Wall clock time and date at job start Tue Mar 31 2020 07:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00131 * 2 1 4 4 H 1.48496 * 109.47493 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47258 * 300.00473 * 3 2 1 6 6 H 1.48507 * 109.46886 * 60.00270 * 3 2 1 7 7 C 1.37882 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00083 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00006 * 0.02562 * 7 2 1 10 10 N 1.46492 * 109.47350 * 179.97438 * 9 7 2 11 11 C 1.34782 * 120.00518 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99308 * 0.02562 * 11 10 9 13 13 C 1.50693 * 120.00519 * 179.97438 * 11 10 9 14 14 N 1.46902 * 109.47360 * 184.49904 * 13 11 10 15 15 C 1.46901 * 110.99718 * 283.99348 * 14 13 11 16 16 C 1.50701 * 109.46836 * 170.00185 * 15 14 13 17 17 C 1.38246 * 119.98560 * 270.29446 * 16 15 14 18 18 C 1.38217 * 120.00428 * 180.25488 * 17 16 15 19 19 C 1.38322 * 119.99137 * 359.47278 * 18 17 16 20 20 Br 1.89104 * 120.00837 * 180.27547 * 19 18 17 21 21 C 1.38319 * 119.98292 * 0.25097 * 19 18 17 22 22 C 1.38227 * 119.98876 * 0.02562 * 21 19 18 23 23 C 1.46902 * 110.99988 * 160.03998 * 14 13 11 24 24 C 1.53000 * 117.49813 * 12.10158 * 23 14 13 25 25 C 1.52999 * 117.49648 * 303.44221 * 23 14 13 26 26 H 0.96997 * 120.00579 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.47116 * 59.99549 * 9 7 2 28 28 H 1.09002 * 109.47190 * 300.00256 * 9 7 2 29 29 H 0.97008 * 120.00065 * 359.97438 * 10 9 7 30 30 H 1.09008 * 109.46927 * 64.49940 * 13 11 10 31 31 H 1.09001 * 109.47354 * 304.50537 * 13 11 10 32 32 H 1.08997 * 109.47078 * 49.99523 * 15 14 13 33 33 H 1.09002 * 109.46943 * 289.99552 * 15 14 13 34 34 H 1.07995 * 119.99880 * 359.97438 * 17 16 15 35 35 H 1.08003 * 120.00082 * 179.74968 * 18 17 16 36 36 H 1.08000 * 120.00866 * 180.02562 * 21 19 18 37 37 H 1.08000 * 119.99133 * 179.97438 * 22 21 19 38 38 H 1.08999 * 115.54965 * 157.77234 * 23 14 13 39 39 H 1.08998 * 117.50241 * 0.02562 * 24 23 14 40 40 H 1.09003 * 117.49609 * 145.02054 * 24 23 14 41 41 H 1.08992 * 117.49676 * 214.98154 * 25 23 14 42 42 H 1.09001 * 117.50062 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 1.7539 -4.8834 -0.0033 12 8 0.5614 -5.1050 -0.0035 13 6 2.7332 -6.0288 -0.0049 14 7 2.0018 -7.2981 -0.1140 15 6 1.3745 -7.6558 1.1653 16 6 0.4396 -8.8195 0.9583 17 6 -0.8840 -8.5925 0.6304 18 6 -1.7431 -9.6595 0.4456 19 6 -1.2756 -10.9545 0.5781 20 35 -2.4486 -12.4147 0.3177 21 6 0.0502 -11.1812 0.9006 22 6 0.9073 -10.1136 1.0908 23 6 2.8827 -8.3742 -0.5874 24 6 4.3877 -8.0990 -0.6047 25 6 3.6055 -8.1611 -1.9190 26 1 -0.4851 0.8400 0.0004 27 1 0.6247 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8880 29 1 3.1568 -3.4353 -0.0029 30 1 3.3063 -6.0181 0.9223 31 1 3.4111 -5.9260 -0.8522 32 1 0.8136 -6.8023 1.5461 33 1 2.1462 -7.9331 1.8834 34 1 -1.2480 -7.5815 0.5231 35 1 -2.7781 -9.4820 0.1934 36 1 0.4158 -12.1922 1.0037 37 1 1.9425 -10.2905 1.3430 38 1 2.5590 -9.3868 -0.3469 39 1 4.7243 -7.1197 -0.2644 40 1 5.0540 -8.9308 -0.3759 41 1 3.7575 -9.0335 -2.5543 42 1 3.4270 -7.2226 -2.4439 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026332230.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:25 Heat of formation + Delta-G solvation = 7.383468 kcal Electronic energy + Delta-G solvation = -24056.521639 eV Core-core repulsion = 20468.897987 eV Total energy + Delta-G solvation = -3587.623652 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.17526 -40.19084 -39.01163 -36.12959 -35.20567 -34.32575 -33.27059 -32.05726 -31.11756 -29.73410 -27.89139 -25.90870 -24.56064 -23.83311 -23.20084 -22.33682 -21.68403 -20.65738 -19.06766 -18.03761 -17.61734 -17.18156 -16.92798 -16.57340 -16.40556 -16.09390 -15.85886 -15.66579 -14.85407 -14.78455 -14.44501 -14.28119 -14.04883 -13.93309 -13.90492 -13.67605 -13.14300 -12.86406 -12.82674 -12.65061 -12.30900 -12.21666 -12.20222 -11.97905 -11.77066 -11.73413 -11.45053 -11.27251 -11.17847 -10.81053 -10.61922 -9.98124 -9.78059 -9.61238 -9.05953 -8.29144 -6.45471 0.04600 0.33540 0.62353 1.42984 1.43976 1.57352 1.82755 2.21903 2.39365 2.62320 2.92226 3.05896 3.24818 3.63819 3.76875 3.95499 3.98559 4.01405 4.06992 4.14060 4.17489 4.30728 4.34822 4.37791 4.61609 4.63056 4.80674 4.84239 4.92253 5.00921 5.11937 5.12937 5.19273 5.23159 5.26025 5.29189 5.50457 5.59997 5.70633 5.81776 5.86233 5.92289 6.12770 6.66509 6.97592 7.24377 7.56106 8.83205 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.015541 B = 0.001974 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.246477 B =14181.642144 C =15633.098944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.984 3.016 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.270 3.730 10 N -0.711 5.711 11 C 0.493 3.507 12 O -0.581 6.581 13 C 0.046 3.954 14 N -0.504 5.504 15 C 0.097 3.903 16 C -0.061 4.061 17 C -0.105 4.105 18 C -0.100 4.100 19 C -0.100 4.100 20 Br -0.051 7.051 21 C -0.090 4.090 22 C -0.103 4.103 23 C 0.008 3.992 24 C -0.203 4.203 25 C -0.180 4.180 26 H 0.268 0.732 27 H -0.016 1.016 28 H -0.014 1.014 29 H 0.407 0.593 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.136 0.864 39 H 0.102 0.898 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.745 -27.908 2.025 28.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.102 0.898 9 C 0.147 3.853 10 N -0.362 5.362 11 C 0.280 3.720 12 O -0.461 6.461 13 C -0.085 4.085 14 N -0.226 5.226 15 C -0.029 4.029 16 C -0.061 4.061 17 C -0.124 4.124 18 C -0.120 4.120 19 C -0.179 4.179 20 Br 0.034 6.966 21 C -0.110 4.110 22 C -0.122 4.122 23 C -0.101 4.101 24 C -0.242 4.242 25 C -0.218 4.218 26 H 0.077 0.923 27 H 0.002 0.998 28 H 0.004 0.996 29 H 0.242 0.758 30 H 0.112 0.888 31 H 0.140 0.860 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.152 0.848 36 H 0.173 0.827 37 H 0.176 0.824 38 H 0.153 0.847 39 H 0.120 0.880 40 H 0.133 0.867 41 H 0.129 0.871 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.910 -28.415 1.593 28.880 hybrid contribution 0.650 1.680 0.395 1.844 sum 5.561 -26.735 1.988 27.380 Atomic orbital electron populations 1.70142 1.08288 1.28451 1.50148 1.26071 0.95764 1.03931 0.93957 0.85125 0.79155 0.77391 0.77631 1.17529 1.20578 1.20482 1.21660 0.94318 0.90597 1.52571 0.89775 1.18469 0.88636 0.84335 0.93848 1.46182 1.11078 1.05531 1.73438 1.21364 0.90062 0.84664 0.75928 1.90628 1.19070 1.85233 1.51164 1.22046 0.94127 0.87385 1.04935 1.61286 1.31390 1.00974 1.28906 1.21057 0.96092 0.95811 0.89955 1.19905 0.93875 0.94850 0.97518 1.21140 0.93987 0.98775 0.98510 1.21194 1.00593 0.90943 0.99223 1.21906 0.95459 0.92353 1.08205 1.96696 1.62565 1.41251 1.96071 1.21331 0.90921 1.00872 0.97838 1.21301 1.00858 0.90460 0.99620 1.22896 0.89778 0.95618 1.01793 1.23699 0.94716 1.04546 1.01253 1.23148 1.03717 1.03709 0.91251 0.92308 0.99841 0.99575 0.75760 0.88802 0.85980 0.91671 0.91252 0.86987 0.84830 0.82716 0.82414 0.84670 0.87995 0.86673 0.87068 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.98 42.15 29.54 68.60 2.03 44.18 16 4 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.55 -29.91 9.28 25.60 0.24 -29.68 16 8 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.27 14.76 5.43 85.63 0.46 15.22 16 10 N -0.71 -29.38 5.55 -466.80 -2.59 -31.97 16 11 C 0.49 19.16 7.57 87.65 0.66 19.83 16 12 O -0.58 -28.12 15.05 -3.05 -0.05 -28.16 16 13 C 0.05 1.17 4.12 85.55 0.35 1.52 16 14 N -0.50 -12.84 4.31 -880.05 -3.79 -16.63 16 15 C 0.10 2.41 4.72 85.56 0.40 2.82 16 16 C -0.06 -1.41 5.01 -19.86 -0.10 -1.51 16 17 C -0.10 -2.84 9.70 22.27 0.22 -2.62 16 18 C -0.10 -2.36 9.79 22.28 0.22 -2.14 16 19 C -0.10 -2.04 6.22 22.31 0.14 -1.90 16 20 Br -0.05 -0.93 33.70 -20.37 -0.69 -1.61 16 21 C -0.09 -1.51 9.79 22.29 0.22 -1.30 16 22 C -0.10 -1.75 7.98 22.27 0.18 -1.57 16 23 C 0.01 0.14 5.82 44.91 0.26 0.40 16 24 C -0.20 -2.78 9.57 30.62 0.29 -2.49 16 25 C -0.18 -3.11 9.90 30.62 0.30 -2.80 16 26 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 27 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 28 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 29 H 0.41 13.66 8.32 -92.70 -0.77 12.89 16 30 H 0.09 1.90 7.81 -2.38 -0.02 1.88 16 31 H 0.12 2.65 5.52 -2.39 -0.01 2.64 16 32 H 0.06 2.08 6.54 -2.39 -0.02 2.07 16 33 H 0.07 1.32 8.06 -2.39 -0.02 1.30 16 34 H 0.11 3.61 8.06 -2.91 -0.02 3.58 16 35 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 36 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.16 1.70 7.47 -2.91 -0.02 1.68 16 38 H 0.14 2.15 5.29 -2.39 -0.01 2.14 16 39 H 0.10 1.37 6.07 -2.39 -0.01 1.35 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.70 7.39 -2.39 -0.02 1.68 16 Total: -1.00 -71.97 368.22 -0.21 -72.18 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.28 Total: 23.70 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 4.31 Total: -5.64 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -6.09 Total: -104.65 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.05 Total: -28.16 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 35 Polarization: -0.93 SS G_CDS: -0.69 Total: -1.61 kcal Total: -71.97 -0.21 -72.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026332230.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.568 kcal (2) G-P(sol) polarization free energy of solvation -71.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds