Wall clock time and date at job start Tue Mar 31 2020 07:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00131 * 2 1 4 4 H 1.48496 * 109.47493 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47258 * 300.00473 * 3 2 1 6 6 H 1.48507 * 109.46886 * 60.00270 * 3 2 1 7 7 C 1.37882 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00083 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00006 * 0.02562 * 7 2 1 10 10 N 1.46492 * 109.47350 * 179.97438 * 9 7 2 11 11 C 1.34782 * 120.00518 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99308 * 0.02562 * 11 10 9 13 13 C 1.50693 * 120.00519 * 179.97438 * 11 10 9 14 14 N 1.46902 * 109.47360 * 184.49904 * 13 11 10 15 15 C 1.46901 * 110.99718 * 283.99348 * 14 13 11 16 16 C 1.50701 * 109.46836 * 170.00185 * 15 14 13 17 17 C 1.38246 * 119.98560 * 270.29446 * 16 15 14 18 18 C 1.38217 * 120.00428 * 180.25488 * 17 16 15 19 19 C 1.38322 * 119.99137 * 359.47278 * 18 17 16 20 20 Br 1.89104 * 120.00837 * 180.27547 * 19 18 17 21 21 C 1.38319 * 119.98292 * 0.25097 * 19 18 17 22 22 C 1.38227 * 119.98876 * 0.02562 * 21 19 18 23 23 C 1.46902 * 110.99988 * 160.03998 * 14 13 11 24 24 C 1.53000 * 117.49813 * 12.10158 * 23 14 13 25 25 C 1.52999 * 117.49648 * 303.44221 * 23 14 13 26 26 H 0.96997 * 120.00579 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47116 * 59.99549 * 9 7 2 28 28 H 1.09002 * 109.47190 * 300.00256 * 9 7 2 29 29 H 0.97008 * 120.00065 * 359.97438 * 10 9 7 30 30 H 1.09008 * 109.46927 * 64.49940 * 13 11 10 31 31 H 1.09001 * 109.47354 * 304.50537 * 13 11 10 32 32 H 1.08997 * 109.47078 * 49.99523 * 15 14 13 33 33 H 1.09002 * 109.46943 * 289.99552 * 15 14 13 34 34 H 1.07995 * 119.99880 * 359.97438 * 17 16 15 35 35 H 1.08003 * 120.00082 * 179.74968 * 18 17 16 36 36 H 1.08000 * 120.00866 * 180.02562 * 21 19 18 37 37 H 1.08000 * 119.99133 * 179.97438 * 22 21 19 38 38 H 1.08999 * 115.54965 * 157.77234 * 23 14 13 39 39 H 1.08998 * 117.50241 * 0.02562 * 24 23 14 40 40 H 1.09003 * 117.49609 * 145.02054 * 24 23 14 41 41 H 1.08992 * 117.49676 * 214.98154 * 25 23 14 42 42 H 1.09001 * 117.50062 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 1.7539 -4.8834 -0.0033 12 8 0.5614 -5.1050 -0.0035 13 6 2.7332 -6.0288 -0.0049 14 7 2.0018 -7.2981 -0.1140 15 6 1.3745 -7.6558 1.1653 16 6 0.4396 -8.8195 0.9583 17 6 -0.8840 -8.5925 0.6304 18 6 -1.7431 -9.6595 0.4456 19 6 -1.2756 -10.9545 0.5781 20 35 -2.4486 -12.4147 0.3177 21 6 0.0502 -11.1812 0.9006 22 6 0.9073 -10.1136 1.0908 23 6 2.8827 -8.3742 -0.5874 24 6 4.3877 -8.0990 -0.6047 25 6 3.6055 -8.1611 -1.9190 26 1 -0.4851 0.8400 0.0004 27 1 0.6247 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8880 29 1 3.1568 -3.4353 -0.0029 30 1 3.3063 -6.0181 0.9223 31 1 3.4111 -5.9260 -0.8522 32 1 0.8136 -6.8023 1.5461 33 1 2.1462 -7.9331 1.8834 34 1 -1.2480 -7.5815 0.5231 35 1 -2.7781 -9.4820 0.1934 36 1 0.4158 -12.1922 1.0037 37 1 1.9425 -10.2905 1.3430 38 1 2.5590 -9.3868 -0.3469 39 1 4.7243 -7.1197 -0.2644 40 1 5.0540 -8.9308 -0.3759 41 1 3.7575 -9.0335 -2.5543 42 1 3.4270 -7.2226 -2.4439 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026332230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:26 Heat of formation + Delta-G solvation = 26.924675 kcal Electronic energy + Delta-G solvation = -24055.674269 eV Core-core repulsion = 20468.897987 eV Total energy + Delta-G solvation = -3586.776281 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.13056 -39.02591 -37.86119 -34.53404 -34.02145 -32.44681 -32.26038 -31.21370 -30.13421 -28.15867 -26.41456 -24.92055 -23.06595 -22.69256 -22.37258 -21.45505 -20.34527 -19.40776 -17.60195 -16.84790 -16.34017 -16.00853 -15.60220 -15.44762 -15.03845 -14.83048 -14.63488 -14.17666 -13.82019 -13.65558 -13.53785 -13.13616 -12.94564 -12.58387 -12.31696 -12.11999 -11.96292 -11.62342 -11.47485 -11.29196 -11.10172 -10.96818 -10.95133 -10.91990 -10.87856 -10.48275 -10.43213 -10.32863 -9.39816 -9.13806 -9.05399 -8.75833 -8.74361 -8.14371 -7.87959 -6.18712 -4.25551 0.90744 1.18106 1.44436 3.21729 3.23620 3.29226 3.31908 3.37928 3.66992 3.78234 4.25163 4.41793 4.53387 4.58560 4.74438 4.75537 4.84816 4.90739 5.08065 5.17065 5.18401 5.24547 5.31801 5.47969 5.49347 5.49993 5.56264 5.69154 5.75367 5.83670 5.88184 5.98950 6.01936 6.12299 6.47552 6.68773 6.84615 7.00401 7.30223 7.43079 7.50429 7.65585 7.95343 8.61657 8.77328 9.10284 9.41386 10.91488 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.015541 B = 0.001974 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.246477 B =14181.642144 C =15633.098944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.252 3.748 10 N -0.715 5.715 11 C 0.499 3.501 12 O -0.537 6.537 13 C 0.028 3.972 14 N -0.479 5.479 15 C 0.092 3.908 16 C -0.052 4.052 17 C -0.081 4.081 18 C -0.092 4.092 19 C -0.092 4.092 20 Br -0.062 7.062 21 C -0.096 4.096 22 C -0.114 4.114 23 C 0.019 3.981 24 C -0.224 4.224 25 C -0.172 4.172 26 H 0.265 0.735 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.389 0.611 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.044 0.956 34 H 0.142 0.858 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.216 -26.235 1.752 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.365 5.365 11 C 0.282 3.718 12 O -0.415 6.415 13 C -0.102 4.102 14 N -0.200 5.200 15 C -0.034 4.034 16 C -0.053 4.053 17 C -0.101 4.101 18 C -0.112 4.112 19 C -0.171 4.171 20 Br 0.024 6.976 21 C -0.116 4.116 22 C -0.133 4.133 23 C -0.091 4.091 24 C -0.264 4.264 25 C -0.209 4.209 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.221 0.779 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.062 0.938 34 H 0.160 0.840 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.333 -26.703 1.321 26.769 hybrid contribution 1.832 1.263 0.501 2.281 sum 3.165 -25.440 1.822 25.701 Atomic orbital electron populations 1.69977 1.06098 1.27206 1.48954 1.24954 0.94910 0.99458 0.94719 0.86373 0.79820 0.83012 0.77773 1.19657 1.20785 1.20797 1.21263 0.93277 0.90479 1.53108 0.91895 1.19075 0.88247 0.81877 0.97674 1.46454 1.11050 1.06088 1.72870 1.20272 0.89549 0.84000 0.77967 1.90637 1.16526 1.84601 1.49738 1.22178 0.95875 0.89492 1.02690 1.61420 1.30023 1.00322 1.28246 1.21179 0.95750 0.96872 0.89620 1.19884 0.94575 0.93903 0.96945 1.21271 0.92700 0.99691 0.96392 1.21172 1.00542 0.90597 0.98852 1.21752 0.94551 0.92530 1.08291 1.96691 1.62606 1.42229 1.96102 1.20991 0.91614 0.99615 0.99353 1.21066 0.99479 0.91806 1.00993 1.22843 0.88877 0.96207 1.01132 1.23640 0.96009 1.03610 1.03108 1.23086 1.03178 1.03813 0.90854 0.92489 0.95559 0.95623 0.77893 0.91714 0.88032 0.88010 0.93770 0.84038 0.85018 0.85320 0.85468 0.85798 0.88245 0.88869 0.88478 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.82 13.29 55.43 0.74 -25.08 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.54 -14.48 9.28 -34.44 -0.32 -14.80 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.53 5.43 -5.20 -0.03 6.50 16 10 N -0.72 -14.44 5.55 -61.48 -0.34 -14.78 16 11 C 0.50 9.40 7.57 -10.99 -0.08 9.32 16 12 O -0.54 -12.14 15.05 5.55 0.08 -12.06 16 13 C 0.03 0.38 4.12 -4.98 -0.02 0.36 16 14 N -0.48 -6.32 4.31 -229.51 -0.99 -7.31 16 15 C 0.09 1.16 4.72 -4.97 -0.02 1.13 16 16 C -0.05 -0.62 5.01 -104.62 -0.52 -1.14 16 17 C -0.08 -1.03 9.70 -39.59 -0.38 -1.41 16 18 C -0.09 -1.05 9.79 -39.56 -0.39 -1.43 16 19 C -0.09 -0.98 6.22 -39.52 -0.25 -1.23 16 20 Br -0.06 -0.59 33.70 -68.01 -2.29 -2.89 16 21 C -0.10 -0.93 9.79 -39.56 -0.39 -1.31 16 22 C -0.11 -1.11 7.98 -39.59 -0.32 -1.43 16 23 C 0.02 0.20 5.82 -67.71 -0.39 -0.20 16 24 C -0.22 -1.99 9.57 -26.69 -0.26 -2.24 16 25 C -0.17 -1.70 9.90 -26.69 -0.26 -1.96 16 26 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.39 6.68 8.32 -40.82 -0.34 6.34 16 30 H 0.06 0.75 7.81 -51.92 -0.41 0.34 16 31 H 0.10 1.22 5.52 -51.93 -0.29 0.93 16 32 H 0.10 1.52 6.54 -51.93 -0.34 1.18 16 33 H 0.04 0.47 8.06 -51.93 -0.42 0.05 16 34 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.13 0.97 7.47 -52.49 -0.39 0.58 16 38 H 0.12 1.20 5.29 -51.93 -0.27 0.93 16 39 H 0.10 0.88 6.07 -51.93 -0.32 0.57 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 1.09 7.39 -51.93 -0.38 0.71 16 LS Contribution 368.22 15.07 5.55 5.55 Total: -1.00 -31.05 368.22 -11.65 -42.71 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.65 Total: 6.47 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -3.73 Total: -8.21 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -0.59 Total: -47.17 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.29 Total: -2.89 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.05 -11.65 -42.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026332230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.631 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds