Wall clock time and date at job start Tue Mar 31 2020 06:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99723 * 2 1 4 4 H 1.48500 * 109.47324 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47044 * 299.99889 * 3 2 1 6 6 H 1.48505 * 109.47476 * 59.99897 * 3 2 1 7 7 C 1.37875 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99902 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00018 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47137 * 179.97438 * 9 7 2 11 11 C 1.34778 * 119.99935 * 89.99483 * 10 9 7 12 12 O 1.21289 * 119.99902 * 175.26762 * 11 10 9 13 13 C 1.50699 * 120.00079 * 355.26954 * 11 10 9 14 14 O 1.42898 * 109.46842 * 179.97438 * 13 11 10 15 15 C 1.36002 * 117.00017 * 179.97438 * 14 13 11 16 16 C 1.38638 * 120.03368 * 359.72742 * 15 14 13 17 17 C 1.38198 * 119.98884 * 179.71850 * 16 15 14 18 18 C 1.38452 * 120.07107 * 0.55954 * 17 16 15 19 19 F 1.35097 * 119.96141 * 179.74704 * 18 17 16 20 20 C 1.38439 * 120.07314 * 359.71118 * 18 17 16 21 21 C 1.38336 * 120.00793 * 0.02562 * 20 18 17 22 22 F 1.35103 * 120.03314 * 179.97438 * 21 20 18 23 23 C 1.40027 * 119.99877 * 270.00168 * 10 9 7 24 24 C 1.38846 * 120.04927 * 111.84831 * 23 10 9 25 25 C 1.38118 * 119.95504 * 179.76454 * 24 23 10 26 26 C 1.38473 * 120.04623 * 0.51039 * 25 24 23 27 27 F 1.35096 * 119.95678 * 179.71624 * 26 25 24 28 28 C 1.38481 * 120.08872 * 359.74514 * 26 25 24 29 29 C 1.38121 * 120.04281 * 359.97438 * 28 26 25 30 30 H 0.96998 * 120.00431 * 0.02562 * 1 2 3 31 31 H 1.08991 * 109.47226 * 59.99674 * 9 7 2 32 32 H 1.08998 * 109.46531 * 299.99394 * 9 7 2 33 33 H 1.08995 * 109.46877 * 60.00223 * 13 11 10 34 34 H 1.08992 * 109.47286 * 299.99584 * 13 11 10 35 35 H 1.07993 * 120.00643 * 359.97438 * 16 15 14 36 36 H 1.08003 * 119.96001 * 180.25436 * 17 16 15 37 37 H 1.08004 * 119.99390 * 180.02562 * 20 18 17 38 38 H 1.07999 * 120.02479 * 0.02562 * 24 23 10 39 39 H 1.08003 * 119.97761 * 180.23141 * 25 24 23 40 40 H 1.07992 * 119.97692 * 179.97438 * 28 26 25 41 41 H 1.07995 * 120.01640 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8902 2.3964 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6412 -4.1247 1.1678 12 8 3.3615 -5.1005 1.1695 13 6 2.2359 -3.4849 2.4706 14 8 2.8221 -4.2045 3.5572 15 6 2.5545 -3.7537 4.8121 16 6 1.7496 -2.6394 4.9922 17 6 1.4735 -2.1856 6.2680 18 6 2.0093 -2.8357 7.3667 19 9 1.7421 -2.3872 8.6127 20 6 2.8180 -3.9454 7.1899 21 6 3.0920 -4.4056 5.9144 22 9 3.8815 -5.4881 5.7412 23 6 2.6582 -4.1447 -1.2122 24 6 3.9837 -3.9784 -1.5906 25 6 4.4316 -4.5082 -2.7849 26 6 3.5572 -5.1958 -3.6096 27 9 3.9959 -5.7084 -4.7800 28 6 2.2335 -5.3583 -3.2365 29 6 1.7831 -4.8349 -2.0403 30 1 -0.4851 0.8400 -0.0004 31 1 0.6248 -2.5571 -0.8896 32 1 0.6242 -2.5566 0.8904 33 1 1.1502 -3.5074 2.5641 34 1 2.5811 -2.4513 2.4907 35 1 1.3350 -2.1285 4.1358 36 1 0.8430 -1.3199 6.4079 37 1 3.2349 -4.4518 8.0478 38 1 4.6650 -3.4387 -0.9496 39 1 5.4634 -4.3823 -3.0779 40 1 1.5531 -5.8945 -3.8812 41 1 0.7506 -4.9615 -1.7499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031712744.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:40 Heat of formation + Delta-G solvation = -144.623119 kcal Electronic energy + Delta-G solvation = -31761.585217 eV Core-core repulsion = 26771.966677 eV Total energy + Delta-G solvation = -4989.618540 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.103 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.04783 -48.88950 -48.70378 -40.45356 -39.69823 -38.08296 -37.03225 -35.22303 -32.84531 -31.10041 -30.95710 -30.43573 -29.43807 -27.79479 -27.04308 -23.64605 -23.40967 -22.78739 -22.61541 -22.04015 -19.39429 -18.71560 -17.84590 -17.50797 -17.39523 -17.07263 -16.60537 -16.43036 -16.15402 -15.99234 -15.73183 -15.62645 -15.36900 -15.20919 -14.95642 -14.62190 -14.48314 -14.33411 -13.96118 -13.92949 -13.36351 -13.19437 -12.99604 -12.64749 -12.56333 -12.36926 -12.32657 -12.04435 -12.02119 -11.72356 -11.40737 -11.22168 -11.03895 -10.93131 -10.86960 -10.41386 -10.04449 -9.48185 -9.26621 -8.89849 -8.79697 -8.72823 -8.22611 -7.88666 -6.41615 -4.50960 0.78945 0.89840 1.32094 1.46237 2.61799 2.91113 3.07993 3.18599 3.21311 3.21920 3.66272 3.80651 3.85541 4.15225 4.22082 4.44765 4.45986 4.64930 4.84207 4.91668 4.94635 4.97413 5.03961 5.19746 5.27600 5.45689 5.46061 5.59786 5.62674 5.74887 5.76389 5.85640 5.90161 6.08018 6.29792 6.36415 6.40641 6.47829 6.63361 6.83082 6.96473 7.10941 7.36001 7.52434 7.74373 7.83342 8.48162 8.62723 9.18696 10.65012 Molecular weight = 365.10amu Principal moments of inertia in cm(-1) A = 0.008475 B = 0.003064 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3303.084401 B = 9136.259417 C =11713.206648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.234 3.766 10 N -0.557 5.557 11 C 0.526 3.474 12 O -0.531 6.531 13 C 0.044 3.956 14 O -0.283 6.283 15 C 0.099 3.901 16 C -0.153 4.153 17 C -0.117 4.117 18 C 0.083 3.917 19 F -0.136 7.136 20 C -0.155 4.155 21 C 0.098 3.902 22 F -0.123 7.123 23 C 0.166 3.834 24 C -0.077 4.077 25 C -0.144 4.144 26 C 0.083 3.917 27 F -0.146 7.146 28 C -0.144 4.144 29 C -0.093 4.093 30 H 0.268 0.732 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.158 0.842 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 -5.048 6.253 8.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.586 4.586 8 H 0.083 0.917 9 C 0.116 3.884 10 N -0.286 5.286 11 C 0.314 3.686 12 O -0.408 6.408 13 C -0.033 4.033 14 O -0.195 6.195 15 C 0.051 3.949 16 C -0.172 4.172 17 C -0.136 4.136 18 C 0.064 3.936 19 F -0.114 7.114 20 C -0.175 4.175 21 C 0.078 3.922 22 F -0.101 7.101 23 C 0.075 3.925 24 C -0.097 4.097 25 C -0.163 4.163 26 C 0.063 3.937 27 F -0.124 7.124 28 C -0.164 4.164 29 C -0.113 4.113 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.116 0.884 34 H 0.132 0.868 35 H 0.175 0.825 36 H 0.164 0.836 37 H 0.170 0.830 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.692 -5.635 6.215 8.558 hybrid contribution 0.309 1.215 -0.140 1.262 sum 2.001 -4.420 6.075 7.775 Atomic orbital electron populations 1.69906 1.06015 1.27663 1.48816 1.24912 0.94859 0.99358 0.94280 0.86462 0.80222 0.83001 0.78035 1.19506 1.20624 1.20611 1.21460 0.93795 0.90060 1.53247 0.91685 1.19701 0.87143 0.82110 0.99452 1.45795 1.45858 1.35070 1.01911 1.19820 0.80589 0.83573 0.84651 1.90719 1.36971 1.25822 1.87280 1.22688 0.99545 0.97271 0.83815 1.86183 1.69098 1.53336 1.10930 1.19078 0.96637 0.94267 0.84912 1.21248 1.00407 0.96572 0.98926 1.21045 1.00830 1.01043 0.90704 1.17139 1.00718 0.95839 0.79916 1.91509 1.92560 1.88534 1.38830 1.20824 1.01898 0.98241 0.96496 1.16516 0.96787 0.87957 0.90977 1.91550 1.71258 1.51285 1.96004 1.17516 0.92527 0.95182 0.87287 1.21118 0.95567 0.97702 0.95303 1.20940 1.00021 1.00353 0.94992 1.17643 0.93327 0.99477 0.83207 1.91460 1.90117 1.85286 1.45579 1.20898 0.94219 1.03202 0.98037 1.21068 1.00375 0.96098 0.93763 0.92234 0.93644 0.93973 0.88400 0.86820 0.82461 0.83552 0.82951 0.85044 0.84788 0.84719 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.99 13.29 55.43 0.74 -21.25 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 18.83 29.54 -169.99 -5.02 13.81 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.55 -12.57 9.16 -34.44 -0.32 -12.89 16 8 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 9 C 0.23 4.84 4.88 -5.19 -0.03 4.81 16 10 N -0.56 -10.63 2.51 -114.72 -0.29 -10.91 16 11 C 0.53 10.12 7.61 -10.99 -0.08 10.03 16 12 O -0.53 -11.65 16.27 -14.36 -0.23 -11.89 16 13 C 0.04 0.72 3.88 36.01 0.14 0.86 16 14 O -0.28 -4.82 9.53 -39.66 -0.38 -5.20 16 15 C 0.10 1.41 6.69 -39.19 -0.26 1.15 16 16 C -0.15 -1.86 9.04 -39.45 -0.36 -2.22 16 17 C -0.12 -1.27 10.02 -39.52 -0.40 -1.66 16 18 C 0.08 0.93 7.30 -39.43 -0.29 0.64 16 19 F -0.14 -1.53 17.26 2.25 0.04 -1.49 16 20 C -0.15 -1.74 10.00 -39.47 -0.39 -2.13 16 21 C 0.10 1.33 7.31 -39.31 -0.29 1.05 16 22 F -0.12 -1.85 17.11 2.25 0.04 -1.82 16 23 C 0.17 3.03 4.75 -83.66 -0.40 2.63 16 24 C -0.08 -1.33 9.56 -39.40 -0.38 -1.71 16 25 C -0.14 -2.17 10.02 -39.54 -0.40 -2.57 16 26 C 0.08 1.24 7.30 -39.40 -0.29 0.96 16 27 F -0.15 -2.13 17.26 2.25 0.04 -2.09 16 28 C -0.14 -2.08 10.02 -39.53 -0.40 -2.47 16 29 C -0.09 -1.49 9.69 -39.40 -0.38 -1.88 16 30 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 31 H 0.05 1.00 7.86 -51.93 -0.41 0.60 16 32 H 0.04 0.85 6.48 -51.93 -0.34 0.52 16 33 H 0.10 1.40 6.79 -51.93 -0.35 1.05 16 34 H 0.11 1.81 7.42 -51.93 -0.39 1.42 16 35 H 0.16 1.81 6.30 -52.49 -0.33 1.48 16 36 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 38 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 39 H 0.13 1.70 8.06 -52.48 -0.42 1.27 16 40 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -27.66 376.07 -7.90 -35.55 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -3.89 Total: 3.44 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -4.60 Total: -3.82 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.45 Total: -32.17 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.61 Total: -17.09 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.12 Total: -5.40 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.66 -7.90 -35.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031712744.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.069 kcal (2) G-P(sol) polarization free energy of solvation -27.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds