Wall clock time and date at job start Tue Mar 31 2020 05:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48494 * 109.47220 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46828 * 299.99886 * 3 2 1 6 6 H 1.48499 * 109.47027 * 59.99721 * 3 2 1 7 7 C 1.39906 * 119.99293 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99571 * 175.54380 * 7 2 1 9 9 C 1.41155 * 120.00720 * 355.55656 * 7 2 1 10 10 C 1.40868 * 120.16304 * 35.00344 * 9 7 2 11 11 C 1.36375 * 119.82898 * 180.25634 * 10 9 7 12 12 C 1.39480 * 120.16649 * 359.48341 * 11 10 9 13 13 N 1.39236 * 119.83106 * 180.30100 * 12 11 10 14 14 C 1.34772 * 120.00141 * 324.70365 * 13 12 11 15 15 O 1.21283 * 119.99696 * 4.29694 * 14 13 12 16 16 C 1.50695 * 120.00428 * 184.29419 * 14 13 12 17 17 N 1.46500 * 109.47478 * 180.02562 * 16 14 13 18 18 C 1.39760 * 120.00113 * 179.97438 * 17 16 14 19 19 C 1.38920 * 120.00750 * 359.72350 * 18 17 16 20 20 C 1.38026 * 119.98734 * 179.74525 * 19 18 17 21 21 C 1.38838 * 120.00953 * 0.52793 * 20 19 18 22 22 N 1.40367 * 119.99117 * 179.72195 * 21 20 19 23 23 C 1.35033 * 127.38254 * 359.73224 * 22 21 20 24 24 N 1.30754 * 107.27432 * 179.84122 * 23 22 21 25 25 N 1.28427 * 110.63878 * 0.44559 * 24 23 22 26 26 N 1.28943 * 110.20080 * 359.71888 * 25 24 23 27 27 C 1.38840 * 120.01974 * 359.75079 * 21 20 19 28 28 C 1.38017 * 120.01109 * 359.97176 * 27 21 20 29 29 C 1.39475 * 120.33350 * 0.27156 * 12 11 10 30 30 C 1.36379 * 120.17254 * 359.97438 * 29 12 11 31 31 H 0.97006 * 119.99623 * 0.02562 * 1 2 3 32 32 H 1.08003 * 120.08833 * 0.03719 * 10 9 7 33 33 H 1.08000 * 119.91454 * 179.75739 * 11 10 9 34 34 H 0.97003 * 120.00025 * 144.71491 * 13 12 11 35 35 H 1.08997 * 109.47495 * 300.00434 * 16 14 13 36 36 H 1.09001 * 109.47446 * 59.99975 * 16 14 13 37 37 H 0.96996 * 120.00045 * 0.02562 * 17 16 14 38 38 H 1.08001 * 120.00814 * 0.02562 * 19 18 17 39 39 H 1.08005 * 119.99986 * 180.30016 * 20 19 18 40 40 H 1.07996 * 126.36384 * 0.02562 * 23 22 21 41 41 H 1.08007 * 119.99370 * 179.97438 * 27 21 20 42 42 H 1.07999 * 120.00756 * 180.02562 * 28 27 21 43 43 H 1.08000 * 119.91806 * 179.97438 * 29 12 11 44 44 H 1.07995 * 120.08860 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.7028 1.3462 0.0006 5 1 1.8841 2.3963 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0857 -1.2132 -0.0721 9 6 1.3055 -2.4323 0.0958 10 6 0.0437 -2.5721 -0.5145 11 6 -0.6315 -3.7527 -0.4138 12 6 -0.0709 -4.8235 0.2822 13 7 -0.7636 -6.0278 0.3754 14 6 -2.1076 -6.0261 0.4762 15 8 -2.7195 -4.9812 0.4075 16 6 -2.8500 -7.3224 0.6743 17 7 -4.2882 -7.0545 0.7524 18 6 -5.1866 -8.1093 0.9351 19 6 -4.7165 -9.4126 1.0369 20 6 -5.6037 -10.4535 1.2226 21 6 -6.9666 -10.1994 1.2966 22 7 -7.8690 -11.2589 1.4796 23 6 -7.5784 -12.5724 1.5961 24 7 -8.7100 -13.2078 1.7556 25 7 -9.6968 -12.3861 1.7384 26 7 -9.2696 -11.1806 1.5747 27 6 -7.4374 -8.8977 1.1892 28 6 -6.5505 -7.8555 1.0092 29 6 1.1803 -4.6943 0.8848 30 6 1.8653 -3.5183 0.7969 31 1 -0.4850 0.8401 -0.0004 32 1 -0.3896 -1.7453 -1.0579 33 1 -1.6008 -3.8601 -0.8779 34 1 -0.2789 -6.8680 0.3679 35 1 -2.6499 -7.9878 -0.1654 36 1 -2.5173 -7.7941 1.5989 37 1 -4.6170 -6.1451 0.6766 38 1 -3.6566 -9.6108 0.9753 39 1 -5.2380 -11.4663 1.3066 40 1 -6.5940 -13.0155 1.5664 41 1 -8.4977 -8.7005 1.2464 42 1 -6.9167 -6.8429 0.9260 43 1 1.6079 -5.5277 1.4224 44 1 2.8342 -3.4199 1.2636 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029398588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:31 Heat of formation + Delta-G solvation = 148.061882 kcal Electronic energy + Delta-G solvation = -29281.954388 eV Core-core repulsion = 25009.188526 eV Total energy + Delta-G solvation = -4272.765862 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.139 amu Computer time = 3.72 seconds Orbital eigenvalues (eV) -43.48152 -40.40111 -39.74476 -37.60460 -36.52071 -34.70438 -34.20383 -33.08113 -32.68969 -31.57159 -30.25190 -29.61040 -29.03698 -27.23807 -25.06642 -24.73430 -24.10902 -22.36786 -22.04253 -21.51598 -20.99838 -19.84126 -19.04596 -18.19480 -17.41893 -17.16793 -16.90390 -16.55058 -16.18020 -15.95407 -15.81689 -15.20402 -14.78369 -14.65185 -14.19432 -14.03706 -14.00233 -13.72842 -13.50179 -13.37469 -13.27537 -12.98771 -12.75662 -12.53191 -12.21442 -12.07400 -11.82385 -11.62217 -11.55432 -11.35828 -11.26741 -11.02038 -10.83765 -10.63407 -10.25589 -10.11475 -10.01738 -9.70722 -9.61038 -9.17557 -8.94329 -7.83324 -7.66758 -7.05023 -6.70938 -4.45324 0.08385 0.80154 1.35845 1.46608 1.93753 2.32566 2.73248 2.84883 2.96066 3.04115 3.08591 3.17561 3.25816 3.52864 3.68948 3.88396 3.90285 4.26346 4.38852 4.51494 4.58807 4.66016 4.72185 4.88610 4.96978 4.99009 5.01462 5.08949 5.37542 5.43304 5.53251 5.70461 5.81190 5.97155 5.98675 6.23277 6.25877 6.57122 6.70214 6.83230 6.91551 7.06381 7.15323 7.28152 7.48073 7.51509 7.79478 7.97051 7.98123 8.07335 8.19758 8.44516 8.56039 8.81931 8.87280 10.19935 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.032779 B = 0.001341 C = 0.001295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.992291 B =20873.620755 C =21608.542691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.461 4.461 8 H 0.077 0.923 9 C 0.102 3.898 10 C -0.145 4.145 11 C -0.091 4.091 12 C -0.005 4.005 13 N -0.644 5.644 14 C 0.491 3.509 15 O -0.523 6.523 16 C 0.102 3.898 17 N -0.721 5.721 18 C 0.241 3.759 19 C -0.183 4.183 20 C -0.062 4.062 21 C 0.048 3.952 22 N -0.306 5.306 23 C 0.214 3.786 24 N -0.334 5.334 25 N -0.044 5.044 26 N -0.085 5.085 27 C -0.044 4.044 28 C -0.175 4.175 29 C -0.109 4.109 30 C -0.204 4.204 31 H 0.279 0.721 32 H 0.131 0.869 33 H 0.107 0.893 34 H 0.397 0.603 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.417 0.583 38 H 0.138 0.862 39 H 0.133 0.867 40 H 0.236 0.764 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.091 0.909 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.243 -19.119 1.432 20.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.147 4.147 3 Si 0.741 3.259 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.491 4.491 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.165 4.165 11 C -0.111 4.111 12 C -0.097 4.097 13 N -0.287 5.287 14 C 0.276 3.724 15 O -0.399 6.399 16 C -0.027 4.027 17 N -0.351 5.351 18 C 0.133 3.867 19 C -0.206 4.206 20 C -0.084 4.084 21 C -0.046 4.046 22 N -0.096 5.096 23 C -0.083 4.083 24 N -0.184 5.184 25 N -0.039 5.039 26 N -0.070 5.070 27 C -0.065 4.065 28 C -0.199 4.199 29 C -0.129 4.129 30 C -0.224 4.224 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.125 0.875 34 H 0.231 0.769 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.257 0.743 38 H 0.156 0.844 39 H 0.151 0.849 40 H 0.252 0.748 41 H 0.158 0.842 42 H 0.156 0.844 43 H 0.110 0.890 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.110 -18.347 1.511 20.540 hybrid contribution 1.541 0.892 0.058 1.781 sum -7.569 -17.456 1.570 19.091 Atomic orbital electron populations 1.69791 1.07313 1.28842 1.37250 1.25917 0.94951 1.01306 0.92523 0.86136 0.80540 0.80755 0.78508 1.18532 1.19906 1.19931 1.19554 0.94789 0.90211 1.44571 0.90461 1.17758 0.92218 0.91884 0.88188 1.21304 0.97023 0.96126 1.02091 1.20611 0.98886 0.93298 0.98280 1.17233 0.95225 0.86881 1.10363 1.42838 1.05693 1.08780 1.71341 1.20318 0.83251 0.90442 0.78349 1.90733 1.67059 1.32726 1.49427 1.21141 0.81777 0.96365 1.03390 1.44610 1.03607 1.08775 1.78078 1.17985 0.89474 0.88132 0.91103 1.20491 1.00161 0.90263 1.09697 1.20543 0.89573 0.99984 0.98268 1.17303 0.87249 0.85779 1.14258 1.48998 1.06724 1.06896 1.46963 1.27315 1.01977 0.81216 0.97807 1.74460 0.95155 1.27130 1.21695 1.78060 1.21224 0.94218 1.10375 1.82638 0.85826 1.16995 1.21525 1.20658 1.00783 0.89435 0.95598 1.20563 0.90675 0.99956 1.08661 1.20068 0.94802 0.97547 1.00475 1.20704 1.01185 0.94620 1.05939 0.91007 0.85174 0.87549 0.76907 0.89022 0.88923 0.74301 0.84425 0.84881 0.74760 0.84209 0.84401 0.89047 0.88407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.68 10.61 55.55 0.59 -20.10 16 2 C 0.07 1.70 5.42 -17.34 -0.09 1.60 16 3 Si 0.92 18.41 29.56 -169.99 -5.03 13.38 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.46 -11.79 9.02 -37.85 -0.34 -12.13 16 8 H 0.08 1.89 7.85 -52.48 -0.41 1.47 16 9 C 0.10 2.60 5.55 -106.80 -0.59 2.01 16 10 C -0.15 -3.69 8.61 -39.26 -0.34 -4.03 16 11 C -0.09 -2.09 8.61 -39.79 -0.34 -2.44 16 12 C -0.01 -0.10 6.31 -83.57 -0.53 -0.63 16 13 N -0.64 -9.26 5.30 -9.74 -0.05 -9.31 16 14 C 0.49 6.85 7.73 -10.99 -0.08 6.76 16 15 O -0.52 -9.74 13.09 5.55 0.07 -9.67 16 16 C 0.10 0.84 5.39 -5.20 -0.03 0.82 16 17 N -0.72 -6.53 5.71 -59.78 -0.34 -6.88 16 18 C 0.24 1.88 6.65 -83.74 -0.56 1.32 16 19 C -0.18 -1.08 9.30 -39.41 -0.37 -1.45 16 20 C -0.06 -0.33 9.48 -39.44 -0.37 -0.71 16 21 C 0.05 0.37 6.71 -83.50 -0.56 -0.19 16 22 N -0.31 -2.69 3.86 -11.71 -0.05 -2.73 16 23 C 0.21 1.50 12.15 -90.17 -1.10 0.40 16 24 N -0.33 -3.54 12.16 29.64 0.36 -3.18 16 25 N -0.04 -0.54 13.39 60.35 0.81 0.26 16 26 N -0.08 -0.97 13.33 60.35 0.80 -0.17 16 27 C -0.04 -0.35 9.69 -39.44 -0.38 -0.73 16 28 C -0.18 -1.35 9.89 -39.41 -0.39 -1.74 16 29 C -0.11 -2.17 9.90 -39.79 -0.39 -2.56 16 30 C -0.20 -4.64 9.74 -39.26 -0.38 -5.02 16 31 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 32 H 0.13 3.49 6.15 -52.48 -0.32 3.17 16 33 H 0.11 2.45 6.22 -52.49 -0.33 2.12 16 34 H 0.40 3.98 8.82 -40.82 -0.36 3.62 16 35 H 0.09 0.54 7.94 -51.93 -0.41 0.13 16 36 H 0.09 0.57 7.96 -51.93 -0.41 0.16 16 37 H 0.42 4.44 7.45 -40.82 -0.30 4.14 16 38 H 0.14 0.54 6.72 -52.49 -0.35 0.19 16 39 H 0.13 0.27 6.87 -52.48 -0.36 -0.09 16 40 H 0.24 0.33 7.19 -52.49 -0.38 -0.04 16 41 H 0.14 1.09 7.76 -52.48 -0.41 0.68 16 42 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.09 1.50 8.06 -52.49 -0.42 1.08 16 44 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 381.88 15.07 5.75 5.75 Total: -1.00 -32.81 381.88 -8.38 -41.19 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -4.45 Total: 10.16 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -6.85 Total: -18.71 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 2.12 Total: -42.10 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.07 Total: -9.67 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.81 -8.38 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029398588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.248 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.72 seconds