Wall clock time and date at job start Tue Mar 31 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86799 * 119.99642 * 2 1 4 4 H 1.48506 * 109.47070 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47165 * 300.00232 * 3 2 1 6 6 H 1.48496 * 109.47518 * 60.00309 * 3 2 1 7 7 C 1.38630 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99278 * 179.97438 * 7 2 1 9 9 O 1.34804 * 120.00330 * 359.97438 * 7 2 1 10 10 C 1.35784 * 117.00289 * 174.96617 * 9 7 2 11 11 C 1.38911 * 119.99392 * 5.34058 * 10 9 7 12 12 C 1.38002 * 119.99658 * 180.02562 * 11 10 9 13 13 C 1.38913 * 120.00042 * 0.02562 * 12 11 10 14 14 N 1.39999 * 120.00303 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99607 * 35.12859 * 14 13 12 16 16 O 1.21298 * 119.99875 * 355.48520 * 15 14 13 17 17 C 1.50694 * 119.99945 * 175.49353 * 15 14 13 18 18 C 1.52995 * 109.47123 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47267 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.47549 * 179.97438 * 19 18 17 21 21 N 1.30110 * 124.94982 * 304.98190 * 20 19 18 22 22 C 1.35783 * 109.63993 * 180.02562 * 21 20 19 23 23 C 1.39744 * 133.59514 * 179.97438 * 22 21 20 24 24 C 1.36608 * 119.88299 * 179.72213 * 23 22 21 25 25 C 1.38777 * 120.66839 * 0.27543 * 24 23 22 26 26 C 1.37861 * 120.45262 * 359.97438 * 25 24 23 27 27 C 1.38831 * 119.68412 * 0.02972 * 26 25 24 28 28 N 1.36048 * 124.94646 * 125.59549 * 20 19 18 29 29 H 0.96994 * 126.34940 * 359.39598 * 28 20 19 30 30 C 1.38925 * 119.99878 * 0.25318 * 13 12 11 31 31 C 1.38001 * 119.99385 * 359.48872 * 30 13 12 32 32 H 0.96993 * 119.99629 * 0.02562 * 1 2 3 33 33 H 1.07994 * 120.00027 * 0.02562 * 11 10 9 34 34 H 1.08001 * 119.99660 * 179.97438 * 12 11 10 35 35 H 0.96996 * 120.00076 * 215.12196 * 14 13 12 36 36 H 1.08999 * 109.47481 * 59.99587 * 17 15 14 37 37 H 1.09000 * 109.47125 * 299.99641 * 17 15 14 38 38 H 1.09007 * 109.47460 * 60.00107 * 18 17 15 39 39 H 1.09000 * 109.47072 * 299.99428 * 18 17 15 40 40 H 1.08999 * 109.47217 * 59.99981 * 19 18 17 41 41 H 1.09000 * 109.47245 * 300.00123 * 19 18 17 42 42 H 1.08000 * 120.06027 * 359.97438 * 23 22 21 43 43 H 1.07998 * 119.66677 * 180.29805 * 24 23 22 44 44 H 1.07997 * 119.77569 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.15219 * 180.02562 * 26 25 24 46 46 H 1.07996 * 119.99899 * 179.74448 * 30 13 12 47 47 H 1.08002 * 119.99392 * 180.25483 * 31 30 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7098 1.3465 -0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8910 2.3965 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3350 -2.3680 -0.0005 10 6 2.0704 -3.5045 -0.1072 11 6 3.4579 -3.4372 -0.0982 12 6 4.2054 -4.5921 -0.2072 13 6 3.5704 -5.8218 -0.3264 14 7 4.3286 -6.9934 -0.4375 15 6 5.4949 -7.1069 0.2285 16 8 5.9279 -6.1649 0.8581 17 6 6.2609 -8.4041 0.1909 18 6 7.5384 -8.2663 1.0214 19 6 8.3158 -9.5835 0.9837 20 6 9.5744 -9.4476 1.8014 21 7 10.4788 -8.5281 1.6301 22 6 11.4781 -8.6969 2.5338 23 6 12.6687 -8.0126 2.7930 24 6 13.4886 -8.4315 3.8022 25 6 13.1551 -9.5364 4.5727 26 6 11.9882 -10.2299 4.3317 27 6 11.1427 -9.8188 3.3102 28 7 9.9363 -10.2758 2.8183 29 1 9.4345 -11.0391 3.1444 30 6 2.1828 -5.8885 -0.3412 31 6 1.4354 -4.7340 -0.2269 32 1 -0.4849 0.8400 -0.0004 33 1 3.9515 -2.4811 -0.0059 34 1 5.2841 -4.5397 -0.2006 35 1 4.0147 -7.7234 -0.9936 36 1 6.5222 -8.6420 -0.8403 37 1 5.6437 -9.2026 0.6027 38 1 7.2774 -8.0283 2.0527 39 1 8.1554 -7.4679 0.6092 40 1 8.5768 -9.8220 -0.0473 41 1 7.6986 -10.3816 1.3962 42 1 12.9381 -7.1516 2.1992 43 1 14.4055 -7.8971 4.0026 44 1 13.8137 -9.8548 5.3672 45 1 11.7333 -11.0888 4.9346 46 1 1.6891 -6.8441 -0.4381 47 1 0.3567 -4.7863 -0.2343 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029054875.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:03 Heat of formation + Delta-G solvation = 27.225969 kcal Electronic energy + Delta-G solvation = -29627.758349 eV Core-core repulsion = 25355.574330 eV Total energy + Delta-G solvation = -4272.184019 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.47915 -40.14736 -38.68447 -37.81682 -36.59516 -34.91717 -33.93397 -33.47666 -32.16997 -30.63840 -30.28549 -30.15931 -28.46215 -27.22622 -25.26554 -23.60210 -22.70677 -22.38375 -22.16921 -21.27762 -20.78248 -19.96967 -18.27685 -18.05842 -17.61047 -17.50138 -16.73463 -16.35778 -16.11361 -15.69720 -15.55609 -14.71844 -14.57913 -14.46669 -14.30932 -14.24063 -13.98713 -13.64181 -13.55180 -13.45319 -12.92760 -12.79364 -12.59948 -12.42459 -12.26668 -11.93712 -11.87511 -11.73078 -11.69506 -11.52815 -11.48739 -11.11635 -11.01755 -10.96394 -10.71511 -10.39796 -10.25619 -9.68209 -9.65349 -9.14493 -8.73282 -8.68003 -8.45907 -8.18783 -6.92176 -6.42697 -4.00143 0.59999 1.16893 2.09738 2.23458 2.40325 2.48239 2.86692 3.15790 3.17521 3.23149 3.31947 3.54884 3.73774 4.00005 4.16795 4.50600 4.52457 4.60195 4.65745 4.68309 4.78734 4.95636 5.00022 5.10072 5.11370 5.13259 5.18747 5.21617 5.27557 5.34568 5.40654 5.68786 5.70366 5.77776 5.83349 6.02510 6.10374 6.16652 6.17299 6.18486 6.21513 6.36562 6.52748 6.74808 6.87648 6.93907 7.02780 7.12100 7.33417 7.46283 7.56780 7.71141 7.81025 8.02819 8.40307 9.03410 9.72729 10.75323 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.013024 B = 0.001468 C = 0.001344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.392294 B =19072.917653 C =20830.399235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.178 6.178 10 C 0.146 3.854 11 C -0.220 4.220 12 C -0.064 4.064 13 C 0.032 3.968 14 N -0.662 5.662 15 C 0.502 3.498 16 O -0.524 6.524 17 C -0.138 4.138 18 C -0.097 4.097 19 C -0.042 4.042 20 C 0.291 3.709 21 N -0.485 5.485 22 C 0.049 3.951 23 C -0.063 4.063 24 C -0.129 4.129 25 C -0.104 4.104 26 C -0.113 4.113 27 C 0.044 3.956 28 N -0.600 5.600 29 H 0.422 0.578 30 C -0.094 4.094 31 C -0.179 4.179 32 H 0.269 0.731 33 H 0.130 0.870 34 H 0.125 0.875 35 H 0.401 0.599 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.122 0.878 46 H 0.114 0.886 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.842 -25.953 3.876 33.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.092 3.908 11 C -0.240 4.240 12 C -0.084 4.084 13 C -0.060 4.060 14 N -0.307 5.307 15 C 0.289 3.711 16 O -0.399 6.399 17 C -0.178 4.178 18 C -0.136 4.136 19 C -0.081 4.081 20 C 0.023 3.977 21 N -0.205 5.205 22 C -0.070 4.070 23 C -0.083 4.083 24 C -0.150 4.150 25 C -0.123 4.123 26 C -0.134 4.134 27 C -0.066 4.066 28 N -0.212 5.212 29 H 0.260 0.740 30 C -0.114 4.114 31 C -0.199 4.199 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.235 0.765 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.147 0.853 45 H 0.140 0.860 46 H 0.132 0.868 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 20.782 -24.387 3.748 32.259 hybrid contribution 0.013 -0.664 0.562 0.870 sum 20.796 -25.051 4.311 32.842 Atomic orbital electron populations 1.70058 1.05931 1.27520 1.46312 1.25283 0.95851 0.98820 0.96577 0.85648 0.79256 0.80353 0.78216 1.19021 1.20149 1.20155 1.21391 0.91903 0.80805 1.52503 0.88951 1.83969 1.34306 1.11434 1.78387 1.19416 0.90279 0.88139 0.92954 1.21123 0.93569 0.98826 1.10518 1.20866 0.99849 0.90333 0.97346 1.17276 0.89929 0.85440 1.13356 1.43249 1.21915 1.17572 1.47990 1.20668 0.81329 0.90133 0.78940 1.90739 1.67248 1.40049 1.41902 1.21637 0.97243 0.95986 1.02913 1.21251 0.94535 0.96208 1.01558 1.20250 0.88904 0.99893 0.99032 1.23603 0.97159 0.87581 0.89308 1.70430 1.02193 1.23385 1.24468 1.19131 0.96363 0.96003 0.95463 1.20090 0.91319 0.99209 0.97668 1.20671 1.00250 0.97780 0.96266 1.20897 0.95992 0.95664 0.99780 1.19956 0.94585 1.01682 0.97150 1.18903 0.89166 0.98629 0.99926 1.43101 1.19083 1.28401 1.30585 0.73973 1.20353 0.91476 0.97416 1.02154 1.19986 0.99456 0.89881 1.10527 0.92114 0.85208 0.85674 0.76463 0.88594 0.88837 0.90834 0.89311 0.88262 0.89748 0.85222 0.85299 0.85287 0.86037 0.86785 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.39 -11.09 9.48 30.88 0.29 -10.80 16 8 H 0.09 2.47 5.20 -52.49 -0.27 2.19 16 9 O -0.18 -5.13 9.75 0.02 0.00 -5.13 16 10 C 0.15 3.59 6.65 -39.09 -0.26 3.33 16 11 C -0.22 -5.07 9.16 -39.42 -0.36 -5.44 16 12 C -0.06 -1.31 8.69 -39.42 -0.34 -1.65 16 13 C 0.03 0.57 6.30 -83.62 -0.53 0.04 16 14 N -0.66 -8.58 5.34 -9.82 -0.05 -8.63 16 15 C 0.50 6.62 7.67 -10.99 -0.08 6.54 16 16 O -0.52 -9.47 13.42 5.54 0.07 -9.40 16 17 C -0.14 -1.03 5.70 -27.89 -0.16 -1.19 16 18 C -0.10 -0.86 4.44 -26.73 -0.12 -0.97 16 19 C -0.04 -0.25 5.84 -27.88 -0.16 -0.41 16 20 C 0.29 2.68 7.37 -154.81 -1.14 1.54 16 21 N -0.48 -6.05 11.21 -8.23 -0.09 -6.14 16 22 C 0.05 0.57 7.23 -84.70 -0.61 -0.04 16 23 C -0.06 -0.63 10.05 -39.61 -0.40 -1.02 16 24 C -0.13 -0.98 9.96 -39.97 -0.40 -1.37 16 25 C -0.10 -0.71 10.03 -39.52 -0.40 -1.10 16 26 C -0.11 -0.85 10.07 -39.50 -0.40 -1.24 16 27 C 0.04 0.42 7.30 -83.99 -0.61 -0.20 16 28 N -0.60 -4.52 6.23 -8.00 -0.05 -4.57 16 29 H 0.42 1.63 8.96 -40.82 -0.37 1.26 16 30 C -0.09 -1.63 9.96 -39.41 -0.39 -2.02 16 31 C -0.18 -3.74 9.98 -39.42 -0.39 -4.13 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.13 3.02 5.63 -52.49 -0.30 2.73 16 34 H 0.13 2.56 6.23 -52.49 -0.33 2.23 16 35 H 0.40 3.52 8.82 -40.82 -0.36 3.16 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.79 8.10 -51.93 -0.42 0.36 16 39 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 45 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 46 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 47 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 402.16 15.07 6.06 6.06 Total: -1.00 -37.82 402.16 -10.71 -48.53 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.83 Total: 7.24 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -6.56 Total: -19.16 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.56 Total: -44.09 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.07 Total: -14.52 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.82 -10.71 -48.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029054875.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.754 kcal (2) G-P(sol) polarization free energy of solvation -37.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds