Wall clock time and date at job start Tue Mar 31 2020 05:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86801 * 120.00168 * 2 1 4 4 H 1.48496 * 109.47031 * 239.99775 * 3 2 1 5 5 H 1.48497 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47038 * 119.99752 * 3 2 1 7 7 C 1.38753 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00456 * 180.02562 * 7 2 1 9 9 O 1.34924 * 120.00042 * 359.72295 * 7 2 1 10 10 C 1.34312 * 117.00282 * 180.27691 * 9 7 2 11 11 O 1.21203 * 120.00038 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99759 * 180.02562 * 10 9 7 13 13 H 1.09006 * 109.87394 * 58.98850 * 12 10 9 14 14 C 1.54319 * 109.88635 * 297.80947 * 12 10 9 15 15 C 1.55159 * 102.94359 * 218.39141 * 14 12 10 16 16 C 1.54911 * 101.58142 * 35.50100 * 15 14 12 17 17 N 1.47026 * 109.87995 * 179.97438 * 12 10 9 18 18 S 1.65589 * 125.65332 * 298.39737 * 17 12 10 19 19 O 1.42103 * 106.40577 * 203.54133 * 18 17 12 20 20 O 1.42099 * 106.40290 * 336.46137 * 18 17 12 21 21 C 1.76197 * 107.21932 * 89.99685 * 18 17 12 22 22 C 1.33351 * 125.18845 * 89.72083 * 21 18 17 23 23 C 1.38473 * 114.92897 * 179.79893 * 22 21 18 24 24 C 1.33505 * 114.88517 * 0.49461 * 23 22 21 25 25 Cl 1.73596 * 125.20756 * 179.76081 * 24 23 22 26 26 S 1.75883 * 125.19080 * 270.02627 * 21 18 17 27 27 H 0.97004 * 119.99524 * 0.02562 * 1 2 3 28 28 H 1.08998 * 110.71796 * 336.75506 * 14 12 10 29 29 H 1.09005 * 110.72448 * 100.02716 * 14 12 10 30 30 H 1.09002 * 111.00385 * 277.42931 * 15 14 12 31 31 H 1.08994 * 111.00638 * 153.57302 * 15 14 12 32 32 H 1.08999 * 110.36346 * 204.15343 * 16 15 14 33 33 H 1.08996 * 110.36745 * 81.82909 * 16 15 14 34 34 H 1.07992 * 122.53711 * 359.97438 * 22 21 18 35 35 H 1.08000 * 122.55749 * 180.23904 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.1023 1.6963 -1.2124 5 1 1.2836 2.7465 -0.0006 6 1 3.1022 1.6964 1.2125 7 6 2.0082 -1.2016 0.0005 8 1 3.0882 -1.2017 0.0010 9 8 1.3336 -2.3701 0.0067 10 6 2.0651 -3.4965 0.0127 11 8 3.2755 -3.4331 0.0128 12 6 1.3809 -4.8392 0.0192 13 1 0.7424 -4.9340 -0.8592 14 6 0.5389 -4.9930 1.3032 15 6 0.7508 -6.4828 1.6814 16 6 2.2242 -6.7046 1.2577 17 7 2.3858 -5.9124 0.0243 18 16 3.5126 -6.1853 -1.1580 19 8 3.8772 -7.5550 -1.0564 20 8 2.9948 -5.6051 -2.3473 21 6 4.9482 -5.2555 -0.7350 22 6 5.9566 -5.6983 0.0168 23 6 6.9823 -4.7887 0.2119 24 6 6.8007 -3.6029 -0.3739 25 17 7.9095 -2.2693 -0.2992 26 16 5.2662 -3.5990 -1.2336 27 1 -0.4850 0.8401 -0.0004 28 1 0.9129 -4.3383 2.0903 29 1 -0.5133 -4.7924 1.1009 30 1 0.0800 -7.1289 1.1151 31 1 0.6254 -6.6355 2.7533 32 1 2.4063 -7.7604 1.0567 33 1 2.9003 -6.3430 2.0324 34 1 5.9735 -6.6921 0.4390 35 1 7.8603 -5.0195 0.7970 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025647875.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:05 Heat of formation + Delta-G solvation = -123.512467 kcal Electronic energy + Delta-G solvation = -27242.381548 eV Core-core repulsion = 23099.632958 eV Total energy + Delta-G solvation = -4142.748590 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 365.004 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.28603 -39.15643 -39.01334 -38.42537 -37.65293 -37.16002 -36.96603 -34.26842 -32.00373 -30.85219 -30.62913 -27.43838 -25.42128 -24.56726 -22.54203 -22.12237 -21.43817 -20.22953 -19.83458 -19.54938 -18.96840 -18.50943 -17.45095 -16.93346 -16.84496 -16.30343 -16.25174 -16.12392 -15.79983 -15.05738 -14.79454 -14.50245 -14.44775 -14.22655 -13.90059 -13.69797 -13.59791 -13.45108 -13.34110 -13.21883 -12.96084 -12.83844 -12.77877 -12.64668 -12.40059 -12.21489 -12.13832 -12.08436 -11.93628 -11.70801 -11.57093 -11.03732 -10.67010 -10.30648 -9.96446 -9.19869 -8.50660 -6.26384 -0.89554 -0.50875 0.04268 0.69820 1.08265 1.32288 1.32483 1.35498 1.46404 1.67062 1.73390 2.12649 2.54335 2.74577 3.01446 3.10623 3.50639 3.82405 4.06428 4.14341 4.25207 4.31222 4.52524 4.60829 4.66419 4.70622 4.75580 4.87220 4.93895 5.03953 5.15308 5.20342 5.22279 5.30733 5.40962 5.86937 6.70952 6.95824 7.80008 8.69191 Molecular weight = 365.00amu Principal moments of inertia in cm(-1) A = 0.007970 B = 0.006108 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.495707 B = 4582.924517 C = 7281.407634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.000 4.000 3 Si 1.000 3.000 4 H -0.264 1.264 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.405 4.405 8 H 0.088 0.912 9 O -0.231 6.231 10 C 0.369 3.631 11 O -0.549 6.549 12 C 0.166 3.834 13 H 0.112 0.888 14 C -0.108 4.108 15 C -0.111 4.111 16 C 0.102 3.898 17 N -0.986 5.986 18 S 2.749 3.251 19 O -0.956 6.956 20 O -0.986 6.986 21 C -0.791 4.791 22 C -0.004 4.004 23 C -0.149 4.149 24 C -0.158 4.158 25 Cl -0.009 7.009 26 S 0.336 5.664 27 H 0.276 0.724 28 H 0.068 0.932 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.183 0.817 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.432 -12.385 4.592 15.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.201 4.201 3 Si 0.820 3.180 4 H -0.189 1.189 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.481 4.481 8 H 0.105 0.895 9 O -0.138 6.138 10 C 0.215 3.785 11 O -0.448 6.448 12 C 0.058 3.942 13 H 0.130 0.870 14 C -0.147 4.147 15 C -0.149 4.149 16 C -0.021 4.021 17 N -0.825 5.825 18 S 2.840 3.160 19 O -0.947 6.947 20 O -0.977 6.977 21 C -0.996 4.996 22 C -0.041 4.041 23 C -0.182 4.182 24 C -0.306 4.306 25 Cl 0.020 6.980 26 S 0.607 5.393 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.200 0.800 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 6.826 -11.500 2.878 13.679 hybrid contribution 1.665 0.912 1.049 2.169 sum 8.490 -10.588 3.928 14.128 Atomic orbital electron populations 1.70057 1.07391 1.29114 1.47095 1.26311 0.96694 1.01881 0.95229 0.84922 0.77867 0.75523 0.79686 1.18903 1.18702 1.18654 1.21343 0.92234 0.80797 1.53744 0.89460 1.83863 1.40087 1.13894 1.75974 1.25031 0.87883 0.88338 0.77245 1.90647 1.15036 1.88205 1.50946 1.20870 0.88678 0.80398 1.04243 0.87050 1.22581 1.00144 0.99083 0.92933 1.22843 0.94275 0.93674 1.04135 1.22536 0.99390 0.96104 0.84101 1.58421 1.46032 1.39640 1.38370 1.00019 0.71684 0.72456 0.71879 1.93542 1.83815 1.30622 1.86700 1.93548 1.79092 1.79868 1.45193 1.35756 1.25944 1.13986 1.23916 1.19943 0.89757 1.01182 0.93210 1.20499 1.02750 0.90928 1.04021 1.26429 0.98463 0.95178 1.10511 1.98352 1.58997 1.43407 1.97274 1.84819 1.04701 1.05981 1.43794 0.91429 0.91340 0.87706 0.88257 0.86566 0.87380 0.90549 0.80024 0.80270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.34 13.67 21.62 0.30 -51.05 16 2 C 0.00 -0.02 5.49 84.87 0.47 0.44 16 3 Si 1.00 42.47 29.55 68.60 2.03 44.49 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.41 -23.01 9.65 67.94 0.66 -22.35 16 8 H 0.09 4.96 6.86 -2.91 -0.02 4.94 16 9 O -0.23 -12.61 9.72 14.82 0.14 -12.47 16 10 C 0.37 16.74 7.01 71.23 0.50 17.24 16 11 O -0.55 -25.14 8.98 20.80 0.19 -24.95 16 12 C 0.17 5.66 3.35 44.59 0.15 5.81 16 13 H 0.11 3.73 8.14 -2.38 -0.02 3.71 16 14 C -0.11 -2.81 6.45 31.78 0.20 -2.60 16 15 C -0.11 -1.84 7.09 31.99 0.23 -1.62 16 16 C 0.10 2.10 7.11 86.85 0.62 2.72 16 17 N -0.99 -29.56 3.14 -488.01 -1.53 -31.09 16 18 S 2.75 93.37 5.53 -56.49 -0.31 93.06 16 19 O -0.96 -31.19 17.13 -128.00 -2.19 -33.38 16 20 O -0.99 -40.55 17.49 -128.00 -2.24 -42.79 16 21 C -0.79 -26.71 5.25 66.71 0.35 -26.36 16 22 C 0.00 -0.11 9.84 21.22 0.21 0.09 16 23 C -0.15 -3.90 10.13 21.25 0.22 -3.69 16 24 C -0.16 -4.94 7.10 66.75 0.47 -4.47 16 25 Cl -0.01 -0.24 29.29 -2.72 -0.08 -0.32 16 26 S 0.34 12.72 19.30 -56.49 -1.09 11.63 16 27 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.07 2.00 7.84 -2.39 -0.02 1.98 16 29 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.12 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.11 1.81 7.78 -2.39 -0.02 1.79 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.18 3.67 8.06 -2.91 -0.02 3.64 16 35 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -72.29 341.19 0.43 -71.86 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.15 Total: 9.76 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 4.07 Total: -34.76 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -1.23 Total: -82.13 kcal Atomic # 8 Polarization: -109.48 SS G_CDS: -4.10 Total: -113.59 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: 106.09 SS G_CDS: -1.40 Total: 104.69 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.08 Total: -0.32 kcal Total: -72.29 0.43 -71.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025647875.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.648 kcal (2) G-P(sol) polarization free energy of solvation -72.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds