Wall clock time and date at job start Tue Mar 31 2020 05:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48494 * 109.47220 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46828 * 299.99886 * 3 2 1 6 6 H 1.48499 * 109.47027 * 59.99721 * 3 2 1 7 7 C 1.39906 * 119.99293 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99571 * 175.54380 * 7 2 1 9 9 C 1.41155 * 120.00720 * 355.55656 * 7 2 1 10 10 C 1.40868 * 120.16304 * 35.00344 * 9 7 2 11 11 C 1.36375 * 119.82898 * 180.25634 * 10 9 7 12 12 C 1.39480 * 120.16649 * 359.48341 * 11 10 9 13 13 N 1.39236 * 119.83106 * 180.30100 * 12 11 10 14 14 C 1.34772 * 120.00141 * 324.70365 * 13 12 11 15 15 O 1.21283 * 119.99696 * 4.29694 * 14 13 12 16 16 C 1.50695 * 120.00428 * 184.29419 * 14 13 12 17 17 N 1.46500 * 109.47478 * 180.02562 * 16 14 13 18 18 C 1.39760 * 120.00113 * 179.97438 * 17 16 14 19 19 C 1.38920 * 120.00750 * 359.72350 * 18 17 16 20 20 C 1.38026 * 119.98734 * 179.74525 * 19 18 17 21 21 C 1.38838 * 120.00953 * 0.52793 * 20 19 18 22 22 N 1.40367 * 119.99117 * 179.72195 * 21 20 19 23 23 C 1.35033 * 127.38254 * 359.73224 * 22 21 20 24 24 N 1.30754 * 107.27432 * 179.84122 * 23 22 21 25 25 N 1.28427 * 110.63878 * 0.44559 * 24 23 22 26 26 N 1.28943 * 110.20080 * 359.71888 * 25 24 23 27 27 C 1.38840 * 120.01974 * 359.75079 * 21 20 19 28 28 C 1.38017 * 120.01109 * 359.97176 * 27 21 20 29 29 C 1.39475 * 120.33350 * 0.27156 * 12 11 10 30 30 C 1.36379 * 120.17254 * 359.97438 * 29 12 11 31 31 H 0.97006 * 119.99623 * 0.02562 * 1 2 3 32 32 H 1.08003 * 120.08833 * 0.03719 * 10 9 7 33 33 H 1.08000 * 119.91454 * 179.75739 * 11 10 9 34 34 H 0.97003 * 120.00025 * 144.71491 * 13 12 11 35 35 H 1.08997 * 109.47495 * 300.00434 * 16 14 13 36 36 H 1.09001 * 109.47446 * 59.99975 * 16 14 13 37 37 H 0.96996 * 120.00045 * 0.02562 * 17 16 14 38 38 H 1.08001 * 120.00814 * 0.02562 * 19 18 17 39 39 H 1.08005 * 119.99986 * 180.30016 * 20 19 18 40 40 H 1.07996 * 126.36384 * 0.02562 * 23 22 21 41 41 H 1.08007 * 119.99370 * 179.97438 * 27 21 20 42 42 H 1.07999 * 120.00756 * 180.02562 * 28 27 21 43 43 H 1.08000 * 119.91806 * 179.97438 * 29 12 11 44 44 H 1.07995 * 120.08860 * 180.02562 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 3.7028 1.3462 0.0006 5 1 1.8841 2.3963 -1.2125 6 1 1.8841 2.3964 1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0857 -1.2132 -0.0721 9 6 1.3055 -2.4323 0.0958 10 6 0.0437 -2.5721 -0.5145 11 6 -0.6315 -3.7527 -0.4138 12 6 -0.0709 -4.8235 0.2822 13 7 -0.7636 -6.0278 0.3754 14 6 -2.1076 -6.0261 0.4762 15 8 -2.7195 -4.9812 0.4075 16 6 -2.8500 -7.3224 0.6743 17 7 -4.2882 -7.0545 0.7524 18 6 -5.1866 -8.1093 0.9351 19 6 -4.7165 -9.4126 1.0369 20 6 -5.6037 -10.4535 1.2226 21 6 -6.9666 -10.1994 1.2966 22 7 -7.8690 -11.2589 1.4796 23 6 -7.5784 -12.5724 1.5961 24 7 -8.7100 -13.2078 1.7556 25 7 -9.6968 -12.3861 1.7384 26 7 -9.2696 -11.1806 1.5747 27 6 -7.4374 -8.8977 1.1892 28 6 -6.5505 -7.8555 1.0092 29 6 1.1803 -4.6943 0.8848 30 6 1.8653 -3.5183 0.7969 31 1 -0.4850 0.8401 -0.0004 32 1 -0.3896 -1.7453 -1.0579 33 1 -1.6008 -3.8601 -0.8779 34 1 -0.2789 -6.8680 0.3679 35 1 -2.6499 -7.9878 -0.1654 36 1 -2.5173 -7.7941 1.5989 37 1 -4.6170 -6.1451 0.6766 38 1 -3.6566 -9.6108 0.9753 39 1 -5.2380 -11.4663 1.3066 40 1 -6.5940 -13.0155 1.5664 41 1 -8.4977 -8.7005 1.2464 42 1 -6.9167 -6.8429 0.9260 43 1 1.6079 -5.5277 1.4224 44 1 2.8342 -3.4199 1.2636 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029398588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:25 Heat of formation + Delta-G solvation = 126.771517 kcal Electronic energy + Delta-G solvation = -29282.877608 eV Core-core repulsion = 25009.188526 eV Total energy + Delta-G solvation = -4273.689081 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.139 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -44.16453 -41.40422 -40.55732 -39.14116 -37.27700 -36.19867 -34.92600 -34.70698 -33.36941 -32.07845 -31.54097 -31.18818 -30.26581 -28.14956 -26.49739 -25.36289 -24.88985 -23.35728 -23.02733 -22.80560 -22.18569 -21.11483 -19.59754 -19.24063 -19.02600 -18.33553 -17.59447 -17.29451 -17.14406 -16.94773 -16.79458 -16.58632 -15.77648 -15.49712 -15.26975 -15.16247 -14.71975 -14.56588 -14.46533 -14.40213 -14.12328 -14.03754 -13.90937 -13.87743 -13.59092 -13.34067 -13.16998 -12.89315 -12.69460 -12.60791 -12.33405 -12.08501 -12.00856 -11.78647 -11.67761 -11.55344 -11.25299 -10.85586 -10.80414 -10.51021 -10.09138 -9.45080 -8.75865 -8.51315 -8.40690 -6.33989 -0.50858 0.32547 0.74937 0.78891 0.89564 1.13628 1.28005 1.38296 1.41215 1.53478 1.72304 1.97002 2.22527 2.59793 2.74746 2.81215 3.16848 3.44437 3.65508 3.73563 3.85900 3.87147 3.96371 4.22066 4.32145 4.35080 4.41598 4.45245 4.48844 4.51272 4.55640 4.88450 4.95372 5.00181 5.12187 5.15980 5.20608 5.30965 5.33673 5.41888 5.46314 5.70577 5.73493 5.86069 6.07137 6.14545 6.18510 6.36072 6.52870 6.68931 6.72316 6.95806 7.01869 7.35462 7.36775 8.41591 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.032779 B = 0.001341 C = 0.001295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.992291 B =20873.620755 C =21608.542691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.023 3.977 3 Si 0.988 3.012 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.496 4.496 8 H 0.079 0.921 9 C 0.064 3.936 10 C -0.170 4.170 11 C -0.107 4.107 12 C 0.020 3.980 13 N -0.636 5.636 14 C 0.489 3.511 15 O -0.575 6.575 16 C 0.115 3.885 17 N -0.734 5.734 18 C 0.232 3.768 19 C -0.175 4.175 20 C -0.047 4.047 21 C 0.033 3.967 22 N -0.306 5.306 23 C 0.231 3.769 24 N -0.363 5.363 25 N -0.073 5.073 26 N -0.115 5.115 27 C -0.058 4.058 28 C -0.188 4.188 29 C -0.104 4.104 30 C -0.211 4.211 31 H 0.281 0.719 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.425 0.575 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.406 0.594 38 H 0.171 0.829 39 H 0.177 0.823 40 H 0.293 0.707 41 H 0.128 0.872 42 H 0.133 0.867 43 H 0.141 0.859 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.837 -22.759 2.318 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.188 4.188 3 Si 0.809 3.191 4 H -0.177 1.177 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.527 4.527 8 H 0.097 0.903 9 C 0.062 3.938 10 C -0.190 4.190 11 C -0.128 4.128 12 C -0.074 4.074 13 N -0.282 5.282 14 C 0.277 3.723 15 O -0.454 6.454 16 C -0.012 4.012 17 N -0.363 5.363 18 C 0.125 3.875 19 C -0.198 4.198 20 C -0.069 4.069 21 C -0.060 4.060 22 N -0.096 5.096 23 C -0.064 4.064 24 N -0.214 5.214 25 N -0.067 5.067 26 N -0.101 5.101 27 C -0.079 4.079 28 C -0.211 4.211 29 C -0.124 4.124 30 C -0.231 4.231 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.263 0.737 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.243 0.757 38 H 0.188 0.812 39 H 0.195 0.805 40 H 0.308 0.692 41 H 0.146 0.854 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.696 -22.069 2.398 23.187 hybrid contribution 0.733 1.801 -0.211 1.956 sum -5.963 -20.268 2.187 21.239 Atomic orbital electron populations 1.69911 1.08875 1.29687 1.39052 1.26806 0.95663 1.04640 0.91705 0.85061 0.79354 0.76136 0.78533 1.17680 1.19367 1.19563 1.19805 0.94985 0.91243 1.46674 0.90332 1.18080 0.92722 0.93266 0.89719 1.21161 0.97971 0.96501 1.03399 1.20661 0.98693 0.93978 0.99425 1.17291 0.95099 0.87913 1.07082 1.42729 1.06136 1.07943 1.71349 1.21388 0.82808 0.91982 0.76104 1.90736 1.68048 1.35455 1.51161 1.21265 0.80465 0.92907 1.06570 1.44687 1.04137 1.08581 1.78929 1.18139 0.88996 0.88792 0.91585 1.20871 1.01825 0.89022 1.08129 1.20987 0.87922 1.02026 0.95917 1.17597 0.88204 0.85173 1.15044 1.49069 1.05915 1.07928 1.46682 1.28354 1.02986 0.80161 0.94924 1.74371 0.96124 1.27921 1.22985 1.78044 1.22469 0.94735 1.11492 1.82581 0.87815 1.17014 1.22673 1.20647 1.00443 0.90284 0.96504 1.20581 0.91307 0.99822 1.09395 1.20466 0.94260 0.97990 0.99700 1.20975 1.01894 0.94868 1.05314 0.90824 0.88069 0.88344 0.73682 0.85281 0.85372 0.75695 0.81197 0.80528 0.69178 0.85382 0.84889 0.84154 0.87075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.11 10.61 21.82 0.23 -45.88 16 2 C 0.02 1.18 5.42 85.24 0.46 1.65 16 3 Si 0.99 38.88 29.56 68.60 2.03 40.91 16 4 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.50 -26.44 9.02 23.39 0.21 -26.23 16 8 H 0.08 3.97 7.85 -2.91 -0.02 3.95 16 9 C 0.06 3.40 5.55 -21.28 -0.12 3.28 16 10 C -0.17 -9.12 8.61 22.48 0.19 -8.93 16 11 C -0.11 -5.07 8.61 22.13 0.19 -4.88 16 12 C 0.02 0.75 6.31 38.56 0.24 1.00 16 13 N -0.64 -15.92 5.30 -303.13 -1.61 -17.53 16 14 C 0.49 12.26 7.73 87.66 0.68 12.94 16 15 O -0.57 -21.24 13.09 -3.04 -0.04 -21.28 16 16 C 0.11 1.35 5.39 85.63 0.46 1.81 16 17 N -0.73 -11.39 5.71 -343.04 -1.96 -13.35 16 18 C 0.23 2.95 6.65 38.21 0.25 3.20 16 19 C -0.18 -1.15 9.30 22.38 0.21 -0.94 16 20 C -0.05 -0.26 9.48 22.36 0.21 -0.05 16 21 C 0.03 0.42 6.71 38.06 0.26 0.68 16 22 N -0.31 -4.79 3.86 -190.96 -0.74 -5.53 16 23 C 0.23 2.49 12.15 180.19 2.19 4.68 16 24 N -0.36 -7.22 12.16 -60.15 -0.73 -7.95 16 25 N -0.07 -1.81 13.39 37.02 0.50 -1.32 16 26 N -0.12 -2.67 13.33 37.02 0.49 -2.18 16 27 C -0.06 -0.90 9.69 22.36 0.22 -0.68 16 28 C -0.19 -2.79 9.89 22.38 0.22 -2.57 16 29 C -0.10 -3.86 9.90 22.13 0.22 -3.64 16 30 C -0.21 -9.41 9.74 22.48 0.22 -9.19 16 31 H 0.28 14.04 8.30 -92.70 -0.77 13.27 16 32 H 0.10 5.90 6.15 -2.91 -0.02 5.89 16 33 H 0.10 4.73 6.22 -2.91 -0.02 4.71 16 34 H 0.42 6.12 8.82 -92.71 -0.82 5.30 16 35 H 0.13 0.66 7.94 -2.39 -0.02 0.64 16 36 H 0.13 0.71 7.96 -2.39 -0.02 0.69 16 37 H 0.41 8.41 7.45 -92.71 -0.69 7.72 16 38 H 0.17 0.02 6.72 -2.91 -0.02 0.00 16 39 H 0.18 -0.61 6.87 -2.91 -0.02 -0.63 16 40 H 0.29 -0.95 7.19 -2.91 -0.02 -0.97 16 41 H 0.13 2.18 7.76 -2.91 -0.02 2.16 16 42 H 0.13 1.96 8.06 -2.91 -0.02 1.93 16 43 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 44 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -81.05 381.88 4.09 -76.96 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -0.41 Total: 25.02 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: 6.32 Total: -27.87 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -3.81 Total: -93.73 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.04 Total: -21.28 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -81.05 4.09 -76.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029398588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.731 kcal (2) G-P(sol) polarization free energy of solvation -81.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds