Wall clock time and date at job start Tue Mar 31 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46511 * 1 3 3 C 1.34774 * 119.99384 * 2 1 4 4 O 1.21730 * 119.99790 * 179.97438 * 3 2 1 5 5 C 1.46255 * 120.00799 * 359.97438 * 3 2 1 6 6 C 1.35019 * 120.00095 * 180.02562 * 5 3 2 7 7 C 1.46965 * 119.99690 * 179.97438 * 6 5 3 8 8 C 1.40019 * 120.10162 * 359.72628 * 7 6 5 9 9 C 1.37605 * 119.89825 * 179.76052 * 8 7 6 10 10 C 1.39175 * 120.09697 * 0.49289 * 9 8 7 11 11 O 1.35573 * 119.89432 * 179.74176 * 10 9 8 12 12 C 1.34785 * 116.99674 * 174.46534 * 11 10 9 13 13 H 1.07992 * 120.00035 * 5.05514 * 12 11 10 14 14 C 1.38719 * 119.99382 * 185.05372 * 12 11 10 15 15 N 1.31515 * 119.99692 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00452 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.46764 * 90.00073 * 16 14 12 18 18 H 1.48498 * 109.47171 * 209.99963 * 16 14 12 19 19 H 1.48499 * 109.47086 * 329.99923 * 16 14 12 20 20 C 1.39176 * 120.20559 * 359.76154 * 10 9 8 21 21 C 1.37597 * 120.10220 * 359.97438 * 20 10 9 22 22 C 1.46492 * 119.99952 * 179.97438 * 2 1 3 23 23 H 1.09006 * 110.01268 * 178.62403 * 22 2 1 24 24 C 1.53878 * 110.02889 * 299.99765 * 22 2 1 25 25 C 1.54166 * 108.70313 * 166.47345 * 24 22 2 26 26 S 1.82918 * 105.08667 * 332.09363 * 25 24 22 27 27 O 1.42100 * 109.35006 * 115.52631 * 26 25 24 28 28 O 1.42102 * 109.35605 * 248.72587 * 26 25 24 29 29 C 1.55044 * 110.03010 * 57.19502 * 22 2 1 30 30 H 1.08992 * 109.46783 * 270.00533 * 1 2 3 31 31 H 1.08995 * 109.46466 * 150.00399 * 1 2 3 32 32 H 1.09002 * 109.46707 * 30.00186 * 1 2 3 33 33 H 1.08004 * 119.99588 * 0.02562 * 5 3 2 34 34 H 1.07996 * 120.00579 * 359.97438 * 6 5 3 35 35 H 1.08004 * 120.05391 * 359.97420 * 8 7 6 36 36 H 1.07992 * 119.94725 * 180.22782 * 9 8 7 37 37 H 0.96992 * 120.00007 * 180.02562 * 15 14 12 38 38 H 1.08002 * 119.95051 * 179.97438 * 20 10 9 39 39 H 1.07993 * 120.05473 * 179.97438 * 21 20 10 40 40 H 1.08995 * 109.65209 * 286.32774 * 24 22 2 41 41 H 1.08999 * 109.64495 * 46.75608 * 24 22 2 42 42 H 1.08995 * 110.31778 * 90.99737 * 25 24 22 43 43 H 1.09004 * 110.31651 * 213.09453 * 25 24 22 44 44 H 1.09005 * 110.78717 * 316.54223 * 29 22 2 45 45 H 1.09002 * 110.79252 * 80.00312 * 29 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3561 1.1673 0.0005 5 6 1.4076 2.4339 -0.0006 6 6 2.0827 3.6032 -0.0011 7 6 1.3479 4.8759 -0.0022 8 6 -0.0523 4.8783 -0.0086 9 6 -0.7362 6.0724 -0.0046 10 6 -0.0381 7.2765 -0.0047 11 8 -0.7161 8.4505 -0.0061 12 6 0.0131 9.5782 0.1097 13 1 1.0917 9.5255 0.1159 14 6 -0.6221 10.8064 0.2208 15 7 0.0892 11.9067 0.3344 16 14 -2.4879 10.8974 0.2107 17 1 -2.9963 10.7881 1.6017 18 1 -2.9171 12.1937 -0.3728 19 1 -3.0334 9.7827 -0.6048 20 6 1.3536 7.2790 -0.0038 21 6 2.0459 6.0898 -0.0022 22 6 2.1976 -1.2687 0.0006 23 1 3.2708 -1.0798 -0.0241 24 6 1.8351 -2.0859 1.2530 25 6 2.3399 -3.5303 1.0640 26 16 2.3348 -3.8036 -0.7446 27 8 3.6676 -4.0051 -1.1942 28 8 1.3238 -4.7458 -1.0757 29 6 1.7796 -2.1237 -1.2234 30 1 -0.3632 0.0001 1.0276 31 1 -0.3632 -0.8900 -0.5138 32 1 -0.3633 0.8900 -0.5139 33 1 0.3276 2.4338 -0.0006 34 1 3.1627 3.6033 -0.0007 35 1 -0.5948 3.9444 -0.0130 36 1 -1.8161 6.0752 -0.0058 37 1 -0.3549 12.7654 0.4124 38 1 1.8911 8.2157 -0.0043 39 1 3.1258 6.0926 -0.0019 40 1 2.3092 -1.6437 2.1291 41 1 0.7532 -2.0924 1.3859 42 1 3.3505 -3.6327 1.4594 43 1 1.6683 -4.2334 1.5565 44 1 0.6987 -2.0983 -1.3621 45 1 2.2943 -1.7881 -2.1237 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031611307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:52 Heat of formation + Delta-G solvation = -75.555906 kcal Electronic energy + Delta-G solvation = -28922.301223 eV Core-core repulsion = 24612.978353 eV Total energy + Delta-G solvation = -4309.322870 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.118 amu Computer time = 5.59 seconds Orbital eigenvalues (eV) -40.34632 -39.40618 -37.59793 -37.49265 -36.99777 -36.49014 -34.33794 -33.26961 -32.51755 -30.61114 -30.34055 -28.51892 -27.48343 -25.98171 -25.38854 -23.53828 -22.38673 -21.60663 -20.26277 -19.37322 -18.92219 -18.21331 -17.80063 -17.48425 -17.34099 -16.78985 -16.24037 -15.86034 -15.52398 -15.08954 -15.03861 -14.92533 -14.44665 -14.25989 -14.10020 -14.02553 -13.77969 -13.40793 -13.14402 -13.00207 -12.91779 -12.87002 -12.64010 -12.54331 -12.53040 -12.45604 -12.39269 -11.95967 -11.78037 -11.60186 -11.35868 -11.24822 -11.07218 -10.96255 -10.82486 -10.33094 -9.96569 -9.74801 -9.61168 -9.11562 -8.96993 -8.54142 -7.32346 -6.65840 -4.29561 -0.52128 0.85646 1.93486 1.96801 2.34117 2.62375 3.03406 3.07797 3.11652 3.24395 3.32865 3.45289 3.80482 3.95804 4.03881 4.06532 4.20380 4.32568 4.35792 4.55949 4.61635 4.67580 4.88181 4.89880 4.93604 4.98349 5.09222 5.11994 5.24917 5.34405 5.34485 5.40953 5.45582 5.52592 5.86794 5.94083 5.99265 6.22355 6.32540 6.44549 6.59854 6.84260 7.01525 7.03922 7.13413 7.35077 7.56794 7.78185 8.02381 8.67076 9.26698 10.40210 Molecular weight = 365.12amu Principal moments of inertia in cm(-1) A = 0.032409 B = 0.001457 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.744126 B =19215.169270 C =19699.317145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.560 3.440 4 O -0.551 6.551 5 C -0.285 4.285 6 C 0.043 3.957 7 C -0.193 4.193 8 C -0.044 4.044 9 C -0.200 4.200 10 C 0.174 3.826 11 O -0.200 6.200 12 C -0.392 4.392 13 H 0.111 0.889 14 C 0.066 3.934 15 N -0.865 5.865 16 Si 0.907 3.093 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.258 1.258 20 C -0.230 4.230 21 C -0.035 4.035 22 C 0.145 3.855 23 H 0.125 0.875 24 C -0.127 4.127 25 C -0.589 4.589 26 S 2.394 3.606 27 O -0.931 6.931 28 O -0.936 6.936 29 C -0.609 4.609 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.284 0.716 38 H 0.138 0.862 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 -27.100 1.373 27.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.340 5.340 3 C 0.354 3.646 4 O -0.431 6.431 5 C -0.306 4.306 6 C 0.023 3.977 7 C -0.194 4.194 8 C -0.062 4.062 9 C -0.219 4.219 10 C 0.119 3.881 11 O -0.103 6.103 12 C -0.467 4.467 13 H 0.129 0.871 14 C -0.139 4.139 15 N -0.500 5.500 16 Si 0.732 3.268 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.182 1.182 20 C -0.249 4.249 21 C -0.053 4.053 22 C 0.039 3.961 23 H 0.143 0.857 24 C -0.166 4.166 25 C -0.719 4.719 26 S 2.576 3.424 27 O -0.928 6.928 28 O -0.933 6.933 29 C -0.738 4.738 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.094 0.906 38 H 0.155 0.845 39 H 0.135 0.865 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.159 0.841 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.293 -27.538 0.826 27.552 hybrid contribution -0.998 0.966 0.502 1.477 sum -0.705 -26.572 1.328 26.615 Atomic orbital electron populations 1.21920 0.79155 1.03761 1.02395 1.47480 1.06904 1.04457 1.75145 1.18511 0.87125 0.84051 0.74900 1.90792 1.13838 1.87434 1.51024 1.22482 1.00114 0.91071 1.16955 1.22354 0.99464 0.90951 0.84893 1.18504 0.93082 0.92044 1.15791 1.20859 0.92932 0.96583 0.95813 1.20144 0.99624 0.89948 1.12183 1.19369 0.90733 0.86203 0.91769 1.83505 1.36841 1.12400 1.77551 1.20888 0.92884 0.81362 1.51567 0.87145 1.24552 1.00724 0.93562 0.95088 1.69614 1.36950 0.98311 1.45127 0.86151 0.82958 0.78273 0.79415 1.19609 1.20467 1.18194 1.21226 0.93914 0.99075 1.10698 1.21049 0.98865 0.91260 0.94143 1.21579 1.00103 0.84319 0.90147 0.85690 1.22276 1.03553 0.90820 0.99976 1.30464 1.11552 1.04973 1.24925 1.08930 0.75768 0.78032 0.79707 1.93652 1.35439 1.84548 1.79149 1.93632 1.59615 1.57847 1.82178 1.31135 1.13024 1.21844 1.07841 0.92035 0.91019 0.89773 0.85417 0.85739 0.86334 0.86086 0.90584 0.84463 0.86488 0.88255 0.89195 0.84109 0.83987 0.83898 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 9.06 59.85 0.54 0.91 16 2 N -0.61 -5.02 2.82 -173.87 -0.49 -5.52 16 3 C 0.56 6.74 7.60 -13.04 -0.10 6.64 16 4 O -0.55 -8.48 15.58 5.16 0.08 -8.40 16 5 C -0.29 -3.33 8.61 -37.51 -0.32 -3.65 16 6 C 0.04 0.58 9.45 -37.19 -0.35 0.23 16 7 C -0.19 -2.95 5.87 -105.02 -0.62 -3.57 16 8 C -0.04 -0.65 9.40 -39.15 -0.37 -1.02 16 9 C -0.20 -3.51 9.97 -39.46 -0.39 -3.90 16 10 C 0.17 3.66 6.66 -38.89 -0.26 3.40 16 11 O -0.20 -4.86 8.57 0.72 0.01 -4.86 16 12 C -0.39 -10.26 9.94 30.91 0.31 -9.95 16 13 H 0.11 2.94 5.41 -52.49 -0.28 2.66 16 14 C 0.07 1.74 5.49 -17.51 -0.10 1.64 16 15 N -0.86 -23.42 13.96 55.48 0.77 -22.64 16 16 Si 0.91 20.13 28.62 -169.99 -4.86 15.26 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 20 C -0.23 -4.52 9.14 -39.47 -0.36 -4.88 16 21 C -0.03 -0.58 9.78 -39.15 -0.38 -0.96 16 22 C 0.14 0.98 2.97 -66.40 -0.20 0.78 16 23 H 0.13 1.03 6.94 -51.93 -0.36 0.67 16 24 C -0.13 -0.54 5.89 -25.66 -0.15 -0.69 16 25 C -0.59 -1.93 7.26 37.77 0.27 -1.65 16 26 S 2.39 14.21 6.11 -107.50 -0.66 13.55 16 27 O -0.93 -9.28 18.15 -57.71 -1.05 -10.33 16 28 O -0.94 -8.55 18.15 -57.71 -1.05 -9.60 16 29 C -0.61 -3.08 6.76 38.24 0.26 -2.82 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.22 6.16 -51.93 -0.32 -0.10 16 32 H 0.08 0.43 6.09 -51.93 -0.32 0.11 16 33 H 0.13 1.21 4.21 -52.48 -0.22 0.99 16 34 H 0.12 1.69 7.52 -52.49 -0.39 1.29 16 35 H 0.12 1.36 6.16 -52.48 -0.32 1.03 16 36 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 37 H 0.28 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.14 2.83 5.62 -52.49 -0.29 2.54 16 39 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.24 7.35 -51.93 -0.38 -0.14 16 42 H 0.14 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.14 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.14 0.46 6.23 -51.93 -0.32 0.14 16 45 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 383.96 15.07 5.79 5.79 Total: -1.00 -35.10 383.96 -8.99 -44.09 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -5.31 Total: 2.16 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -2.22 Total: -19.51 kcal Atomic # 7 Polarization: -28.44 SS G_CDS: 0.28 Total: -28.16 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -2.01 Total: -33.18 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.86 Total: 15.26 kcal Atomic # 16 Polarization: 14.21 SS G_CDS: -0.66 Total: 13.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.10 -8.99 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031611307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.464 kcal (2) G-P(sol) polarization free energy of solvation -35.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.59 seconds