Wall clock time and date at job start Tue Mar 31 2020 05:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38132 * 119.97050 * 2 1 4 4 C 1.38843 * 119.94357 * 179.97438 * 3 2 1 5 5 N 1.39969 * 120.05568 * 179.97438 * 4 3 2 6 6 C 1.46502 * 120.00191 * 292.34954 * 5 4 3 7 7 C 1.50700 * 109.47337 * 270.00292 * 6 5 4 8 8 H 1.07999 * 119.99771 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00081 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99839 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99975 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47189 * 90.00173 * 11 9 7 13 13 H 1.48504 * 109.46940 * 210.00073 * 11 9 7 14 14 H 1.48498 * 109.47286 * 329.99985 * 11 9 7 15 15 C 1.34770 * 120.00152 * 112.35603 * 5 4 3 16 16 O 1.21293 * 120.00197 * 5.04446 * 15 5 4 17 17 C 1.50698 * 120.00513 * 185.04717 * 15 5 4 18 18 N 1.46896 * 109.47449 * 186.53370 * 17 15 5 19 19 C 1.46853 * 110.99803 * 66.76661 * 18 17 15 20 20 C 1.53040 * 109.51353 * 185.84225 * 19 18 17 21 21 C 1.53116 * 109.28291 * 300.80617 * 20 19 18 22 22 C 1.52997 * 109.57758 * 177.60106 * 21 20 19 23 23 C 1.53120 * 109.15004 * 57.66555 * 21 20 19 24 24 C 1.46852 * 111.00067 * 190.97281 * 18 17 15 25 25 C 1.38881 * 119.88219 * 0.25116 * 4 3 2 26 26 C 1.38090 * 119.94489 * 359.46939 * 25 4 3 27 27 C 1.38355 * 119.97171 * 179.97438 * 2 1 3 28 28 Cl 1.73602 * 119.94602 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47271 * 90.00693 * 1 2 3 30 30 H 1.09003 * 109.47102 * 210.00464 * 1 2 3 31 31 H 1.09002 * 109.47712 * 330.00053 * 1 2 3 32 32 H 1.08000 * 120.02432 * 359.94970 * 3 2 1 33 33 H 1.08998 * 109.46758 * 30.00318 * 6 5 4 34 34 H 1.08997 * 109.47276 * 150.00070 * 6 5 4 35 35 H 0.97007 * 119.99493 * 180.02562 * 10 9 7 36 36 H 1.09001 * 109.47010 * 66.53330 * 17 15 5 37 37 H 1.09008 * 109.46756 * 306.53621 * 17 15 5 38 38 H 1.09002 * 109.46171 * 305.85383 * 19 18 17 39 39 H 1.08994 * 109.46063 * 65.83290 * 19 18 17 40 40 H 1.09007 * 109.49880 * 60.75843 * 20 19 18 41 41 H 1.08996 * 109.50440 * 180.87117 * 20 19 18 42 42 H 1.09000 * 109.53136 * 297.76639 * 21 20 19 43 43 H 1.09001 * 109.46982 * 300.29328 * 22 21 20 44 44 H 1.08993 * 109.47216 * 60.29472 * 22 21 20 45 45 H 1.08999 * 109.47013 * 180.29706 * 22 21 20 46 46 H 1.09003 * 109.49988 * 182.40052 * 23 21 20 47 47 H 1.08994 * 109.53468 * 62.30959 * 23 21 20 48 48 H 1.09000 * 109.46336 * 294.17437 * 24 18 17 49 49 H 1.08995 * 109.46259 * 54.15743 * 24 18 17 50 50 H 1.08007 * 120.02670 * 179.72471 * 25 4 3 51 51 H 1.08001 * 119.97162 * 180.27469 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1966 0.0000 4 6 3.5855 1.1960 0.0005 5 7 4.2870 2.4071 0.0000 6 6 4.2372 3.2820 -1.1740 7 6 5.3574 2.9230 -2.1160 8 1 6.0385 2.1233 -1.8651 9 6 5.5126 3.6153 -3.2982 10 7 4.6828 4.5887 -3.6040 11 14 6.9007 3.1698 -4.4662 12 1 6.4303 2.1355 -5.4224 13 1 7.3250 4.3799 -5.2151 14 1 8.0502 2.6398 -3.6897 15 6 5.0085 2.7684 1.0794 16 8 5.1250 2.0047 2.0145 17 6 5.6707 4.1214 1.1249 18 7 6.5167 4.2126 2.3223 19 6 7.6533 3.2867 2.2353 20 6 8.4277 3.3026 3.5552 21 6 8.9239 4.7241 3.8334 22 6 9.6477 4.7600 5.1808 23 6 7.7252 5.6762 3.8708 24 6 6.9710 5.5917 2.5419 25 6 4.2768 -0.0085 -0.0042 26 6 3.5822 -1.2020 0.0016 27 6 2.1982 -1.1985 0.0005 28 17 1.3280 -2.7007 0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6569 2.1319 -0.0008 33 1 3.2810 3.1550 -1.6814 34 1 4.3462 4.3197 -0.8588 35 1 4.7918 5.0756 -4.4359 36 1 4.9072 4.8986 1.1594 37 1 6.2853 4.2552 0.2346 38 1 7.2866 2.2787 2.0414 39 1 8.3122 3.5959 1.4239 40 1 7.7730 2.9804 4.3650 41 1 9.2802 2.6270 3.4851 42 1 9.6090 5.0321 3.0435 43 1 8.9625 4.4499 5.9697 44 1 10.5007 4.0821 5.1531 45 1 9.9955 5.7738 5.3795 46 1 8.0756 6.6966 4.0262 47 1 7.0595 5.3921 4.6858 48 1 7.6331 5.8899 1.7290 49 1 6.1087 6.2578 2.5709 50 1 5.3569 -0.0117 -0.0083 51 1 4.1195 -2.1389 0.0024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028928015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:08 Heat of formation + Delta-G solvation = -37.504971 kcal Electronic energy + Delta-G solvation = -31240.524886 eV Core-core repulsion = 27164.360079 eV Total energy + Delta-G solvation = -4076.164807 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.166 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.64350 -40.31081 -39.32426 -37.53677 -36.65506 -35.48324 -34.66775 -33.65535 -31.77292 -31.49964 -29.95983 -29.03020 -27.88299 -26.80517 -25.04631 -24.13781 -23.64983 -23.03023 -22.41626 -20.56596 -20.07108 -18.74686 -18.25085 -17.81760 -17.46726 -17.03740 -16.57454 -16.38945 -16.19264 -15.60459 -15.36410 -15.31624 -15.04465 -14.99268 -14.86925 -14.43332 -14.22378 -14.07450 -13.85246 -13.59818 -13.51007 -13.31977 -13.27086 -13.05456 -13.00575 -12.94857 -12.72022 -12.67395 -12.48968 -12.41432 -12.37126 -12.12560 -12.10236 -11.86070 -11.67892 -11.58049 -11.25671 -11.15866 -10.76916 -10.60075 -10.09266 -9.82447 -9.32075 -9.20533 -8.25807 -6.39845 0.06886 0.26418 1.11171 1.36544 1.39255 1.47168 1.64025 2.03087 2.36145 2.55509 2.95980 3.05355 3.70551 3.75744 3.78766 3.87000 3.88146 3.94398 4.18199 4.22658 4.26190 4.33552 4.38557 4.45406 4.49209 4.50983 4.62954 4.64613 4.77717 4.78462 4.79018 4.82596 4.83193 4.85786 4.95971 5.02441 5.04475 5.07786 5.16283 5.18759 5.23791 5.27361 5.29034 5.36497 5.42446 5.55199 5.57292 5.64921 5.88253 5.98056 6.06171 6.16321 6.42289 6.71093 7.24368 7.34654 8.79746 Molecular weight = 364.17amu Principal moments of inertia in cm(-1) A = 0.007079 B = 0.003400 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3954.166950 B = 8232.307573 C =10855.925948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.066 4.066 3 C -0.125 4.125 4 C 0.155 3.845 5 N -0.566 5.566 6 C 0.256 3.744 7 C -0.547 4.547 8 H 0.048 0.952 9 C 0.029 3.971 10 N -0.914 5.914 11 Si 0.950 3.050 12 H -0.276 1.276 13 H -0.277 1.277 14 H -0.273 1.273 15 C 0.522 3.478 16 O -0.558 6.558 17 C 0.050 3.950 18 N -0.529 5.529 19 C 0.056 3.944 20 C -0.100 4.100 21 C -0.094 4.094 22 C -0.139 4.139 23 C -0.103 4.103 24 C 0.051 3.949 25 C -0.117 4.117 26 C -0.095 4.095 27 C -0.052 4.052 28 Cl -0.057 7.057 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.137 0.863 33 H 0.023 0.977 34 H 0.040 0.960 35 H 0.269 0.731 36 H 0.112 0.888 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.023 0.977 40 H 0.061 0.939 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.032 0.968 49 H 0.083 0.917 50 H 0.114 0.886 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 -2.366 11.067 11.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.067 4.067 3 C -0.145 4.145 4 C 0.064 3.936 5 N -0.295 5.295 6 C 0.137 3.863 7 C -0.585 4.585 8 H 0.066 0.934 9 C -0.172 4.172 10 N -0.553 5.553 11 Si 0.776 3.224 12 H -0.202 1.202 13 H -0.202 1.202 14 H -0.198 1.198 15 C 0.312 3.688 16 O -0.436 6.436 17 C -0.080 4.080 18 N -0.254 5.254 19 C -0.072 4.072 20 C -0.138 4.138 21 C -0.113 4.113 22 C -0.196 4.196 23 C -0.141 4.141 24 C -0.076 4.076 25 C -0.137 4.137 26 C -0.114 4.114 27 C -0.079 4.079 28 Cl -0.028 7.028 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.155 0.845 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.130 0.870 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.050 0.950 49 H 0.102 0.898 50 H 0.132 0.868 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.159 -2.843 11.825 12.163 hybrid contribution 1.125 -0.031 -1.973 2.272 sum 0.967 -2.874 9.852 10.308 Atomic orbital electron populations 1.20906 0.87857 1.04328 1.03824 1.19858 0.98214 0.90174 0.98503 1.21171 0.92380 0.98694 1.02245 1.17941 0.91308 0.86102 0.98267 1.45920 1.47564 1.19334 1.16687 1.19214 0.96889 0.89064 0.81143 1.21559 1.14000 1.18287 1.04680 0.93394 1.25532 0.98270 0.94577 0.98843 1.69984 1.37954 1.22231 1.25107 0.85671 0.79661 0.78009 0.79089 1.20176 1.20175 1.19783 1.20841 0.77751 0.89424 0.80811 1.90603 1.61199 1.54516 1.37293 1.21837 0.98217 0.94608 0.93388 1.61658 1.20055 1.07578 1.36095 1.22101 0.90828 0.96495 0.97798 1.21558 0.98691 0.97677 0.95888 1.21205 0.96773 0.94453 0.98834 1.21747 0.99963 1.02335 0.95562 1.21617 0.96249 1.00105 0.96088 1.22241 0.99390 0.87900 0.98054 1.21166 0.99943 0.91728 1.00904 1.21024 0.92281 0.98549 0.99515 1.20795 0.92174 0.87218 1.07685 1.98325 1.76338 1.31132 1.96974 0.89624 0.89928 0.89958 0.84525 0.95875 0.94158 0.92153 0.86993 0.91916 0.92571 0.95928 0.92053 0.90948 0.91587 0.92699 0.92364 0.91542 0.89383 0.91534 0.94975 0.89846 0.86763 0.82931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.49 9.61 71.24 0.68 -1.81 16 2 C -0.07 -1.97 5.88 -19.86 -0.12 -2.09 16 3 C -0.13 -4.39 9.33 22.39 0.21 -4.18 16 4 C 0.15 6.25 4.83 38.14 0.18 6.43 16 5 N -0.57 -24.28 2.51 -635.29 -1.59 -25.88 16 6 C 0.26 12.05 4.83 85.63 0.41 12.46 16 7 C -0.55 -28.17 9.24 25.60 0.24 -27.94 16 8 H 0.05 2.55 7.81 -2.91 -0.02 2.53 16 9 C 0.03 1.49 5.46 84.65 0.46 1.96 16 10 N -0.91 -49.00 13.29 21.45 0.28 -48.71 16 11 Si 0.95 41.46 29.54 68.60 2.03 43.49 16 12 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 13 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 15 C 0.52 21.94 7.08 87.66 0.62 22.56 16 16 O -0.56 -25.39 14.34 -3.07 -0.04 -25.43 16 17 C 0.05 1.85 3.88 85.56 0.33 2.18 16 18 N -0.53 -17.39 4.34 -900.91 -3.91 -21.30 16 19 C 0.06 1.82 5.12 86.33 0.44 2.27 16 20 C -0.10 -2.60 5.38 30.65 0.16 -2.43 16 21 C -0.09 -1.97 2.79 -10.72 -0.03 -2.00 16 22 C -0.14 -2.28 9.21 71.98 0.66 -1.62 16 23 C -0.10 -2.16 5.38 30.65 0.16 -1.99 16 24 C 0.05 1.33 5.46 86.32 0.47 1.80 16 25 C -0.12 -4.48 9.36 22.39 0.21 -4.27 16 26 C -0.09 -3.00 9.82 22.28 0.22 -2.78 16 27 C -0.05 -1.54 6.32 22.34 0.14 -1.40 16 28 Cl -0.06 -1.37 27.28 -2.72 -0.07 -1.44 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 1.64 6.89 -2.39 -0.02 1.62 16 31 H 0.08 1.62 8.08 -2.39 -0.02 1.60 16 32 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 33 H 0.02 1.16 7.85 -2.39 -0.02 1.14 16 34 H 0.04 1.90 6.56 -2.39 -0.02 1.88 16 35 H 0.27 13.69 8.31 -92.70 -0.77 12.92 16 36 H 0.11 3.78 7.71 -2.39 -0.02 3.76 16 37 H 0.06 2.52 7.59 -2.38 -0.02 2.50 16 38 H 0.06 2.17 6.10 -2.39 -0.01 2.16 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 41 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.08 1.99 8.00 -2.39 -0.02 1.97 16 50 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 51 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -59.89 420.24 3.07 -56.83 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.90 Total: 25.29 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 5.47 Total: -2.84 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -5.22 Total: -95.89 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.04 Total: -25.43 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.07 Total: -1.44 kcal Total: -59.89 3.07 -56.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028928015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.322 kcal (2) G-P(sol) polarization free energy of solvation -59.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds