 -15.45 3.14 -105.60 -0.33 -15.78 16 18 S 2.74 47.52 5.53 -107.50 -0.59 46.92 16 19 O -0.96 -16.58 17.13 -57.17 -0.98 -17.56 16 20 O -0.95 -19.05 17.49 -57.17 -1.00 -20.05 16 21 C -0.78 -13.53 5.25 29.03 0.15 -13.38 16 22 C -0.02 -0.27 9.84 -41.20 -0.41 -0.68 16 23 C -0.16 -2.32 10.13 -41.15 -0.42 -2.74 16 24 C -0.16 -2.64 7.10 29.08 0.21 -2.43 16 25 Cl -0.02 -0.34 29.29 -51.86 -1.52 -1.86 16 26 S 0.43 7.99 19.30 -107.50 -2.07 5.92 16 27 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 28 H 0.08 1.25 7.84 -51.93 -0.41 0.85 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.90 7.78 -51.93 -0.40 0.49 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -31.82 341.19 -9.85 -41.67 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -3.27 Total: -0.16 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -0.59 Total: -18.84 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.43 Total: -38.77 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: -2.35 Total: -55.39 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 55.51 SS G_CDS: -2.67 Total: 52.84 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.52 Total: -1.86 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.82 -9.85 -41.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025647875.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.544 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds