Wall clock time and date at job start Tue Mar 31 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34779 * 120.00168 * 2 1 4 4 O 1.21727 * 119.99827 * 180.02562 * 3 2 1 5 5 C 1.46254 * 119.99990 * 359.97438 * 3 2 1 6 6 C 1.35022 * 119.99811 * 179.97438 * 5 3 2 7 7 C 1.46956 * 119.99715 * 180.02562 * 6 5 3 8 8 C 1.40020 * 120.10178 * 359.72543 * 7 6 5 9 9 C 1.37603 * 119.89646 * 179.72168 * 8 7 6 10 10 C 1.39180 * 120.10180 * 0.53316 * 9 8 7 11 11 O 1.35570 * 119.89847 * 179.74505 * 10 9 8 12 12 C 1.34781 * 116.99731 * 174.47164 * 11 10 9 13 13 H 1.07991 * 120.00096 * 5.04636 * 12 11 10 14 14 C 1.38723 * 119.99635 * 185.05853 * 12 11 10 15 15 N 1.31509 * 120.00246 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 119.99843 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47532 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47631 * 119.99654 * 16 14 12 19 19 H 1.48504 * 109.46947 * 239.99519 * 16 14 12 20 20 C 1.39177 * 120.20069 * 359.76570 * 10 9 8 21 21 C 1.37598 * 120.10210 * 359.95390 * 20 10 9 22 22 C 1.46502 * 120.00026 * 179.97438 * 2 1 3 23 23 H 1.09002 * 110.05447 * 181.40518 * 22 2 1 24 24 C 1.53881 * 110.02664 * 59.99913 * 22 2 1 25 25 C 1.54169 * 108.70354 * 193.52750 * 24 22 2 26 26 S 1.82919 * 105.08380 * 27.91104 * 25 24 22 27 27 O 1.42104 * 109.35263 * 111.27180 * 26 25 24 28 28 O 1.42103 * 109.35525 * 244.47307 * 26 25 24 29 29 C 1.55052 * 110.02600 * 302.81020 * 22 2 1 30 30 H 1.09000 * 109.47055 * 270.00522 * 1 2 3 31 31 H 1.09000 * 109.46775 * 30.00169 * 1 2 3 32 32 H 1.08995 * 109.47260 * 149.99823 * 1 2 3 33 33 H 1.07994 * 119.99907 * 0.02562 * 5 3 2 34 34 H 1.08004 * 120.00436 * 0.02562 * 6 5 3 35 35 H 1.07994 * 120.05459 * 359.97438 * 8 7 6 36 36 H 1.08000 * 119.95180 * 180.27898 * 9 8 7 37 37 H 0.96995 * 120.00211 * 180.02562 * 15 14 12 38 38 H 1.08004 * 119.94473 * 179.97438 * 20 10 9 39 39 H 1.08002 * 120.04553 * 179.97438 * 21 20 10 40 40 H 1.08994 * 109.64380 * 73.67705 * 24 22 2 41 41 H 1.08997 * 109.53584 * 313.31940 * 24 22 2 42 42 H 1.08989 * 110.32240 * 269.00999 * 25 24 22 43 43 H 1.09006 * 110.31596 * 146.80825 * 25 24 22 44 44 H 1.08999 * 110.79009 * 43.45662 * 29 22 2 45 45 H 1.09004 * 110.78865 * 279.99080 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3561 1.1671 -0.0005 5 6 1.4076 2.4338 -0.0006 6 6 2.0828 3.6031 0.0000 7 6 1.3480 4.8758 0.0000 8 6 -0.0521 4.8783 -0.0064 9 6 -0.7359 6.0724 -0.0006 10 6 -0.0378 7.2765 0.0004 11 8 -0.7157 8.4506 0.0009 12 6 0.0136 9.5780 0.1175 13 1 1.0922 9.5253 0.1231 14 6 -0.6214 10.8062 0.2307 15 7 -1.9349 10.8704 0.2237 16 14 0.3892 12.3687 0.3931 17 1 1.8344 12.0277 0.3751 18 1 0.0806 13.2779 -0.7398 19 1 0.0560 13.0428 1.6737 20 6 1.3539 7.2789 0.0004 21 6 2.0461 6.0897 0.0004 22 6 2.1975 -1.2687 0.0006 23 1 3.2708 -1.0806 0.0256 24 6 1.8349 -2.0871 -1.2511 25 6 2.3397 -3.5313 -1.0609 26 16 2.3345 -3.8030 0.7480 27 8 1.3235 -4.7449 1.0798 28 8 3.6673 -4.0042 1.1979 29 6 1.7793 -2.1227 1.2253 30 1 -0.3633 0.0001 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8899 -0.5138 33 1 0.3277 2.4338 -0.0006 34 1 3.1629 3.6031 0.0004 35 1 -0.5947 3.9445 -0.0117 36 1 -1.8159 6.0754 -0.0009 37 1 -2.3790 11.7292 0.3025 38 1 1.8914 8.2157 0.0008 39 1 3.1261 6.0926 0.0000 40 1 2.3091 -1.6456 -2.1276 41 1 0.7530 -2.0914 -1.3830 42 1 3.3502 -3.6342 -1.4561 43 1 1.6671 -4.2351 -1.5513 44 1 0.6985 -2.0972 1.3639 45 1 2.2941 -1.7863 2.1254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031611304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:38 Heat of formation + Delta-G solvation = -78.144409 kcal Electronic energy + Delta-G solvation = -28886.026896 eV Core-core repulsion = 24576.591781 eV Total energy + Delta-G solvation = -4309.435116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.118 amu Computer time = 6.91 seconds Orbital eigenvalues (eV) -40.29656 -39.24304 -37.55449 -37.44142 -36.86513 -36.46447 -34.28772 -33.23065 -32.34845 -30.50968 -30.30742 -28.32552 -27.39119 -25.93445 -25.47647 -23.57949 -22.29133 -21.56143 -20.25836 -19.34299 -18.91070 -18.23640 -17.79533 -17.36579 -17.10347 -16.75050 -16.19402 -15.84324 -15.48265 -14.99585 -14.96120 -14.82201 -14.51033 -14.33791 -14.04060 -13.89783 -13.60378 -13.35455 -13.17382 -13.09770 -12.89582 -12.80942 -12.62457 -12.57533 -12.51434 -12.39160 -11.95029 -11.84360 -11.71557 -11.56995 -11.29646 -11.19287 -11.14154 -10.93329 -10.72562 -10.57662 -9.91172 -9.69258 -9.56031 -9.07227 -8.91139 -8.45403 -7.19416 -6.71237 -4.25796 -0.49576 0.94093 1.96115 2.06932 2.42646 2.66985 2.99012 3.00979 3.06773 3.06951 3.39189 3.48056 3.77259 3.83533 3.98131 4.08751 4.23185 4.35623 4.43991 4.64905 4.74091 4.86004 4.93942 4.96025 4.97298 5.06516 5.11174 5.19492 5.28685 5.37136 5.42590 5.48290 5.53573 5.59682 5.93611 6.03905 6.04639 6.38118 6.39242 6.52622 6.71675 6.84538 7.05493 7.10802 7.17742 7.23418 7.56809 7.74147 8.07700 8.73568 9.39787 10.45240 Molecular weight = 365.12amu Principal moments of inertia in cm(-1) A = 0.035192 B = 0.001418 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.437297 B =19748.121970 C =20129.174105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.560 3.440 4 O -0.553 6.553 5 C -0.290 4.290 6 C 0.046 3.954 7 C -0.202 4.202 8 C -0.041 4.041 9 C -0.200 4.200 10 C 0.167 3.833 11 O -0.161 6.161 12 C -0.393 4.393 13 H 0.099 0.901 14 C 0.042 3.958 15 N -0.850 5.850 16 Si 0.945 3.055 17 H -0.264 1.264 18 H -0.273 1.273 19 H -0.273 1.273 20 C -0.242 4.242 21 C -0.033 4.033 22 C 0.145 3.855 23 H 0.125 0.875 24 C -0.129 4.129 25 C -0.589 4.589 26 S 2.393 3.607 27 O -0.936 6.936 28 O -0.931 6.931 29 C -0.606 4.606 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.274 0.726 38 H 0.132 0.868 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.226 -23.668 -2.444 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.340 5.340 3 C 0.355 3.645 4 O -0.433 6.433 5 C -0.311 4.311 6 C 0.026 3.974 7 C -0.204 4.204 8 C -0.060 4.060 9 C -0.219 4.219 10 C 0.111 3.889 11 O -0.061 6.061 12 C -0.468 4.468 13 H 0.116 0.884 14 C -0.165 4.165 15 N -0.483 5.483 16 Si 0.769 3.231 17 H -0.188 1.188 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.262 4.262 21 C -0.051 4.051 22 C 0.038 3.962 23 H 0.143 0.857 24 C -0.168 4.168 25 C -0.719 4.719 26 S 2.575 3.425 27 O -0.933 6.933 28 O -0.928 6.928 29 C -0.736 4.736 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.084 0.916 38 H 0.149 0.851 39 H 0.132 0.868 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.159 0.841 43 H 0.160 0.840 44 H 0.160 0.840 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.618 -24.184 -1.896 24.694 hybrid contribution 0.075 1.454 -0.381 1.505 sum 4.692 -22.731 -2.277 23.321 Atomic orbital electron populations 1.21919 0.79146 1.03733 1.02460 1.47482 1.06896 1.04429 1.75201 1.18522 0.87106 0.84057 0.74831 1.90782 1.13870 1.87452 1.51199 1.22451 1.00099 0.91020 1.17559 1.22334 0.99313 0.91025 0.84714 1.18438 0.93078 0.91931 1.16904 1.20855 0.92907 0.96562 0.95634 1.20153 0.99696 0.89954 1.12092 1.19620 0.90740 0.87301 0.91274 1.83901 1.35599 1.11288 1.75351 1.21544 0.91517 0.81848 1.51933 0.88414 1.25412 0.96226 0.98900 0.95935 1.70017 1.07771 1.26785 1.43677 0.85572 0.79263 0.79694 0.78529 1.18832 1.19877 1.19867 1.21108 0.94003 0.98689 1.12365 1.20996 0.98588 0.91385 0.94159 1.21568 1.00092 0.84371 0.90122 0.85722 1.22296 1.03593 0.90857 1.00037 1.30455 1.11519 1.04925 1.24970 1.08953 0.75768 0.78087 0.79710 1.93631 1.59593 1.57916 1.82147 1.93651 1.35463 1.84588 1.79136 1.31105 1.12982 1.21710 1.07800 0.92107 0.89720 0.90975 0.85453 0.85919 0.86502 0.86096 0.91570 0.85076 0.86780 0.88230 0.89124 0.84112 0.84001 0.83965 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 8.96 59.84 0.54 0.93 16 2 N -0.61 -5.30 2.82 -173.87 -0.49 -5.79 16 3 C 0.56 7.02 7.60 -13.04 -0.10 6.92 16 4 O -0.55 -8.74 15.58 5.16 0.08 -8.66 16 5 C -0.29 -3.58 8.61 -37.51 -0.32 -3.90 16 6 C 0.05 0.65 9.45 -37.20 -0.35 0.29 16 7 C -0.20 -3.24 5.87 -105.03 -0.62 -3.86 16 8 C -0.04 -0.66 9.40 -39.15 -0.37 -1.03 16 9 C -0.20 -3.81 9.97 -39.46 -0.39 -4.20 16 10 C 0.17 3.71 6.66 -38.88 -0.26 3.46 16 11 O -0.16 -4.25 9.74 0.74 0.01 -4.24 16 12 C -0.39 -10.20 9.48 30.91 0.29 -9.90 16 13 H 0.10 2.33 5.18 -52.49 -0.27 2.06 16 14 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 15 N -0.85 -23.30 13.67 55.48 0.76 -22.55 16 16 Si 0.95 19.10 29.55 -169.99 -5.02 14.08 16 17 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 C -0.24 -4.83 9.14 -39.47 -0.36 -5.20 16 21 C -0.03 -0.56 9.78 -39.14 -0.38 -0.94 16 22 C 0.14 1.03 2.97 -66.39 -0.20 0.83 16 23 H 0.12 1.07 6.94 -51.93 -0.36 0.71 16 24 C -0.13 -0.57 5.89 -25.66 -0.15 -0.73 16 25 C -0.59 -2.05 7.26 37.77 0.27 -1.78 16 26 S 2.39 14.86 6.11 -107.50 -0.66 14.21 16 27 O -0.94 -8.82 18.15 -57.71 -1.05 -9.86 16 28 O -0.93 -9.51 18.15 -57.71 -1.05 -10.56 16 29 C -0.61 -3.31 6.77 38.24 0.26 -3.05 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.47 6.09 -51.93 -0.32 0.16 16 32 H 0.07 0.23 6.30 -51.93 -0.33 -0.09 16 33 H 0.13 1.31 4.21 -52.49 -0.22 1.09 16 34 H 0.12 1.72 7.52 -52.48 -0.39 1.33 16 35 H 0.12 1.47 6.16 -52.49 -0.32 1.15 16 36 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.13 2.60 5.62 -52.48 -0.29 2.31 16 39 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.26 6.32 -51.93 -0.33 -0.07 16 42 H 0.14 0.37 8.14 -51.94 -0.42 -0.05 16 43 H 0.14 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.14 0.53 7.28 -51.93 -0.38 0.16 16 45 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -35.98 385.15 -9.16 -45.14 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.31 Total: 3.60 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -2.24 Total: -21.17 kcal Atomic # 7 Polarization: -28.60 SS G_CDS: 0.27 Total: -28.34 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -2.01 Total: -33.32 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 16 Polarization: 14.86 SS G_CDS: -0.66 Total: 14.21 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.98 -9.16 -45.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031611304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.008 kcal (2) G-P(sol) polarization free energy of solvation -35.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.92 seconds