Wall clock time and date at job start Tue Mar 31 2020 06:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86799 * 119.99642 * 2 1 4 4 H 1.48506 * 109.47070 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47165 * 300.00232 * 3 2 1 6 6 H 1.48496 * 109.47518 * 60.00309 * 3 2 1 7 7 C 1.38630 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99278 * 179.97438 * 7 2 1 9 9 O 1.34804 * 120.00330 * 359.97438 * 7 2 1 10 10 C 1.35784 * 117.00289 * 174.96617 * 9 7 2 11 11 C 1.38911 * 119.99392 * 5.34058 * 10 9 7 12 12 C 1.38002 * 119.99658 * 180.02562 * 11 10 9 13 13 C 1.38913 * 120.00042 * 0.02562 * 12 11 10 14 14 N 1.39999 * 120.00303 * 179.97438 * 13 12 11 15 15 C 1.34782 * 119.99607 * 35.12859 * 14 13 12 16 16 O 1.21298 * 119.99875 * 355.48520 * 15 14 13 17 17 C 1.50694 * 119.99945 * 175.49353 * 15 14 13 18 18 C 1.52995 * 109.47123 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.47267 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.47549 * 179.97438 * 19 18 17 21 21 N 1.30110 * 124.94982 * 304.98190 * 20 19 18 22 22 C 1.35783 * 109.63993 * 180.02562 * 21 20 19 23 23 C 1.39744 * 133.59514 * 179.97438 * 22 21 20 24 24 C 1.36608 * 119.88299 * 179.72213 * 23 22 21 25 25 C 1.38777 * 120.66839 * 0.27543 * 24 23 22 26 26 C 1.37861 * 120.45262 * 359.97438 * 25 24 23 27 27 C 1.38831 * 119.68412 * 0.02972 * 26 25 24 28 28 N 1.36048 * 124.94646 * 125.59549 * 20 19 18 29 29 H 0.96994 * 126.34940 * 359.39598 * 28 20 19 30 30 C 1.38925 * 119.99878 * 0.25318 * 13 12 11 31 31 C 1.38001 * 119.99385 * 359.48872 * 30 13 12 32 32 H 0.96993 * 119.99629 * 0.02562 * 1 2 3 33 33 H 1.07994 * 120.00027 * 0.02562 * 11 10 9 34 34 H 1.08001 * 119.99660 * 179.97438 * 12 11 10 35 35 H 0.96996 * 120.00076 * 215.12196 * 14 13 12 36 36 H 1.08999 * 109.47481 * 59.99587 * 17 15 14 37 37 H 1.09000 * 109.47125 * 299.99641 * 17 15 14 38 38 H 1.09007 * 109.47460 * 60.00107 * 18 17 15 39 39 H 1.09000 * 109.47072 * 299.99428 * 18 17 15 40 40 H 1.08999 * 109.47217 * 59.99981 * 19 18 17 41 41 H 1.09000 * 109.47245 * 300.00123 * 19 18 17 42 42 H 1.08000 * 120.06027 * 359.97438 * 23 22 21 43 43 H 1.07998 * 119.66677 * 180.29805 * 24 23 22 44 44 H 1.07997 * 119.77569 * 180.02562 * 25 24 23 45 45 H 1.07997 * 120.15219 * 180.02562 * 26 25 24 46 46 H 1.07996 * 119.99899 * 179.74448 * 30 13 12 47 47 H 1.08002 * 119.99392 * 180.25483 * 31 30 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7098 1.3465 -0.0006 5 1 1.8909 2.3965 -1.2125 6 1 1.8910 2.3965 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3350 -2.3680 -0.0005 10 6 2.0704 -3.5045 -0.1072 11 6 3.4579 -3.4372 -0.0982 12 6 4.2054 -4.5921 -0.2072 13 6 3.5704 -5.8218 -0.3264 14 7 4.3286 -6.9934 -0.4375 15 6 5.4949 -7.1069 0.2285 16 8 5.9279 -6.1649 0.8581 17 6 6.2609 -8.4041 0.1909 18 6 7.5384 -8.2663 1.0214 19 6 8.3158 -9.5835 0.9837 20 6 9.5744 -9.4476 1.8014 21 7 10.4788 -8.5281 1.6301 22 6 11.4781 -8.6969 2.5338 23 6 12.6687 -8.0126 2.7930 24 6 13.4886 -8.4315 3.8022 25 6 13.1551 -9.5364 4.5727 26 6 11.9882 -10.2299 4.3317 27 6 11.1427 -9.8188 3.3102 28 7 9.9363 -10.2758 2.8183 29 1 9.4345 -11.0391 3.1444 30 6 2.1828 -5.8885 -0.3412 31 6 1.4354 -4.7340 -0.2269 32 1 -0.4849 0.8400 -0.0004 33 1 3.9515 -2.4811 -0.0059 34 1 5.2841 -4.5397 -0.2006 35 1 4.0147 -7.7234 -0.9936 36 1 6.5222 -8.6420 -0.8403 37 1 5.6437 -9.2026 0.6027 38 1 7.2774 -8.0283 2.0527 39 1 8.1554 -7.4679 0.6092 40 1 8.5768 -9.8220 -0.0473 41 1 7.6986 -10.3816 1.3962 42 1 12.9381 -7.1516 2.1992 43 1 14.4055 -7.8971 4.0026 44 1 13.8137 -9.8548 5.3672 45 1 11.7333 -11.0888 4.9346 46 1 1.6891 -6.8441 -0.4381 47 1 0.3567 -4.7863 -0.2343 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029054875.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:59 Heat of formation + Delta-G solvation = 1.326444 kcal Electronic energy + Delta-G solvation = -29628.881436 eV Core-core repulsion = 25355.574330 eV Total energy + Delta-G solvation = -4273.307106 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.153 amu Computer time = 3.19 seconds Orbital eigenvalues (eV) -43.10618 -41.46357 -40.34884 -38.45344 -38.17142 -35.64360 -35.34939 -34.17767 -34.12757 -31.87756 -31.34117 -30.90091 -29.68048 -28.23262 -27.21667 -24.56515 -23.84842 -23.34042 -23.00874 -22.60081 -21.44406 -21.13825 -19.93893 -19.17938 -18.82355 -18.19583 -17.98468 -17.86433 -16.91162 -16.46694 -16.27237 -16.24945 -16.05357 -15.53836 -15.43145 -15.28291 -15.08666 -15.04627 -14.82612 -14.65401 -14.20379 -14.18200 -13.60610 -13.40167 -13.31133 -13.20282 -13.03130 -12.77553 -12.67718 -12.54010 -12.46345 -12.43574 -12.34770 -12.13395 -11.77727 -11.61464 -11.41229 -11.11417 -10.94290 -10.76221 -10.49372 -9.83977 -9.34377 -9.11180 -8.60452 -8.48523 -6.15185 -0.01212 0.51321 0.54458 0.56415 1.33428 1.40087 1.51190 1.73344 1.76948 1.92798 2.16286 2.26381 2.81341 2.89859 3.14084 3.17571 3.51115 3.60645 3.74716 3.97157 4.08354 4.09867 4.12296 4.16728 4.23252 4.38937 4.43538 4.47901 4.49989 4.60363 4.63374 4.66924 4.71733 4.77804 4.85454 4.89987 5.07558 5.11809 5.14051 5.20651 5.35461 5.39184 5.45207 5.47473 5.55923 5.57920 5.62110 5.70107 5.96393 6.01272 6.18703 6.46949 6.63332 6.92170 6.96328 7.35143 7.75743 8.74333 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.013024 B = 0.001468 C = 0.001344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.392294 B =19072.917653 C =20830.399235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.019 4.019 3 Si 1.016 2.984 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.414 4.414 8 H 0.095 0.905 9 O -0.228 6.228 10 C 0.104 3.896 11 C -0.232 4.232 12 C -0.080 4.080 13 C 0.062 3.938 14 N -0.650 5.650 15 C 0.497 3.503 16 O -0.579 6.579 17 C -0.121 4.121 18 C -0.092 4.092 19 C -0.033 4.033 20 C 0.286 3.714 21 N -0.537 5.537 22 C 0.008 3.992 23 C -0.095 4.095 24 C -0.125 4.125 25 C -0.104 4.104 26 C -0.114 4.114 27 C 0.029 3.971 28 N -0.587 5.587 29 H 0.439 0.561 30 C -0.077 4.077 31 C -0.180 4.180 32 H 0.273 0.727 33 H 0.112 0.888 34 H 0.122 0.878 35 H 0.429 0.571 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.119 0.881 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.152 0.848 44 H 0.162 0.838 45 H 0.150 0.850 46 H 0.171 0.829 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.023 -30.661 4.045 37.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.217 4.217 3 Si 0.835 3.165 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.490 4.490 8 H 0.112 0.888 9 O -0.135 6.135 10 C 0.054 3.946 11 C -0.252 4.252 12 C -0.100 4.100 13 C -0.032 4.032 14 N -0.297 5.297 15 C 0.287 3.713 16 O -0.458 6.458 17 C -0.160 4.160 18 C -0.132 4.132 19 C -0.071 4.071 20 C 0.019 3.981 21 N -0.259 5.259 22 C -0.110 4.110 23 C -0.115 4.115 24 C -0.145 4.145 25 C -0.124 4.124 26 C -0.135 4.135 27 C -0.081 4.081 28 N -0.201 5.201 29 H 0.281 0.719 30 C -0.096 4.096 31 C -0.200 4.200 32 H 0.082 0.918 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.268 0.732 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.170 0.830 44 H 0.179 0.821 45 H 0.168 0.832 46 H 0.188 0.812 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 21.980 -29.218 3.900 36.770 hybrid contribution -0.152 0.430 0.539 0.706 sum 21.828 -28.788 4.439 36.399 Atomic orbital electron populations 1.70179 1.07759 1.28715 1.48816 1.26502 0.96881 1.02449 0.95874 0.84575 0.77973 0.75134 0.78808 1.18211 1.18894 1.19134 1.21781 0.92315 0.81668 1.53254 0.88787 1.83927 1.35585 1.12418 1.81565 1.19954 0.91003 0.88487 0.95161 1.21095 0.93444 0.99263 1.11362 1.20933 0.99651 0.91023 0.98384 1.17444 0.90719 0.86204 1.08810 1.43229 1.21512 1.16527 1.48447 1.21847 0.80778 0.91499 0.77213 1.90744 1.68387 1.42556 1.44094 1.21686 0.95880 0.93280 1.05134 1.21112 0.95177 0.96855 1.00028 1.20369 0.87574 0.99165 1.00006 1.24194 0.97451 0.86955 0.89519 1.70368 1.03685 1.25604 1.26209 1.19565 0.97143 0.97692 0.96592 1.20293 0.92076 0.99879 0.99226 1.21013 1.00424 0.97956 0.95148 1.21343 0.96175 0.94871 0.99994 1.20374 0.94212 1.02348 0.96529 1.19200 0.90153 0.98375 1.00385 1.43024 1.18551 1.28587 1.29899 0.71877 1.20822 0.91043 0.98346 0.99421 1.20355 1.00394 0.89643 1.09569 0.91761 0.87007 0.86018 0.73190 0.84880 0.84381 0.93406 0.93174 0.86331 0.85494 0.85933 0.83005 0.82063 0.83198 0.81165 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.99 13.67 21.61 0.30 -56.70 16 2 C -0.02 -1.13 5.49 84.82 0.47 -0.66 16 3 Si 1.02 44.75 29.55 68.60 2.03 46.78 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.41 -25.14 9.48 67.91 0.64 -24.49 16 8 H 0.09 5.41 5.20 -2.91 -0.02 5.40 16 9 O -0.23 -14.09 9.75 -22.86 -0.22 -14.31 16 10 C 0.10 5.38 6.65 22.59 0.15 5.53 16 11 C -0.23 -11.24 9.16 22.37 0.20 -11.03 16 12 C -0.08 -3.31 8.69 22.38 0.19 -3.11 16 13 C 0.06 2.04 6.30 38.16 0.24 2.28 16 14 N -0.65 -14.05 5.34 -303.36 -1.62 -15.67 16 15 C 0.50 11.65 7.67 87.65 0.67 12.32 16 16 O -0.58 -20.80 13.42 -3.09 -0.04 -20.84 16 17 C -0.12 -1.23 5.70 29.84 0.17 -1.06 16 18 C -0.09 -1.47 4.44 30.59 0.14 -1.33 16 19 C -0.03 -0.28 5.84 29.85 0.17 -0.10 16 20 C 0.29 4.99 7.37 137.92 1.02 6.00 16 21 N -0.54 -13.98 11.21 -179.96 -2.02 -16.00 16 22 C 0.01 0.19 7.23 39.45 0.29 0.47 16 23 C -0.10 -2.00 10.05 22.25 0.22 -1.78 16 24 C -0.13 -1.81 9.96 22.02 0.22 -1.59 16 25 C -0.10 -1.21 10.03 22.31 0.22 -0.98 16 26 C -0.11 -1.48 10.07 22.32 0.22 -1.25 16 27 C 0.03 0.53 7.30 38.85 0.28 0.82 16 28 N -0.59 -7.87 6.23 -179.22 -1.12 -8.99 16 29 H 0.44 2.15 8.96 -92.71 -0.83 1.32 16 30 C -0.08 -2.40 9.96 22.38 0.22 -2.17 16 31 C -0.18 -7.45 9.98 22.37 0.22 -7.22 16 32 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 33 H 0.11 5.67 5.63 -2.91 -0.02 5.66 16 34 H 0.12 5.13 6.23 -2.91 -0.02 5.11 16 35 H 0.43 4.85 8.82 -92.71 -0.82 4.03 16 36 H 0.13 0.52 8.14 -2.39 -0.02 0.51 16 37 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.05 0.99 8.10 -2.38 -0.02 0.97 16 39 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 40 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.12 2.51 8.06 -2.91 -0.02 2.48 16 43 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.16 0.76 8.06 -2.91 -0.02 0.74 16 45 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 46 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 47 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -94.89 402.16 2.68 -92.22 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: -0.61 Total: 22.89 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 5.98 Total: -29.37 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -4.46 Total: -97.36 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.26 Total: -35.15 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -94.89 2.68 -92.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029054875.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.542 kcal (2) G-P(sol) polarization free energy of solvation -94.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds